Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARPUF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARPUF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARPUF-01A-01D_TARGET-30-PARPUF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARPUF-01A-01D_TARGET-30-PARPUF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARPUF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARPUF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-01A-01D	DNA	EFO	SRS641467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-01A-01D A43704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43704	SRX610459	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARPUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-01A-01D A43704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43704_1_lane_dupsFlagged.bam	SRR1424878	@dbgap@:reads/SRP012002/SRS641467/SRX610459/SRR1424878/SRR1424878.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARPUF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARPUF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARPUF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARPUF-01A-01D_TARGET-30-PARPUF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARPUF-01A-01D_TARGET-30-PARPUF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARPUF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARPUF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARPUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARPUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARPUF-10A-01D	DNA	EFO	SRS641520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARPUF-10A-01D A43696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43696	SRX610512	"Specific Capture analysis of normal sample TARGET-30-PARPUF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARPUF-10A-01D A43696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43696_1_lane_dupsFlagged.bam	SRR1424924	@dbgap@:reads/SRP012002/SRS641520/SRX610512/SRR1424924/SRR1424924.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARPUF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSVF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSVF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSVF-01A-01D_TARGET-30-PARSVF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSVF-01A-01D_TARGET-30-PARSVF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSVF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSVF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-01A-01D	DNA	EFO	SRS641489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-01A-01D A43683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43683	SRX610481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-01A-01D A43683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43683_1_lane_dupsFlagged.bam	SRR1424881	@dbgap@:reads/SRP012002/SRS641489/SRX610481/SRR1424881/SRR1424881.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSVF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSVF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSVF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSVF-01A-01D_TARGET-30-PARSVF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSVF-01A-01D_TARGET-30-PARSVF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSVF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSVF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSVF-10A-01D	DNA	EFO	SRS641474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSVF-10A-01D A43675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43675	SRX610467	"Specific Capture analysis of normal sample TARGET-30-PARSVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSVF-10A-01D A43675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43675_1_lane_dupsFlagged.bam	SRR1424899	@dbgap@:reads/SRP012002/SRS641474/SRX610467/SRR1424899/SRR1424899.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSVF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSXI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSXI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSXI-01A-01D_TARGET-30-PARSXI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSXI-01A-01D_TARGET-30-PARSXI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSXI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSXI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-01A-01D	DNA	EFO	SRS640891	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-01A-01D A44471 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44471	SRX609584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-01A-01D A44471 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44471_1_lane_dupsFlagged.bam	SRR1423555	@dbgap@:reads/SRP012002/SRS640891/SRX609584/SRR1423555/SRR1423555.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSXI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSXI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSXI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSXI-01A-01D_TARGET-30-PARSXI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSXI-01A-01D_TARGET-30-PARSXI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSXI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSXI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSXI-10A-01D	DNA	EFO	SRS640880	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSXI-10A-01D A44463 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44463	SRX609573	"Specific Capture analysis of normal sample TARGET-30-PARSXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARSXI-10A-01D A44463 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44463_1_lane_dupsFlagged.bam	SRR1423513	@dbgap@:reads/SRP012002/SRS640880/SRX609573/SRR1423513/SRR1423513.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSXI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSZV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSZV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSZV-01A-01D_TARGET-30-PARSZV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSZV-01A-01D_TARGET-30-PARSZV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSZV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSZV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-01A-01D	DNA	EFO	SRS641527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-01A-01D A43684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43684	SRX610518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARSZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-01A-01D A43684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43684_1_lane_dupsFlagged.bam	SRR1424900	@dbgap@:reads/SRP012002/SRS641527/SRX610518/SRR1424900/SRR1424900.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSZV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARSZV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARSZV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSZV-01A-01D_TARGET-30-PARSZV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARSZV-01A-01D_TARGET-30-PARSZV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARSZV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSZV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARSZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARSZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARSZV-10A-01D	DNA	EFO	SRS641526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARSZV-10A-01D A43676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43676	SRX610517	"Specific Capture analysis of normal sample TARGET-30-PARSZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARSZV-10A-01D A43676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43676_1_lane_dupsFlagged.bam	SRR1424848	@dbgap@:reads/SRP012002/SRS641526/SRX610517/SRR1424848/SRR1424848.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARSZV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTCE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTCE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTCE-01A-01D_TARGET-30-PARTCE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTCE-01A-01D_TARGET-30-PARTCE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTCE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTCE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-01A-01D	DNA	EFO	SRS641513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-01A-01D A43685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43685	SRX610505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTCE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-01A-01D A43685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43685_1_lane_dupsFlagged.bam	SRR1424890	@dbgap@:reads/SRP012002/SRS641513/SRX610505/SRR1424890/SRR1424890.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTCE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTCE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTCE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTCE-01A-01D_TARGET-30-PARTCE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTCE-01A-01D_TARGET-30-PARTCE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTCE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTCE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTCE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTCE-10A-01D	DNA	EFO	SRS641484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTCE-10A-01D A43677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43677	SRX610476	"Specific Capture analysis of normal sample TARGET-30-PARTCE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTCE-10A-01D A43677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43677_1_lane_dupsFlagged.bam	SRR1424891	@dbgap@:reads/SRP012002/SRS641484/SRX610476/SRR1424891/SRR1424891.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTCE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTPF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTPF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTPF-01A-01D_TARGET-30-PARTPF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTPF-01A-01D_TARGET-30-PARTPF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTPF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTPF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-01A-01D	DNA	EFO	SRS640955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-01A-01D A44472 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44472	SRX609647	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTPF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-01A-01D A44472 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44472_1_lane_dupsFlagged.bam	SRR1423482	@dbgap@:reads/SRP012002/SRS640955/SRX609647/SRR1423482/SRR1423482.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTPF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTPF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTPF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTPF-01A-01D_TARGET-30-PARTPF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTPF-01A-01D_TARGET-30-PARTPF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTPF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTPF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTPF-10A-01D	DNA	EFO	SRS640949	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTPF-10A-01D A44464 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44464	SRX609643	"Specific Capture analysis of normal sample TARGET-30-PARTPF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PARTPF-10A-01D A44464 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44464_1_lane_dupsFlagged.bam	SRR1423487	@dbgap@:reads/SRP012002/SRS640949/SRX609643/SRR1423487/SRR1423487.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTPF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTRP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTRP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTRP-01A-01D_TARGET-30-PARTRP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTRP-01A-01D_TARGET-30-PARTRP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTRP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTRP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-01A-01D	DNA	EFO	SRS641522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-01A-01D A43686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43686	SRX610513	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-01A-01D A43686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43686_1_lane_dupsFlagged.bam	SRR1424868	@dbgap@:reads/SRP012002/SRS641522/SRX610513/SRR1424868/SRR1424868.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTRP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTRP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTRP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTRP-01A-01D_TARGET-30-PARTRP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTRP-01A-01D_TARGET-30-PARTRP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTRP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTRP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTRP-10A-01D	DNA	EFO	SRS641497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTRP-10A-01D A43678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43678	SRX610489	"Specific Capture analysis of normal sample TARGET-30-PARTRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTRP-10A-01D A43678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43678_1_lane_dupsFlagged.bam	SRR1424879	@dbgap@:reads/SRP012002/SRS641497/SRX610489/SRR1424879/SRR1424879.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTRP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTYI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTYI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTYI-01A-01D_TARGET-30-PARTYI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTYI-01A-01D_TARGET-30-PARTYI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTYI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTYI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-01A-01D	DNA	EFO	SRS641500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-01A-01D A43687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43687	SRX610492	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-01A-01D A43687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43687_1_lane_dupsFlagged.bam	SRR1424867	@dbgap@:reads/SRP012002/SRS641500/SRX610492/SRR1424867/SRR1424867.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTYI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTYI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTYI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTYI-01A-01D_TARGET-30-PARTYI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTYI-01A-01D_TARGET-30-PARTYI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTYI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTYI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTYI-10A-01D	DNA	EFO	SRS641485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTYI-10A-01D A43679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43679	SRX610477	"Specific Capture analysis of normal sample TARGET-30-PARTYI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTYI-10A-01D A43679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43679_1_lane_dupsFlagged.bam	SRR1424860	@dbgap@:reads/SRP012002/SRS641485/SRX610477/SRR1424860/SRR1424860.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTYI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTZW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTZW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTZW-01A-01D_TARGET-30-PARTZW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTZW-01A-01D_TARGET-30-PARTZW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTZW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTZW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-01A-01D	DNA	EFO	SRS641529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-01A-01D A43688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43688	SRX610522	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARTZW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-01A-01D A43688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43688_1_lane_dupsFlagged.bam	SRR1424926	@dbgap@:reads/SRP012002/SRS641529/SRX610522/SRR1424926/SRR1424926.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTZW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARTZW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARTZW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTZW-01A-01D_TARGET-30-PARTZW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARTZW-01A-01D_TARGET-30-PARTZW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARTZW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTZW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARTZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARTZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARTZW-10A-01D	DNA	EFO	SRS641496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARTZW-10A-01D A43680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43680	SRX610488	"Specific Capture analysis of normal sample TARGET-30-PARTZW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARTZW-10A-01D A43680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43680_1_lane_dupsFlagged.bam	SRR1424896	@dbgap@:reads/SRP012002/SRS641496/SRX610488/SRR1424896/SRR1424896.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARTZW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUCL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUCL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCL-01A-01D_TARGET-30-PARUCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCL-01A-01D_TARGET-30-PARUCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUCL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-01A-01D	DNA	EFO	SRS641486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-01A-01D A43689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43689	SRX610479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-01A-01D A43689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43689_1_lane_dupsFlagged.bam	SRR1424894	@dbgap@:reads/SRP012002/SRS641486/SRX610479/SRR1424894/SRR1424894.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUCL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUCL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCL-01A-01D_TARGET-30-PARUCL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCL-01A-01D_TARGET-30-PARUCL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUCL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCL-10A-01D	DNA	EFO	SRS641519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCL-10A-01D A43681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43681	SRX610511	"Specific Capture analysis of normal sample TARGET-30-PARUCL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCL-10A-01D A43681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43681_1_lane_dupsFlagged.bam	SRR1424883	@dbgap@:reads/SRP012002/SRS641519/SRX610511/SRR1424883/SRR1424883.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUCM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUCM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCM-01A-01D_TARGET-30-PARUCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCM-01A-01D_TARGET-30-PARUCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUCM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-01A-01D	DNA	EFO	SRS641514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-01A-01D A43690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43690	SRX610506	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-01A-01D A43690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43690_1_lane_dupsFlagged.bam	SRR1424933	@dbgap@:reads/SRP012002/SRS641514/SRX610506/SRR1424933/SRR1424933.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUCM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUCM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCM-01A-01D_TARGET-30-PARUCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUCM-01A-01D_TARGET-30-PARUCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUCM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUCM-10A-01D	DNA	EFO	SRS641475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUCM-10A-01D A43682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43682	SRX610468	"Specific Capture analysis of normal sample TARGET-30-PARUCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUCM-10A-01D A43682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43682_1_lane_dupsFlagged.bam	SRR1424948	@dbgap@:reads/SRP012002/SRS641475/SRX610468/SRR1424948/SRR1424948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUCM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUGX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUGX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUGX-01A-01D_TARGET-30-PARUGX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUGX-01A-01D_TARGET-30-PARUGX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUGX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUGX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-01A-01D	DNA	EFO	SRS641525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-01A-01D A43699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43699	SRX610519	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUGX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-01A-01D A43699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43699_1_lane_dupsFlagged.bam	SRR1424914	@dbgap@:reads/SRP012002/SRS641525/SRX610519/SRR1424914/SRR1424914.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUGX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUGX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUGX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUGX-01A-01D_TARGET-30-PARUGX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUGX-01A-01D_TARGET-30-PARUGX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUGX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUGX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUGX-10A-01D	DNA	EFO	SRS641553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUGX-10A-01D A43691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43691	SRX610545	"Specific Capture analysis of normal sample TARGET-30-PARUGX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUGX-10A-01D A43691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43691_1_lane_dupsFlagged.bam	SRR1424925	@dbgap@:reads/SRP012002/SRS641553/SRX610545/SRR1424925/SRR1424925.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUGX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUPT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUPT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUPT-01A-01D_TARGET-30-PARUPT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUPT-01A-01D_TARGET-30-PARUPT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUPT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUPT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-01A-01D	DNA	EFO	SRS640915	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-01A-01D A44817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44817	SRX609608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-01A-01D A44817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44817_1_lane_dupsFlagged.bam	SRR1423545	@dbgap@:reads/SRP012002/SRS640915/SRX609608/SRR1423545/SRR1423545.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUPT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUPT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUPT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUPT-01A-01D_TARGET-30-PARUPT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUPT-01A-01D_TARGET-30-PARUPT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUPT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUPT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUPT-10A-01D	DNA	EFO	SRS640914	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUPT-10A-01D A44809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44809	SRX609607	"Specific Capture analysis of normal sample TARGET-30-PARUPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PARUPT-10A-01D A44809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44809_1_lane_dupsFlagged.bam	SRR1423467	@dbgap@:reads/SRP012002/SRS640914/SRX609607/SRR1423467/SRR1423467.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUPT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUTJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUTJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTJ-01A-01D_TARGET-30-PARUTJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTJ-01A-01D_TARGET-30-PARUTJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUTJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-01A-01D	DNA	EFO	SRS641481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-01A-01D A43700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43700	SRX610473	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-01A-01D A43700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43700_1_lane_dupsFlagged.bam	SRR1424885	@dbgap@:reads/SRP012002/SRS641481/SRX610473/SRR1424885/SRR1424885.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUTJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUTJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTJ-01A-01D_TARGET-30-PARUTJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTJ-01A-01D_TARGET-30-PARUTJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUTJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTJ-10A-01D	DNA	EFO	SRS641491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTJ-10A-01D A43692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43692	SRX610483	"Specific Capture analysis of normal sample TARGET-30-PARUTJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTJ-10A-01D A43692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43692_1_lane_dupsFlagged.bam	SRR1424880	@dbgap@:reads/SRP012002/SRS641491/SRX610483/SRR1424880/SRR1424880.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUTX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUTX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTX-01A-01D_TARGET-30-PARUTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTX-01A-01D_TARGET-30-PARUTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUTX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-01A-01D	DNA	EFO	SRS641511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-01A-01D A43701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43701	SRX610504	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARUTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-01A-01D A43701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43701_1_lane_dupsFlagged.bam	SRR1424945	@dbgap@:reads/SRP012002/SRS641511/SRX610504/SRR1424945/SRR1424945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARUTX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARUTX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTX-01A-01D_TARGET-30-PARUTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARUTX-01A-01D_TARGET-30-PARUTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARUTX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARUTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARUTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARUTX-10A-01D	DNA	EFO	SRS641461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARUTX-10A-01D A43693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43693	SRX610453	"Specific Capture analysis of normal sample TARGET-30-PARUTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARUTX-10A-01D A43693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43693_1_lane_dupsFlagged.bam	SRR1424861	@dbgap@:reads/SRP012002/SRS641461/SRX610453/SRR1424861/SRR1424861.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARUTX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVHG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVHG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVHG-01A-01D_TARGET-30-PARVHG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVHG-01A-01D_TARGET-30-PARVHG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVHG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVHG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-01A-01D	DNA	EFO	SRS641477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-01A-01D A43703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43703	SRX610470	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-01A-01D A43703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43703_1_lane_dupsFlagged.bam	SRR1424909	@dbgap@:reads/SRP012002/SRS641477/SRX610470/SRR1424909/SRR1424909.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVHG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVHG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVHG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVHG-01A-01D_TARGET-30-PARVHG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVHG-01A-01D_TARGET-30-PARVHG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVHG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVHG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVHG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVHG-10A-01D	DNA	EFO	SRS641524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVHG-10A-01D A43695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43695	SRX610516	"Specific Capture analysis of normal sample TARGET-30-PARVHG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVHG-10A-01D A43695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43695_1_lane_dupsFlagged.bam	SRR1424874	@dbgap@:reads/SRP012002/SRS641524/SRX610516/SRR1424874/SRR1424874.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVHG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVIH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVIH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVIH-01A-01D_TARGET-30-PARVIH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVIH-01A-01D_TARGET-30-PARVIH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVIH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVIH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-01A-01D	DNA	EFO	SRS641458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-01A-01D A43702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43702	SRX610449	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-01A-01D A43702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43702_1_lane_dupsFlagged.bam	SRR1424934	@dbgap@:reads/SRP012002/SRS641458/SRX610449/SRR1424934/SRR1424934.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVIH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVIH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVIH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVIH-01A-01D_TARGET-30-PARVIH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVIH-01A-01D_TARGET-30-PARVIH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVIH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVIH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVIH-10A-01D	DNA	EFO	SRS641542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVIH-10A-01D A43694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43694	SRX610534	"Specific Capture analysis of normal sample TARGET-30-PARVIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVIH-10A-01D A43694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43694_1_lane_dupsFlagged.bam	SRR1424907	@dbgap@:reads/SRP012002/SRS641542/SRX610534/SRR1424907/SRR1424907.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVIH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVMU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVMU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVMU-01A-01D_TARGET-30-PARVMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVMU-01A-01D_TARGET-30-PARVMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVMU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVMU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-01A-01D	DNA	EFO	SRS641462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-01A-01D A43705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43705	SRX610454	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-01A-01D A43705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43705_1_lane_dupsFlagged.bam	SRR1424936	@dbgap@:reads/SRP012002/SRS641462/SRX610454/SRR1424936/SRR1424936.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVMU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVMU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVMU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVMU-01A-01D_TARGET-30-PARVMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVMU-01A-01D_TARGET-30-PARVMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVMU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVMU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVMU-10A-01D	DNA	EFO	SRS641534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVMU-10A-01D A43697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43697	SRX610526	"Specific Capture analysis of normal sample TARGET-30-PARVMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVMU-10A-01D A43697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43697_1_lane_dupsFlagged.bam	SRR1424941	@dbgap@:reads/SRP012002/SRS641534/SRX610526/SRR1424941/SRR1424941.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVMU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVVM-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVVM-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVVM-09A-01D_TARGET-30-PARVVM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVVM-09A-01D_TARGET-30-PARVVM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVVM-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVVM-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-09A-01D	DNA	EFO	SRS641547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-09A-01D A43736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43736	SRX610539	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARVVM-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-09A-01D A43736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43736_1_lane_dupsFlagged.bam	SRR1424872	@dbgap@:reads/SRP012002/SRS641547/SRX610539/SRR1424872/SRR1424872.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVVM-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVVM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVVM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVVM-09A-01D_TARGET-30-PARVVM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVVM-09A-01D_TARGET-30-PARVVM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVVM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVVM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVVM-10A-01D	DNA	EFO	SRS641539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVVM-10A-01D A43728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43728	SRX610531	"Specific Capture analysis of normal sample TARGET-30-PARVVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVVM-10A-01D A43728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43728_1_lane_dupsFlagged.bam	SRR1424904	@dbgap@:reads/SRP012002/SRS641539/SRX610531/SRR1424904/SRR1424904.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVVM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVWL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVWL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVWL-01A-01D_TARGET-30-PARVWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVWL-01A-01D_TARGET-30-PARVWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVWL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVWL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-01A-01D	DNA	EFO	SRS641531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-01A-01D A43706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43706	SRX610521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-01A-01D A43706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43706_1_lane_dupsFlagged.bam	SRR1424866	@dbgap@:reads/SRP012002/SRS641531/SRX610521/SRR1424866/SRR1424866.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVWL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVWL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVWL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVWL-01A-01D_TARGET-30-PARVWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVWL-01A-01D_TARGET-30-PARVWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVWL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVWL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVWL-10A-01D	DNA	EFO	SRS641532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVWL-10A-01D A43698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43698	SRX610524	"Specific Capture analysis of normal sample TARGET-30-PARVWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVWL-10A-01D A43698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43698_1_lane_dupsFlagged.bam	SRR1424905	@dbgap@:reads/SRP012002/SRS641532/SRX610524/SRR1424905/SRR1424905.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVWL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVZT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVZT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVZT-01A-01D_TARGET-30-PARVZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVZT-01A-01D_TARGET-30-PARVZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVZT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVZT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-01A-01D	DNA	EFO	SRS641471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-01A-01D A43715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43715	SRX610463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARVZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-01A-01D A43715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43715_1_lane_dupsFlagged.bam	SRR1424913	@dbgap@:reads/SRP012002/SRS641471/SRX610463/SRR1424913/SRR1424913.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVZT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARVZT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARVZT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVZT-01A-01D_TARGET-30-PARVZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARVZT-01A-01D_TARGET-30-PARVZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARVZT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVZT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARVZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARVZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARVZT-10A-01D	DNA	EFO	SRS641510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARVZT-10A-01D A43707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43707	SRX610502	"Specific Capture analysis of normal sample TARGET-30-PARVZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARVZT-10A-01D A43707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43707_1_lane_dupsFlagged.bam	SRR1424944	@dbgap@:reads/SRP012002/SRS641510/SRX610502/SRR1424944/SRR1424944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARVZT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWAM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWAM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWAM-01A-01D_TARGET-30-PARWAM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWAM-01A-01D_TARGET-30-PARWAM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWAM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWAM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-01A-01D	DNA	EFO	SRS641515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-01A-01D A43716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43716	SRX610507	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PARWAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-01A-01D A43716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43716_1_lane_dupsFlagged.bam	SRR1424949	@dbgap@:reads/SRP012002/SRS641515/SRX610507/SRR1424949/SRR1424949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWAM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWAM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWAM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWAM-01A-01D_TARGET-30-PARWAM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWAM-01A-01D_TARGET-30-PARWAM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWAM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWAM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWAM-10A-01D	DNA	EFO	SRS641476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWAM-10A-01D A43708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43708	SRX610469	"Specific Capture analysis of normal sample TARGET-30-PARWAM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWAM-10A-01D A43708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43708_1_lane_dupsFlagged.bam	SRR1424852	@dbgap@:reads/SRP012002/SRS641476/SRX610469/SRR1424852/SRR1424852.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWAM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWBC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWBC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWBC-01A-01D_TARGET-30-PARWBC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWBC-01A-01D_TARGET-30-PARWBC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWBC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWBC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-01A-01D	DNA	EFO	SRS641503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-01A-01D A43717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43717	SRX610495	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWBC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-01A-01D A43717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43717_1_lane_dupsFlagged.bam	SRR1424939	@dbgap@:reads/SRP012002/SRS641503/SRX610495/SRR1424939/SRR1424939.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWBC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWBC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWBC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWBC-01A-01D_TARGET-30-PARWBC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWBC-01A-01D_TARGET-30-PARWBC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWBC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWBC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWBC-10A-01D	DNA	EFO	SRS641509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWBC-10A-01D A43709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43709	SRX610501	"Specific Capture analysis of normal sample TARGET-30-PARWBC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWBC-10A-01D A43709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43709_1_lane_dupsFlagged.bam	SRR1424916	@dbgap@:reads/SRP012002/SRS641509/SRX610501/SRR1424916/SRR1424916.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWBC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWEH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWEH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEH-01A-01D_TARGET-30-PARWEH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEH-01A-01D_TARGET-30-PARWEH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWEH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-01A-01D	DNA	EFO	SRS641456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-01A-01D A43718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43718	SRX610448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-01A-01D A43718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43718_1_lane_dupsFlagged.bam	SRR1424938	@dbgap@:reads/SRP012002/SRS641456/SRX610448/SRR1424938/SRR1424938.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWEH-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWEH-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEH-01A-01D_TARGET-30-PARWEH-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEH-01A-01D_TARGET-30-PARWEH-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWEH-14A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEH-14A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEH-14A-01D	DNA	EFO	SRS641549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEH-14A-01D A43710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43710	SRX610542	"Specific Capture analysis of normal sample TARGET-30-PARWEH-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEH-14A-01D A43710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43710_1_lane_dupsFlagged.bam	SRR1424918	@dbgap@:reads/SRP012002/SRS641549/SRX610542/SRR1424918/SRR1424918.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEH-14A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWEV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWEV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEV-01A-01D_TARGET-30-PARWEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEV-01A-01D_TARGET-30-PARWEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWEV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-01A-01D	DNA	EFO	SRS641454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-01A-01D A43719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43719	SRX610446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-01A-01D A43719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43719_1_lane_dupsFlagged.bam	SRR1424854	@dbgap@:reads/SRP012002/SRS641454/SRX610446/SRR1424854/SRR1424854.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWEV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWEV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEV-01A-01D_TARGET-30-PARWEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWEV-01A-01D_TARGET-30-PARWEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWEV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWEV-10A-01D	DNA	EFO	SRS641546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWEV-10A-01D A43711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43711	SRX610538	"Specific Capture analysis of normal sample TARGET-30-PARWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWEV-10A-01D A43711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43711_1_lane_dupsFlagged.bam	SRR1424912	@dbgap@:reads/SRP012002/SRS641546/SRX610538/SRR1424912/SRR1424912.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWEV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWTY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWTY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWTY-01A-01D_TARGET-30-PARWTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWTY-01A-01D_TARGET-30-PARWTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWTY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWTY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-01A-01D	DNA	EFO	SRS641473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-01A-01D A43720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43720	SRX610464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARWTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-01A-01D A43720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43720_1_lane_dupsFlagged.bam	SRR1424943	@dbgap@:reads/SRP012002/SRS641473/SRX610464/SRR1424943/SRR1424943.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWTY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARWTY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARWTY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWTY-01A-01D_TARGET-30-PARWTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARWTY-01A-01D_TARGET-30-PARWTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARWTY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWTY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARWTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARWTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARWTY-10A-01D	DNA	EFO	SRS641523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARWTY-10A-01D A43712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43712	SRX610515	"Specific Capture analysis of normal sample TARGET-30-PARWTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARWTY-10A-01D A43712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43712_1_lane_dupsFlagged.bam	SRR1424846	@dbgap@:reads/SRP012002/SRS641523/SRX610515/SRR1424846/SRR1424846.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARWTY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXAX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXAX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXAX-01A-01D_TARGET-30-PARXAX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXAX-01A-01D_TARGET-30-PARXAX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXAX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXAX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-01A-01D	DNA	EFO	SRS641505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-01A-01D A43721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43721	SRX610497	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-01A-01D A43721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43721_1_lane_dupsFlagged.bam	SRR1424850	@dbgap@:reads/SRP012002/SRS641505/SRX610497/SRR1424850/SRR1424850.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXAX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXAX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXAX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXAX-01A-01D_TARGET-30-PARXAX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXAX-01A-01D_TARGET-30-PARXAX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXAX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXAX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXAX-10A-01D	DNA	EFO	SRS641465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXAX-10A-01D A43713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43713	SRX610457	"Specific Capture analysis of normal sample TARGET-30-PARXAX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXAX-10A-01D A43713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43713_1_lane_dupsFlagged.bam	SRR1424863	@dbgap@:reads/SRP012002/SRS641465/SRX610457/SRR1424863/SRR1424863.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXAX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXLL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXLL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLL-01A-01D_TARGET-30-PARXLL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLL-01A-01D_TARGET-30-PARXLL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXLL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-01A-01D	DNA	EFO	SRS641086	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-01A-01D A44915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44915	SRX610004	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-01A-01D A44915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44915_1_lane_dupsFlagged.bam	SRR1424282	@dbgap@:reads/SRP012002/SRS641086/SRX610004/SRR1424282/SRR1424282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXLL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXLL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLL-01A-01D_TARGET-30-PARXLL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLL-01A-01D_TARGET-30-PARXLL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXLL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLL-10A-01D	DNA	EFO	SRS641071	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLL-10A-01D A44907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44907	SRX609989	"Specific Capture analysis of normal sample TARGET-30-PARXLL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXLL-10A-01D A44907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44907_1_lane_dupsFlagged.bam	SRR1424182	@dbgap@:reads/SRP012002/SRS641071/SRX609989/SRR1424182/SRR1424182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXLN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXLN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLN-01A-01D_TARGET-30-PARXLN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLN-01A-01D_TARGET-30-PARXLN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXLN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-01A-01D	DNA	EFO	SRS641544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-01A-01D A43722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43722	SRX610536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-01A-01D A43722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43722_1_lane_dupsFlagged.bam	SRR1424873	@dbgap@:reads/SRP012002/SRS641544/SRX610536/SRR1424873/SRR1424873.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXLN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXLN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLN-01A-01D_TARGET-30-PARXLN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXLN-01A-01D_TARGET-30-PARXLN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXLN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXLN-10A-01D	DNA	EFO	SRS641545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXLN-10A-01D A43714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43714	SRX610537	"Specific Capture analysis of normal sample TARGET-30-PARXLN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXLN-10A-01D A43714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43714_1_lane_dupsFlagged.bam	SRR1424869	@dbgap@:reads/SRP012002/SRS641545/SRX610537/SRR1424869/SRR1424869.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXLN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXMH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXMH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMH-01A-01D_TARGET-30-PARXMH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMH-01A-01D_TARGET-30-PARXMH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXMH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-01A-01D	DNA	EFO	SRS641453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-01A-01D A43731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43731	SRX610445	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-01A-01D A43731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43731_1_lane_dupsFlagged.bam	SRR1424859	@dbgap@:reads/SRP012002/SRS641453/SRX610445/SRR1424859/SRR1424859.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXMH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXMH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMH-01A-01D_TARGET-30-PARXMH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMH-01A-01D_TARGET-30-PARXMH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXMH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMH-10A-01D	DNA	EFO	SRS641472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMH-10A-01D A43723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43723	SRX610465	"Specific Capture analysis of normal sample TARGET-30-PARXMH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMH-10A-01D A43723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43723_1_lane_dupsFlagged.bam	SRR1424875	@dbgap@:reads/SRP012002/SRS641472/SRX610465/SRR1424875/SRR1424875.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXMM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXMM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMM-01A-01D_TARGET-30-PARXMM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMM-01A-01D_TARGET-30-PARXMM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXMM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-01A-01D	DNA	EFO	SRS641516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-01A-01D A43737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43737	SRX610508	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-01A-01D A43737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43737_1_lane_dupsFlagged.bam	SRR1424888	@dbgap@:reads/SRP012002/SRS641516/SRX610508/SRR1424888/SRR1424888.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXMM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXMM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMM-01A-01D_TARGET-30-PARXMM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXMM-01A-01D_TARGET-30-PARXMM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXMM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXMM-10A-01D	DNA	EFO	SRS641541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXMM-10A-01D A43729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43729	SRX610533	"Specific Capture analysis of normal sample TARGET-30-PARXMM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXMM-10A-01D A43729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43729_1_lane_dupsFlagged.bam	SRR1424893	@dbgap@:reads/SRP012002/SRS641541/SRX610533/SRR1424893/SRR1424893.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXMM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXPD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXPD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXPD-01A-01D_TARGET-30-PARXPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXPD-01A-01D_TARGET-30-PARXPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXPD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXPD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-01A-01D	DNA	EFO	SRS641495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-01A-01D A43732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43732	SRX610487	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-01A-01D A43732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43732_1_lane_dupsFlagged.bam	SRR1424864	@dbgap@:reads/SRP012002/SRS641495/SRX610487/SRR1424864/SRR1424864.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXPD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXPD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXPD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXPD-01A-01D_TARGET-30-PARXPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXPD-01A-01D_TARGET-30-PARXPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXPD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXPD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXPD-10A-01D	DNA	EFO	SRS641490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXPD-10A-01D A43724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43724	SRX610482	"Specific Capture analysis of normal sample TARGET-30-PARXPD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXPD-10A-01D A43724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43724_1_lane_dupsFlagged.bam	SRR1424923	@dbgap@:reads/SRP012002/SRS641490/SRX610482/SRR1424923/SRR1424923.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXPD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXVA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXVA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXVA-01A-01D_TARGET-30-PARXVA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXVA-01A-01D_TARGET-30-PARXVA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXVA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXVA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-01A-01D	DNA	EFO	SRS641512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-01A-01D A43733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43733	SRX610503	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-01A-01D A43733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43733_1_lane_dupsFlagged.bam	SRR1424871	@dbgap@:reads/SRP012002/SRS641512/SRX610503/SRR1424871/SRR1424871.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXVA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXVA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXVA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXVA-01A-01D_TARGET-30-PARXVA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXVA-01A-01D_TARGET-30-PARXVA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXVA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXVA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXVA-10A-01D	DNA	EFO	SRS641459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXVA-10A-01D A43725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43725	SRX610451	"Specific Capture analysis of normal sample TARGET-30-PARXVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXVA-10A-01D A43725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43725_1_lane_dupsFlagged.bam	SRR1424898	@dbgap@:reads/SRP012002/SRS641459/SRX610451/SRR1424898/SRR1424898.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXVA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXXC-01A-01D_TARGET-30-PARXXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXXC-01A-01D_TARGET-30-PARXXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-01A-01D	DNA	EFO	SRS641483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-01A-01D A43734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43734	SRX610475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-01A-01D A43734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43734_1_lane_dupsFlagged.bam	SRR1424915	@dbgap@:reads/SRP012002/SRS641483/SRX610475/SRR1424915/SRR1424915.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXXC-01A-01D_TARGET-30-PARXXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXXC-01A-01D_TARGET-30-PARXXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXXC-10A-01D	DNA	EFO	SRS641464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXXC-10A-01D A43726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43726	SRX610456	"Specific Capture analysis of normal sample TARGET-30-PARXXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARXXC-10A-01D A43726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43726_1_lane_dupsFlagged.bam	SRR1424903	@dbgap@:reads/SRP012002/SRS641464/SRX610456/SRR1424903/SRR1424903.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXZA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXZA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXZA-01A-01D_TARGET-30-PARXZA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXZA-01A-01D_TARGET-30-PARXZA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXZA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXZA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-01A-01D	DNA	EFO	SRS641068	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-01A-01D A44916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44916	SRX609986	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARXZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-01A-01D A44916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44916_1_lane_dupsFlagged.bam	SRR1424225	@dbgap@:reads/SRP012002/SRS641068/SRX609986/SRR1424225/SRR1424225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXZA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARXZA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARXZA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXZA-01A-01D_TARGET-30-PARXZA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARXZA-01A-01D_TARGET-30-PARXZA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARXZA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXZA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARXZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARXZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARXZA-10A-01D	DNA	EFO	SRS641008	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARXZA-10A-01D A44908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44908	SRX609926	"Specific Capture analysis of normal sample TARGET-30-PARXZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PARXZA-10A-01D A44908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44908_1_lane_dupsFlagged.bam	SRR1424247	@dbgap@:reads/SRP012002/SRS641008/SRX609926/SRR1424247/SRR1424247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARXZA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYEH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYEH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYEH-01A-01D_TARGET-30-PARYEH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYEH-01A-01D_TARGET-30-PARYEH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYEH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYEH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-01A-01D	DNA	EFO	SRS641478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-01A-01D A43735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43735	SRX610471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYEH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-01A-01D A43735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43735_1_lane_dupsFlagged.bam	SRR1424889	@dbgap@:reads/SRP012002/SRS641478/SRX610471/SRR1424889/SRR1424889.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYEH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYEH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYEH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYEH-01A-01D_TARGET-30-PARYEH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYEH-01A-01D_TARGET-30-PARYEH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYEH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYEH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYEH-10A-01D	DNA	EFO	SRS641507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYEH-10A-01D A43727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43727	SRX610499	"Specific Capture analysis of normal sample TARGET-30-PARYEH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYEH-10A-01D A43727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43727_1_lane_dupsFlagged.bam	SRR1424849	@dbgap@:reads/SRP012002/SRS641507/SRX610499/SRR1424849/SRR1424849.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYEH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYRJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYRJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYRJ-01A-01D_TARGET-30-PARYRJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYRJ-01A-01D_TARGET-30-PARYRJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYRJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYRJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-01A-01D	DNA	EFO	SRS641501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-01A-01D A43738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43738	SRX610493	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYRJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-01A-01D A43738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43738_1_lane_dupsFlagged.bam	SRR1424901	@dbgap@:reads/SRP012002/SRS641501/SRX610493/SRR1424901/SRR1424901.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYRJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYRJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYRJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYRJ-01A-01D_TARGET-30-PARYRJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYRJ-01A-01D_TARGET-30-PARYRJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYRJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYRJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYRJ-10A-01D	DNA	EFO	SRS641530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYRJ-10A-01D A43730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43730	SRX610523	"Specific Capture analysis of normal sample TARGET-30-PARYRJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYRJ-10A-01D A43730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43730_1_lane_dupsFlagged.bam	SRR1424892	@dbgap@:reads/SRP012002/SRS641530/SRX610523/SRR1424892/SRR1424892.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYRJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYSR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYSR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYSR-01A-01D_TARGET-30-PARYSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYSR-01A-01D_TARGET-30-PARYSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYSR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYSR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-01A-01D	DNA	EFO	SRS641536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-01A-01D A43750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43750	SRX610528	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-01A-01D A43750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43750_1_lane_dupsFlagged.bam	SRR1424920	@dbgap@:reads/SRP012002/SRS641536/SRX610528/SRR1424920/SRR1424920.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYSR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYSR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYSR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYSR-01A-01D_TARGET-30-PARYSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYSR-01A-01D_TARGET-30-PARYSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYSR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYSR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYSR-10A-01D	DNA	EFO	SRS641521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYSR-10A-01D A43742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43742	SRX610514	"Specific Capture analysis of normal sample TARGET-30-PARYSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYSR-10A-01D A43742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43742_1_lane_dupsFlagged.bam	SRR1424931	@dbgap@:reads/SRP012002/SRS641521/SRX610514/SRR1424931/SRR1424931.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYSR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYUK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYUK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYUK-01A-01D_TARGET-30-PARYUK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYUK-01A-01D_TARGET-30-PARYUK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYUK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYUK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-01A-01D	DNA	EFO	SRS641449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-01A-01D A43748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43748	SRX610441	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYUK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-01A-01D A43748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43748_1_lane_dupsFlagged.bam	SRR1424940	@dbgap@:reads/SRP012002/SRS641449/SRX610441/SRR1424940/SRR1424940.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYUK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYUK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYUK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYUK-01A-01D_TARGET-30-PARYUK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYUK-01A-01D_TARGET-30-PARYUK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYUK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYUK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYUK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYUK-10A-01D	DNA	EFO	SRS641543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYUK-10A-01D A43740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43740	SRX610535	"Specific Capture analysis of normal sample TARGET-30-PARYUK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYUK-10A-01D A43740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43740_1_lane_dupsFlagged.bam	SRR1424858	@dbgap@:reads/SRP012002/SRS641543/SRX610535/SRR1424858/SRR1424858.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYUK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYVD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYVD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYVD-01A-01D_TARGET-30-PARYVD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYVD-01A-01D_TARGET-30-PARYVD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYVD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYVD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-01A-01D	DNA	EFO	SRS641548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-01A-01D A43747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43747	SRX610540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-01A-01D A43747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43747_1_lane_dupsFlagged.bam	SRR1424886	@dbgap@:reads/SRP012002/SRS641548/SRX610540/SRR1424886/SRR1424886.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYVD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYVD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYVD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYVD-01A-01D_TARGET-30-PARYVD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYVD-01A-01D_TARGET-30-PARYVD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYVD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYVD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYVD-10A-01D	DNA	EFO	SRS641533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYVD-10A-01D A43739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43739	SRX610525	"Specific Capture analysis of normal sample TARGET-30-PARYVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYVD-10A-01D A43739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43739_1_lane_dupsFlagged.bam	SRR1424865	@dbgap@:reads/SRP012002/SRS641533/SRX610525/SRR1424865/SRR1424865.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYVD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYWX-01A-01D_TARGET-30-PARYWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYWX-01A-01D_TARGET-30-PARYWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYWX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYWX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-01A-01D	DNA	EFO	SRS641502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-01A-01D A43749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43749	SRX610494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-01A-01D A43749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43749_1_lane_dupsFlagged.bam	SRR1424910	@dbgap@:reads/SRP012002/SRS641502/SRX610494/SRR1424910/SRR1424910.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYWX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARYWX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARYWX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYWX-01A-01D_TARGET-30-PARYWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARYWX-01A-01D_TARGET-30-PARYWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARYWX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYWX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARYWX-10A-01D	DNA	EFO	SRS641488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARYWX-10A-01D A43741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43741	SRX610478	"Specific Capture analysis of normal sample TARGET-30-PARYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARYWX-10A-01D A43741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43741_1_lane_dupsFlagged.bam	SRR1424911	@dbgap@:reads/SRP012002/SRS641488/SRX610478/SRR1424911/SRR1424911.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARYWX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZBH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZBH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZBH-01A-01D_TARGET-30-PARZBH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZBH-01A-01D_TARGET-30-PARZBH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZBH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZBH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-01A-01D	DNA	EFO	SRS641460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-01A-01D A43751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43751	SRX610452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-01A-01D A43751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43751_1_lane_dupsFlagged.bam	SRR1424927	@dbgap@:reads/SRP012002/SRS641460/SRX610452/SRR1424927/SRR1424927.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZBH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZBH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZBH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZBH-01A-01D_TARGET-30-PARZBH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZBH-01A-01D_TARGET-30-PARZBH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZBH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZBH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZBH-10A-01D	DNA	EFO	SRS641518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZBH-10A-01D A43743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43743	SRX610510	"Specific Capture analysis of normal sample TARGET-30-PARZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZBH-10A-01D A43743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43743_1_lane_dupsFlagged.bam	SRR1424847	@dbgap@:reads/SRP012002/SRS641518/SRX610510/SRR1424847/SRR1424847.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZBH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZKK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZKK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZKK-09A-01D_TARGET-30-PARZKK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZKK-09A-01D_TARGET-30-PARZKK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZKK-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZKK-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-09A-01D	DNA	EFO	SRS641451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-09A-01D A43794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43794	SRX610443	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PARZKK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-09A-01D A43794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43794_1_lane_dupsFlagged.bam	SRR1424950	@dbgap@:reads/SRP012002/SRS641451/SRX610443/SRR1424950/SRR1424950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZKK-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZKK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZKK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZKK-09A-01D_TARGET-30-PARZKK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZKK-09A-01D_TARGET-30-PARZKK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZKK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZKK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZKK-10A-01D	DNA	EFO	SRS641508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZKK-10A-01D A43786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43786	SRX610500	"Specific Capture analysis of normal sample TARGET-30-PARZKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PARZKK-10A-01D A43786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43786_1_lane_dupsFlagged.bam	SRR1424921	@dbgap@:reads/SRP012002/SRS641508/SRX610500/SRR1424921/SRR1424921.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZKK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZNV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZNV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZNV-01A-01D_TARGET-30-PARZNV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZNV-01A-01D_TARGET-30-PARZNV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZNV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZNV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-01A-01D	DNA	EFO	SRS641540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-01A-01D A43752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43752	SRX610532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZNV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-01A-01D A43752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43752_1_lane_dupsFlagged.bam	SRR1424917	@dbgap@:reads/SRP012002/SRS641540/SRX610532/SRR1424917/SRR1424917.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZNV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZNV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZNV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZNV-01A-01D_TARGET-30-PARZNV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZNV-01A-01D_TARGET-30-PARZNV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZNV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZNV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZNV-10A-01D	DNA	EFO	SRS641528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZNV-10A-01D A43744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43744	SRX610520	"Specific Capture analysis of normal sample TARGET-30-PARZNV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZNV-10A-01D A43744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43744_1_lane_dupsFlagged.bam	SRR1424922	@dbgap@:reads/SRP012002/SRS641528/SRX610520/SRR1424922/SRR1424922.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZNV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZZC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZZC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZC-01A-01D_TARGET-30-PARZZC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZC-01A-01D_TARGET-30-PARZZC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZZC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-01A-01D	DNA	EFO	SRS641487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-01A-01D A43754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43754	SRX610480	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PARZZC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-01A-01D A43754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43754_1_lane_dupsFlagged.bam	SRR1424930	@dbgap@:reads/SRP012002/SRS641487/SRX610480/SRR1424930/SRR1424930.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZZC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZZC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZC-01A-01D_TARGET-30-PARZZC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZC-01A-01D_TARGET-30-PARZZC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZZC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZC-10A-01D	DNA	EFO	SRS641482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZC-10A-01D A43746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43746	SRX610474	"Specific Capture analysis of normal sample TARGET-30-PARZZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZC-10A-01D A43746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43746_1_lane_dupsFlagged.bam	SRR1424929	@dbgap@:reads/SRP012002/SRS641482/SRX610474/SRR1424929/SRR1424929.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZZD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZZD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZD-01A-01D_TARGET-30-PARZZD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZD-01A-01D_TARGET-30-PARZZD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZZD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-01A-01D	DNA	EFO	SRS641538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-01A-01D A43753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43753	SRX610530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PARZZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-01A-01D A43753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43753_1_lane_dupsFlagged.bam	SRR1424887	@dbgap@:reads/SRP012002/SRS641538/SRX610530/SRR1424887/SRR1424887.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PARZZD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PARZZD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZD-01A-01D_TARGET-30-PARZZD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PARZZD-01A-01D_TARGET-30-PARZZD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PARZZD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PARZZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PARZZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PARZZD-10A-01D	DNA	EFO	SRS641506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PARZZD-10A-01D A43745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43745	SRX610498	"Specific Capture analysis of normal sample TARGET-30-PARZZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PARZZD-10A-01D A43745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43745_1_lane_dupsFlagged.bam	SRR1424882	@dbgap@:reads/SRP012002/SRS641506/SRX610498/SRR1424882/SRR1424882.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PARZZD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAAB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAAB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAAB-01A-01D_TARGET-30-PASAAB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAAB-01A-01D_TARGET-30-PASAAB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAAB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAAB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-01A-01D	DNA	EFO	SRS641479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-01A-01D A43761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43761	SRX610466	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-01A-01D A43761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43761_1_lane_dupsFlagged.bam	SRR1424947	@dbgap@:reads/SRP012002/SRS641479/SRX610466/SRR1424947/SRR1424947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAAB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAAB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAAB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAAB-01A-01D_TARGET-30-PASAAB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAAB-01A-01D_TARGET-30-PASAAB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAAB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAAB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAAB-10A-01D	DNA	EFO	SRS641469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAAB-10A-01D A43755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43755	SRX610462	"Specific Capture analysis of normal sample TARGET-30-PASAAB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAAB-10A-01D A43755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43755_1_lane_dupsFlagged.bam	SRR1424876	@dbgap@:reads/SRP012002/SRS641469/SRX610462/SRR1424876/SRR1424876.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAAB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAFG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAFG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAFG-01A-01D_TARGET-30-PASAFG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAFG-01A-01D_TARGET-30-PASAFG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAFG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAFG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-01A-01D	DNA	EFO	SRS641550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-01A-01D A43762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43762	SRX610541	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASAFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-01A-01D A43762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43762_1_lane_dupsFlagged.bam	SRR1424853	@dbgap@:reads/SRP012002/SRS641550/SRX610541/SRR1424853/SRR1424853.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAFG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAFG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAFG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAFG-01A-01D_TARGET-30-PASAFG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAFG-01A-01D_TARGET-30-PASAFG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAFG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAFG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAFG-10A-01D	DNA	EFO	SRS641468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAFG-10A-01D A43756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43756	SRX610460	"Specific Capture analysis of normal sample TARGET-30-PASAFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAFG-10A-01D A43756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43756_1_lane_dupsFlagged.bam	SRR1424928	@dbgap@:reads/SRP012002/SRS641468/SRX610460/SRR1424928/SRR1424928.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAFG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAHC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAHC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAHC-01A-01D_TARGET-30-PASAHC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAHC-01A-01D_TARGET-30-PASAHC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAHC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAHC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-01A-01D	DNA	EFO	SRS641031	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-01A-01D A44925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44925	SRX609949	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAHC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-01A-01D A44925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44925_1_lane_dupsFlagged.bam	SRR1424193	@dbgap@:reads/SRP012002/SRS641031/SRX609949/SRR1424193/SRR1424193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAHC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAHC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAHC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAHC-01A-01D_TARGET-30-PASAHC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAHC-01A-01D_TARGET-30-PASAHC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAHC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAHC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAHC-10A-01D	DNA	EFO	SRS641059	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAHC-10A-01D A44917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44917	SRX609977	"Specific Capture analysis of normal sample TARGET-30-PASAHC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASAHC-10A-01D A44917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44917_1_lane_dupsFlagged.bam	SRR1424277	@dbgap@:reads/SRP012002/SRS641059/SRX609977/SRR1424277/SRR1424277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAHC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAJY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAJY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAJY-01A-01D_TARGET-30-PASAJY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAJY-01A-01D_TARGET-30-PASAJY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAJY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAJY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-01A-01D	DNA	EFO	SRS641551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-01A-01D A43763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43763	SRX610543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-01A-01D A43763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43763_1_lane_dupsFlagged.bam	SRR1424855	@dbgap@:reads/SRP012002/SRS641551/SRX610543/SRR1424855/SRR1424855.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAJY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAJY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAJY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAJY-01A-01D_TARGET-30-PASAJY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAJY-01A-01D_TARGET-30-PASAJY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAJY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAJY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAJY-10A-01D	DNA	EFO	SRS641535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAJY-10A-01D A43757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43757	SRX610527	"Specific Capture analysis of normal sample TARGET-30-PASAJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASAJY-10A-01D A43757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43757_1_lane_dupsFlagged.bam	SRR1424895	@dbgap@:reads/SRP012002/SRS641535/SRX610527/SRR1424895/SRR1424895.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAJY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASALE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASALE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASALE-01A-01D_TARGET-30-PASALE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASALE-01A-01D_TARGET-30-PASALE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASALE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASALE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-01A-01D	DNA	EFO	SRS641537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-01A-01D A43765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43765	SRX610529	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASALE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-01A-01D A43765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43765_1_lane_dupsFlagged.bam	SRR1424937	@dbgap@:reads/SRP012002/SRS641537/SRX610529/SRR1424937/SRR1424937.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASALE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASALE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASALE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASALE-01A-01D_TARGET-30-PASALE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASALE-01A-01D_TARGET-30-PASALE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASALE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASALE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASALE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASALE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASALE-10A-01D	DNA	EFO	SRS641470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASALE-10A-01D A43759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43759	SRX610461	"Specific Capture analysis of normal sample TARGET-30-PASALE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASALE-10A-01D A43759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43759_1_lane_dupsFlagged.bam	SRR1424935	@dbgap@:reads/SRP012002/SRS641470/SRX610461/SRR1424935/SRR1424935.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASALE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASANE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASANE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASANE-01A-01D_TARGET-30-PASANE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASANE-01A-01D_TARGET-30-PASANE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASANE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASANE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-01A-01D	DNA	EFO	SRS641492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-01A-01D A43764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43764	SRX610484	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASANE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-01A-01D A43764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43764_1_lane_dupsFlagged.bam	SRR1424908	@dbgap@:reads/SRP012002/SRS641492/SRX610484/SRR1424908/SRR1424908.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASANE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASANE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASANE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASANE-01A-01D_TARGET-30-PASANE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASANE-01A-01D_TARGET-30-PASANE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASANE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASANE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASANE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASANE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASANE-10A-01D	DNA	EFO	SRS641466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASANE-10A-01D A43758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43758	SRX610458	"Specific Capture analysis of normal sample TARGET-30-PASANE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASANE-10A-01D A43758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43758_1_lane_dupsFlagged.bam	SRR1424942	@dbgap@:reads/SRP012002/SRS641466/SRX610458/SRR1424942/SRR1424942.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASANE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASATF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASATF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASATF-01A-01D_TARGET-30-PASATF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASATF-01A-01D_TARGET-30-PASATF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASATF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASATF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-01A-01D	DNA	EFO	SRS641499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-01A-01D A43766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43766	SRX610491	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASATF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-01A-01D A43766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43766_1_lane_dupsFlagged.bam	SRR1424851	@dbgap@:reads/SRP012002/SRS641499/SRX610491/SRR1424851/SRR1424851.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASATF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASATF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASATF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASATF-01A-01D_TARGET-30-PASATF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASATF-01A-01D_TARGET-30-PASATF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASATF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASATF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASATF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASATF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASATF-10A-01D	DNA	EFO	SRS641517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASATF-10A-01D A43760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43760	SRX610509	"Specific Capture analysis of normal sample TARGET-30-PASATF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-27	TARGET-30-PASATF-10A-01D A43760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43760_1_lane_dupsFlagged.bam	SRR1424897	@dbgap@:reads/SRP012002/SRS641517/SRX610509/SRR1424897/SRR1424897.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASATF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAVJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAVJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAVJ-01A-01D_TARGET-30-PASAVJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAVJ-01A-01D_TARGET-30-PASAVJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAVJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAVJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-01A-01D	DNA	EFO	SRS641450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-01A-01D A43791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43791	SRX610442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAVJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-01A-01D A43791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43791_1_lane_dupsFlagged.bam	SRR1424870	@dbgap@:reads/SRP012002/SRS641450/SRX610442/SRR1424870/SRR1424870.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAVJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAVJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAVJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAVJ-01A-01D_TARGET-30-PASAVJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAVJ-01A-01D_TARGET-30-PASAVJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAVJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAVJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAVJ-10A-01D	DNA	EFO	SRS641493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAVJ-10A-01D A43783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43783	SRX610485	"Specific Capture analysis of normal sample TARGET-30-PASAVJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAVJ-10A-01D A43783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43783_1_lane_dupsFlagged.bam	SRR1424884	@dbgap@:reads/SRP012002/SRS641493/SRX610485/SRR1424884/SRR1424884.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAVJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAZZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAZZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAZZ-01A-01D_TARGET-30-PASAZZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAZZ-01A-01D_TARGET-30-PASAZZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAZZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAZZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-01A-01D	DNA	EFO	SRS641498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-01A-01D A43792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43792	SRX610490	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASAZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-01A-01D A43792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43792_1_lane_dupsFlagged.bam	SRR1424946	@dbgap@:reads/SRP012002/SRS641498/SRX610490/SRR1424946/SRR1424946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAZZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASAZZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASAZZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAZZ-01A-01D_TARGET-30-PASAZZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASAZZ-01A-01D_TARGET-30-PASAZZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASAZZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAZZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASAZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASAZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASAZZ-10A-01D	DNA	EFO	SRS641480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASAZZ-10A-01D A43784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43784	SRX610472	"Specific Capture analysis of normal sample TARGET-30-PASAZZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASAZZ-10A-01D A43784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43784_1_lane_dupsFlagged.bam	SRR1424902	@dbgap@:reads/SRP012002/SRS641480/SRX610472/SRR1424902/SRR1424902.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASAZZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBDN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBDN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBDN-01A-01D_TARGET-30-PASBDN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBDN-01A-01D_TARGET-30-PASBDN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBDN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBDN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-01A-01D	DNA	EFO	SRS641457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-01A-01D A43793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43793	SRX610450	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBDN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-01A-01D A43793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43793_1_lane_dupsFlagged.bam	SRR1424919	@dbgap@:reads/SRP012002/SRS641457/SRX610450/SRR1424919/SRR1424919.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBDN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBDN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBDN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBDN-01A-01D_TARGET-30-PASBDN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBDN-01A-01D_TARGET-30-PASBDN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBDN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBDN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBDN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBDN-10A-01D	DNA	EFO	SRS641452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBDN-10A-01D A43785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43785	SRX610444	"Specific Capture analysis of normal sample TARGET-30-PASBDN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBDN-10A-01D A43785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43785_1_lane_dupsFlagged.bam	SRR1424856	@dbgap@:reads/SRP012002/SRS641452/SRX610444/SRR1424856/SRR1424856.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBDN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBJY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBJY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBJY-01A-01D_TARGET-30-PASBJY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBJY-01A-01D_TARGET-30-PASBJY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBJY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBJY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-01A-01D	DNA	EFO	SRS641023	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-01A-01D A44926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44926	SRX609941	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-01A-01D A44926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44926_1_lane_dupsFlagged.bam	SRR1424292	@dbgap@:reads/SRP012002/SRS641023/SRX609941/SRR1424292/SRR1424292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBJY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBJY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBJY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBJY-01A-01D_TARGET-30-PASBJY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBJY-01A-01D_TARGET-30-PASBJY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBJY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBJY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBJY-10A-01D	DNA	EFO	SRS641045	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBJY-10A-01D A44918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44918	SRX609963	"Specific Capture analysis of normal sample TARGET-30-PASBJY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASBJY-10A-01D A44918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44918_1_lane_dupsFlagged.bam	SRR1424188	@dbgap@:reads/SRP012002/SRS641045/SRX609963/SRR1424188/SRR1424188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBJY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBKP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBKP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBKP-01A-01D_TARGET-30-PASBKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBKP-01A-01D_TARGET-30-PASBKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBKP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBKP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-01A-01D	DNA	EFO	SRS641455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-01A-01D A43795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43795	SRX610447	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-01A-01D A43795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43795_1_lane_dupsFlagged.bam	SRR1424857	@dbgap@:reads/SRP012002/SRS641455/SRX610447/SRR1424857/SRR1424857.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBKP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBKP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBKP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBKP-01A-01D_TARGET-30-PASBKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBKP-01A-01D_TARGET-30-PASBKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBKP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBKP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBKP-10A-01D	DNA	EFO	SRS641504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBKP-10A-01D A43787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43787	SRX610496	"Specific Capture analysis of normal sample TARGET-30-PASBKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBKP-10A-01D A43787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43787_1_lane_dupsFlagged.bam	SRR1424932	@dbgap@:reads/SRP012002/SRS641504/SRX610496/SRR1424932/SRR1424932.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBKP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBMW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBMW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBMW-01A-01D_TARGET-30-PASBMW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBMW-01A-01D_TARGET-30-PASBMW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBMW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBMW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-01A-01D	DNA	EFO	SRS641616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-01A-01D A43796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43796	SRX610608	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-01A-01D A43796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43796_1_lane_dupsFlagged.bam	SRR1424952	@dbgap@:reads/SRP012002/SRS641616/SRX610608/SRR1424952/SRR1424952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBMW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBMW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBMW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBMW-01A-01D_TARGET-30-PASBMW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBMW-01A-01D_TARGET-30-PASBMW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBMW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBMW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBMW-10A-01D	DNA	EFO	SRS641494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBMW-10A-01D A43788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43788	SRX610486	"Specific Capture analysis of normal sample TARGET-30-PASBMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASBMW-10A-01D A43788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43788_1_lane_dupsFlagged.bam	SRR1424906	@dbgap@:reads/SRP012002/SRS641494/SRX610486/SRR1424906/SRR1424906.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBMW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBPN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBPN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBPN-01A-01D_TARGET-30-PASBPN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBPN-01A-01D_TARGET-30-PASBPN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBPN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBPN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-01A-01D	DNA	EFO	SRS641650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-01A-01D A43797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43797	SRX610643	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBPN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-01A-01D A43797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43797_1_lane_dupsFlagged.bam	SRR1424964	@dbgap@:reads/SRP012002/SRS641650/SRX610643/SRR1424964/SRR1424964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBPN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBPN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBPN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBPN-01A-01D_TARGET-30-PASBPN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBPN-01A-01D_TARGET-30-PASBPN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBPN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBPN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBPN-10A-01D	DNA	EFO	SRS641552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBPN-10A-01D A43789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43789	SRX610544	"Specific Capture analysis of normal sample TARGET-30-PASBPN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBPN-10A-01D A43789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43789_1_lane_dupsFlagged.bam	SRR1424877	@dbgap@:reads/SRP012002/SRS641552/SRX610544/SRR1424877/SRR1424877.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBPN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBYW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBYW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBYW-01A-01D_TARGET-30-PASBYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBYW-01A-01D_TARGET-30-PASBYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBYW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBYW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-01A-01D	DNA	EFO	SRS641588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-01A-01D A43807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43807	SRX610579	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-01A-01D A43807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43807_1_lane_dupsFlagged.bam	SRR1424989	@dbgap@:reads/SRP012002/SRS641588/SRX610579/SRR1424989/SRR1424989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBYW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBYW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBYW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBYW-01A-01D_TARGET-30-PASBYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBYW-01A-01D_TARGET-30-PASBYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBYW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBYW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBYW-10A-01D	DNA	EFO	SRS641628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBYW-10A-01D A43799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43799	SRX610620	"Specific Capture analysis of normal sample TARGET-30-PASBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBYW-10A-01D A43799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43799_1_lane_dupsFlagged.bam	SRR1425014	@dbgap@:reads/SRP012002/SRS641628/SRX610620/SRR1425014/SRR1425014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBYW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBZV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBZV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBZV-01A-01D_TARGET-30-PASBZV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBZV-01A-01D_TARGET-30-PASBZV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBZV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBZV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-01A-01D	DNA	EFO	SRS641581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-01A-01D A43798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43798	SRX610573	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASBZV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-01A-01D A43798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43798_1_lane_dupsFlagged.bam	SRR1424986	@dbgap@:reads/SRP012002/SRS641581/SRX610573/SRR1424986/SRR1424986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBZV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASBZV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASBZV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBZV-01A-01D_TARGET-30-PASBZV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASBZV-01A-01D_TARGET-30-PASBZV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASBZV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBZV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASBZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASBZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASBZV-10A-01D	DNA	EFO	SRS641463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASBZV-10A-01D A43790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43790	SRX610455	"Specific Capture analysis of normal sample TARGET-30-PASBZV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASBZV-10A-01D A43790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43790_1_lane_dupsFlagged.bam	SRR1424862	@dbgap@:reads/SRP012002/SRS641463/SRX610455/SRR1424862/SRR1424862.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASBZV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCEW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCEW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCEW-09A-01D_TARGET-30-PASCEW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCEW-09A-01D_TARGET-30-PASCEW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCEW-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCEW-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-09A-01D	DNA	EFO	SRS641611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-09A-01D A43812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43812	SRX610603	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASCEW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-09A-01D A43812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43812_1_lane_dupsFlagged.bam	SRR1425008	@dbgap@:reads/SRP012002/SRS641611/SRX610603/SRR1425008/SRR1425008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCEW-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCEW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCEW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCEW-09A-01D_TARGET-30-PASCEW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCEW-09A-01D_TARGET-30-PASCEW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCEW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCEW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCEW-10A-01D	DNA	EFO	SRS641645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCEW-10A-01D A43804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43804	SRX610637	"Specific Capture analysis of normal sample TARGET-30-PASCEW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCEW-10A-01D A43804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43804_1_lane_dupsFlagged.bam	SRR1424972	@dbgap@:reads/SRP012002/SRS641645/SRX610637/SRR1424972/SRR1424972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCEW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCFA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCFA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFA-01A-01D_TARGET-30-PASCFA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFA-01A-01D_TARGET-30-PASCFA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCFA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-01A-01D	DNA	EFO	SRS641585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-01A-01D A43808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43808	SRX610577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-01A-01D A43808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43808_1_lane_dupsFlagged.bam	SRR1424953	@dbgap@:reads/SRP012002/SRS641585/SRX610577/SRR1424953/SRR1424953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCFA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCFA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFA-01A-01D_TARGET-30-PASCFA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFA-01A-01D_TARGET-30-PASCFA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCFA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCFA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFA-10A-01D	DNA	EFO	SRS641614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFA-10A-01D A43800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43800	SRX610605	"Specific Capture analysis of normal sample TARGET-30-PASCFA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCFA-10A-01D A43800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43800_1_lane_dupsFlagged.bam	SRR1425016	@dbgap@:reads/SRP012002/SRS641614/SRX610605/SRR1425016/SRR1425016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCFD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCFD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFD-01A-01D_TARGET-30-PASCFD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFD-01A-01D_TARGET-30-PASCFD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCFD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-01A-01D	DNA	EFO	SRS641080	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-01A-01D A44927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44927	SRX609998	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-01A-01D A44927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44927_1_lane_dupsFlagged.bam	SRR1424280	@dbgap@:reads/SRP012002/SRS641080/SRX609998/SRR1424280/SRR1424280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCFD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCFD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFD-01A-01D_TARGET-30-PASCFD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCFD-01A-01D_TARGET-30-PASCFD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCFD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCFD-10A-01D	DNA	EFO	SRS641081	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCFD-10A-01D A44919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44919	SRX609999	"Specific Capture analysis of normal sample TARGET-30-PASCFD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASCFD-10A-01D A44919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44919_1_lane_dupsFlagged.bam	SRR1424228	@dbgap@:reads/SRP012002/SRS641081/SRX609999/SRR1424228/SRR1424228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCFD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCIX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCIX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCIX-09A-01D_TARGET-30-PASCIX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCIX-09A-01D_TARGET-30-PASCIX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCIX-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCIX-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-09A-01D	DNA	EFO	SRS641619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-09A-01D A43813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43813	SRX610611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCIX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-09A-01D A43813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43813_1_lane_dupsFlagged.bam	SRR1425001	@dbgap@:reads/SRP012002/SRS641619/SRX610611/SRR1425001/SRR1425001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCIX-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCIX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCIX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCIX-09A-01D_TARGET-30-PASCIX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCIX-09A-01D_TARGET-30-PASCIX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCIX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCIX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCIX-10A-01D	DNA	EFO	SRS641554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCIX-10A-01D A43805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43805	SRX610546	"Specific Capture analysis of normal sample TARGET-30-PASCIX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCIX-10A-01D A43805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43805_1_lane_dupsFlagged.bam	SRR1425050	@dbgap@:reads/SRP012002/SRS641554/SRX610546/SRR1425050/SRR1425050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCIX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCRK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCRK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCRK-01A-01D_TARGET-30-PASCRK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCRK-01A-01D_TARGET-30-PASCRK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCRK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCRK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-01A-01D	DNA	EFO	SRS641621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-01A-01D A43809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43809	SRX610613	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-01A-01D A43809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43809_1_lane_dupsFlagged.bam	SRR1424997	@dbgap@:reads/SRP012002/SRS641621/SRX610613/SRR1424997/SRR1424997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCRK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCRK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCRK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCRK-01A-01D_TARGET-30-PASCRK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCRK-01A-01D_TARGET-30-PASCRK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCRK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCRK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCRK-10A-01D	DNA	EFO	SRS641590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCRK-10A-01D A43801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43801	SRX610582	"Specific Capture analysis of normal sample TARGET-30-PASCRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCRK-10A-01D A43801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43801_1_lane_dupsFlagged.bam	SRR1424976	@dbgap@:reads/SRP012002/SRS641590/SRX610582/SRR1424976/SRR1424976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCRK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCWD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCWD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCWD-01A-01D_TARGET-30-PASCWD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCWD-01A-01D_TARGET-30-PASCWD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCWD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCWD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-01A-01D	DNA	EFO	SRS641615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-01A-01D A43810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43810	SRX610607	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-01A-01D A43810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43810_1_lane_dupsFlagged.bam	SRR1424963	@dbgap@:reads/SRP012002/SRS641615/SRX610607/SRR1424963/SRR1424963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCWD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCWD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCWD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCWD-01A-01D_TARGET-30-PASCWD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCWD-01A-01D_TARGET-30-PASCWD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCWD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCWD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCWD-10A-01D	DNA	EFO	SRS641659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCWD-10A-01D A43802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43802	SRX610651	"Specific Capture analysis of normal sample TARGET-30-PASCWD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASCWD-10A-01D A43802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43802_1_lane_dupsFlagged.bam	SRR1425023	@dbgap@:reads/SRP012002/SRS641659/SRX610651/SRR1425023/SRR1425023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCWD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCZY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCZY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCZY-01A-01D_TARGET-30-PASCZY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCZY-01A-01D_TARGET-30-PASCZY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCZY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCZY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-01A-01D	DNA	EFO	SRS641597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-01A-01D A43811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43811	SRX610589	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASCZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-01A-01D A43811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43811_1_lane_dupsFlagged.bam	SRR1425053	@dbgap@:reads/SRP012002/SRS641597/SRX610589/SRR1425053/SRR1425053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCZY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASCZY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASCZY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCZY-01A-01D_TARGET-30-PASCZY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASCZY-01A-01D_TARGET-30-PASCZY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASCZY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCZY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASCZY-10A-01D	DNA	EFO	SRS641573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASCZY-10A-01D A43803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43803	SRX610565	"Specific Capture analysis of normal sample TARGET-30-PASCZY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASCZY-10A-01D A43803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43803_1_lane_dupsFlagged.bam	SRR1424984	@dbgap@:reads/SRP012002/SRS641573/SRX610565/SRR1424984/SRR1424984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASCZY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDDP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDDP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDDP-01A-01D_TARGET-30-PASDDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDDP-01A-01D_TARGET-30-PASDDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDDP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDDP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-01A-01D	DNA	EFO	SRS641091	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-01A-01D A44928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44928	SRX610008	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-01A-01D A44928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44928_1_lane_dupsFlagged.bam	SRR1424191	@dbgap@:reads/SRP012002/SRS641091/SRX610008/SRR1424191/SRR1424191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDDP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDDP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDDP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDDP-01A-01D_TARGET-30-PASDDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDDP-01A-01D_TARGET-30-PASDDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDDP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDDP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDDP-10A-01D	DNA	EFO	SRS641074	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDDP-10A-01D A44920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44920	SRX609991	"Specific Capture analysis of normal sample TARGET-30-PASDDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDDP-10A-01D A44920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44920_1_lane_dupsFlagged.bam	SRR1424232	@dbgap@:reads/SRP012002/SRS641074/SRX609991/SRR1424232/SRR1424232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDDP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDRV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDRV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDRV-01A-01D_TARGET-30-PASDRV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDRV-01A-01D_TARGET-30-PASDRV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDRV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDRV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-01A-01D	DNA	EFO	SRS641030	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-01A-01D A44979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44979	SRX609948	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-01A-01D A44979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44979_1_lane_dupsFlagged.bam	SRR1424206	@dbgap@:reads/SRP012002/SRS641030/SRX609948/SRR1424206/SRR1424206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDRV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDRV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDRV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDRV-01A-01D_TARGET-30-PASDRV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDRV-01A-01D_TARGET-30-PASDRV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDRV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDRV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDRV-10A-01D	DNA	EFO	SRS641094	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDRV-10A-01D A44971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44971	SRX610012	"Specific Capture analysis of normal sample TARGET-30-PASDRV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASDRV-10A-01D A44971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44971_1_lane_dupsFlagged.bam	SRR1424234	@dbgap@:reads/SRP012002/SRS641094/SRX610012/SRR1424234/SRR1424234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDRV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDYT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDYT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDYT-01A-01D_TARGET-30-PASDYT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDYT-01A-01D_TARGET-30-PASDYT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDYT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDYT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-01A-01D	DNA	EFO	SRS641625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-01A-01D A43814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43814	SRX610616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASDYT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-01A-01D A43814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43814_1_lane_dupsFlagged.bam	SRR1424992	@dbgap@:reads/SRP012002/SRS641625/SRX610616/SRR1424992/SRR1424992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDYT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASDYT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASDYT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDYT-01A-01D_TARGET-30-PASDYT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASDYT-01A-01D_TARGET-30-PASDYT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASDYT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDYT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASDYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASDYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASDYT-10A-01D	DNA	EFO	SRS641580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASDYT-10A-01D A43806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43806	SRX610572	"Specific Capture analysis of normal sample TARGET-30-PASDYT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASDYT-10A-01D A43806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43806_1_lane_dupsFlagged.bam	SRR1425051	@dbgap@:reads/SRP012002/SRS641580/SRX610572/SRR1425051/SRR1425051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASDYT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEAR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEAR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEAR-01A-01D_TARGET-30-PASEAR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEAR-01A-01D_TARGET-30-PASEAR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEAR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEAR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-01A-01D	DNA	EFO	SRS641576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-01A-01D A43823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43823	SRX610567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-01A-01D A43823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43823_1_lane_dupsFlagged.bam	SRR1425003	@dbgap@:reads/SRP012002/SRS641576/SRX610567/SRR1425003/SRR1425003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEAR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEAR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEAR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEAR-01A-01D_TARGET-30-PASEAR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEAR-01A-01D_TARGET-30-PASEAR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEAR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEAR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEAR-10A-01D	DNA	EFO	SRS641563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEAR-10A-01D A43815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43815	SRX610555	"Specific Capture analysis of normal sample TARGET-30-PASEAR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEAR-10A-01D A43815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43815_1_lane_dupsFlagged.bam	SRR1425011	@dbgap@:reads/SRP012002/SRS641563/SRX610555/SRR1425011/SRR1425011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEAR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEDP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEDP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEDP-01A-01D_TARGET-30-PASEDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEDP-01A-01D_TARGET-30-PASEDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEDP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEDP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-01A-01D	DNA	EFO	SRS641604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-01A-01D A43824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43824	SRX610596	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-01A-01D A43824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43824_1_lane_dupsFlagged.bam	SRR1425034	@dbgap@:reads/SRP012002/SRS641604/SRX610596/SRR1425034/SRR1425034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEDP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEDP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEDP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEDP-01A-01D_TARGET-30-PASEDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEDP-01A-01D_TARGET-30-PASEDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEDP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEDP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEDP-10A-01D	DNA	EFO	SRS641637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEDP-10A-01D A43816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43816	SRX610629	"Specific Capture analysis of normal sample TARGET-30-PASEDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEDP-10A-01D A43816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43816_1_lane_dupsFlagged.bam	SRR1424977	@dbgap@:reads/SRP012002/SRS641637/SRX610629/SRR1424977/SRR1424977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEDP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEGF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEGF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEGF-01A-01D_TARGET-30-PASEGF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEGF-01A-01D_TARGET-30-PASEGF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEGF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEGF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-01A-01D	DNA	EFO	SRS641559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-01A-01D A43826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43826	SRX610551	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASEGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-01A-01D A43826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43826_1_lane_dupsFlagged.bam	SRR1424998	@dbgap@:reads/SRP012002/SRS641559/SRX610551/SRR1424998/SRR1424998.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEGF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEGF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEGF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEGF-01A-01D_TARGET-30-PASEGF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEGF-01A-01D_TARGET-30-PASEGF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEGF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEGF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEGF-10A-01D	DNA	EFO	SRS641555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEGF-10A-01D A43818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43818	SRX610547	"Specific Capture analysis of normal sample TARGET-30-PASEGF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEGF-10A-01D A43818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43818_1_lane_dupsFlagged.bam	SRR1425021	@dbgap@:reads/SRP012002/SRS641555/SRX610547/SRR1425021/SRR1425021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEGF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEJZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEJZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEJZ-01A-01D_TARGET-30-PASEJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEJZ-01A-01D_TARGET-30-PASEJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEJZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEJZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-01A-01D	DNA	EFO	SRS641603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-01A-01D A43825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43825	SRX610595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-01A-01D A43825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43825_1_lane_dupsFlagged.bam	SRR1425046	@dbgap@:reads/SRP012002/SRS641603/SRX610595/SRR1425046/SRR1425046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEJZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEJZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEJZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEJZ-01A-01D_TARGET-30-PASEJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEJZ-01A-01D_TARGET-30-PASEJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEJZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEJZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEJZ-10A-01D	DNA	EFO	SRS641586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEJZ-10A-01D A43817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43817	SRX610578	"Specific Capture analysis of normal sample TARGET-30-PASEJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEJZ-10A-01D A43817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43817_1_lane_dupsFlagged.bam	SRR1425039	@dbgap@:reads/SRP012002/SRS641586/SRX610578/SRR1425039/SRR1425039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEJZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASESX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASESX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASESX-01A-01D_TARGET-30-PASESX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASESX-01A-01D_TARGET-30-PASESX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASESX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASESX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-01A-01D	DNA	EFO	SRS641589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-01A-01D A43827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43827	SRX610581	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASESX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-01A-01D A43827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43827_1_lane_dupsFlagged.bam	SRR1425019	@dbgap@:reads/SRP012002/SRS641589/SRX610581/SRR1425019/SRR1425019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASESX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASESX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASESX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASESX-01A-01D_TARGET-30-PASESX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASESX-01A-01D_TARGET-30-PASESX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASESX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASESX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASESX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASESX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASESX-10A-01D	DNA	EFO	SRS641579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASESX-10A-01D A43819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43819	SRX610571	"Specific Capture analysis of normal sample TARGET-30-PASESX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASESX-10A-01D A43819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43819_1_lane_dupsFlagged.bam	SRR1424988	@dbgap@:reads/SRP012002/SRS641579/SRX610571/SRR1424988/SRR1424988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASESX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEVK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEVK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEVK-01A-01D_TARGET-30-PASEVK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEVK-01A-01D_TARGET-30-PASEVK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEVK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEVK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-01A-01D	DNA	EFO	SRS641599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-01A-01D A43828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43828	SRX610590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEVK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-01A-01D A43828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43828_1_lane_dupsFlagged.bam	SRR1424975	@dbgap@:reads/SRP012002/SRS641599/SRX610590/SRR1424975/SRR1424975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEVK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEVK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEVK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEVK-01A-01D_TARGET-30-PASEVK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEVK-01A-01D_TARGET-30-PASEVK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEVK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEVK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEVK-10A-01D	DNA	EFO	SRS641630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEVK-10A-01D A43820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43820	SRX610622	"Specific Capture analysis of normal sample TARGET-30-PASEVK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASEVK-10A-01D A43820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43820_1_lane_dupsFlagged.bam	SRR1424958	@dbgap@:reads/SRP012002/SRS641630/SRX610622/SRR1424958/SRR1424958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEVK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWX-01A-01D_TARGET-30-PASEWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWX-01A-01D_TARGET-30-PASEWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEWX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-01A-01D	DNA	EFO	SRS641020	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-01A-01D A44929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44929	SRX609938	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-01A-01D A44929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44929_1_lane_dupsFlagged.bam	SRR1424287	@dbgap@:reads/SRP012002/SRS641020/SRX609938/SRR1424287/SRR1424287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEWX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEWX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWX-01A-01D_TARGET-30-PASEWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWX-01A-01D_TARGET-30-PASEWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEWX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWX-10A-01D	DNA	EFO	SRS641044	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWX-10A-01D A44921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44921	SRX609962	"Specific Capture analysis of normal sample TARGET-30-PASEWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASEWX-10A-01D A44921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44921_1_lane_dupsFlagged.bam	SRR1424208	@dbgap@:reads/SRP012002/SRS641044/SRX609962/SRR1424208/SRR1424208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEWZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEWZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWZ-01A-01D_TARGET-30-PASEWZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWZ-01A-01D_TARGET-30-PASEWZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEWZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-01A-01D	DNA	EFO	SRS641648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-01A-01D A43829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43829	SRX610640	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-01A-01D A43829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43829_1_lane_dupsFlagged.bam	SRR1425018	@dbgap@:reads/SRP012002/SRS641648/SRX610640/SRR1425018/SRR1425018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEWZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEWZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWZ-01A-01D_TARGET-30-PASEWZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEWZ-01A-01D_TARGET-30-PASEWZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEWZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEWZ-10A-01D	DNA	EFO	SRS641567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEWZ-10A-01D A43821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43821	SRX610559	"Specific Capture analysis of normal sample TARGET-30-PASEWZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEWZ-10A-01D A43821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43821_1_lane_dupsFlagged.bam	SRR1425004	@dbgap@:reads/SRP012002/SRS641567/SRX610559/SRR1425004/SRR1425004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEWZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEYW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEYW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEYW-01A-01D_TARGET-30-PASEYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEYW-01A-01D_TARGET-30-PASEYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEYW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEYW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-01A-01D	DNA	EFO	SRS641608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-01A-01D A43830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43830	SRX610601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASEYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-01A-01D A43830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43830_1_lane_dupsFlagged.bam	SRR1424979	@dbgap@:reads/SRP012002/SRS641608/SRX610601/SRR1424979/SRR1424979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEYW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASEYW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASEYW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEYW-01A-01D_TARGET-30-PASEYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASEYW-01A-01D_TARGET-30-PASEYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASEYW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEYW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASEYW-10A-01D	DNA	EFO	SRS641557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASEYW-10A-01D A43822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43822	SRX610549	"Specific Capture analysis of normal sample TARGET-30-PASEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASEYW-10A-01D A43822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43822_1_lane_dupsFlagged.bam	SRR1425000	@dbgap@:reads/SRP012002/SRS641557/SRX610549/SRR1425000/SRR1425000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASEYW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFCG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFCG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFCG-01A-01D_TARGET-30-PASFCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFCG-01A-01D_TARGET-30-PASFCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFCG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFCG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-01A-01D	DNA	EFO	SRS641594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-01A-01D A43840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43840	SRX610586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-01A-01D A43840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43840_1_lane_dupsFlagged.bam	SRR1425047	@dbgap@:reads/SRP012002/SRS641594/SRX610586/SRR1425047/SRR1425047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFCG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFCG-14A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFCG-14A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFCG-01A-01D_TARGET-30-PASFCG-14A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFCG-01A-01D_TARGET-30-PASFCG-14A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFCG-14A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFCG-14A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFCG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFCG-14A-01D	DNA	EFO	SRS641656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFCG-14A-01D A43832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43832	SRX610648	"Specific Capture analysis of normal sample TARGET-30-PASFCG-14A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFCG-14A-01D A43832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43832_1_lane_dupsFlagged.bam	SRR1425031	@dbgap@:reads/SRP012002/SRS641656/SRX610648/SRR1425031/SRR1425031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFCG-14A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDJ-01A-01D_TARGET-30-PASFDJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDJ-01A-01D_TARGET-30-PASFDJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-01A-01D	DNA	EFO	SRS641082	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-01A-01D A44930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44930	SRX610000	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-01A-01D A44930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44930_1_lane_dupsFlagged.bam	SRR1424267	@dbgap@:reads/SRP012002/SRS641082/SRX610000/SRR1424267/SRR1424267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDJ-01A-01D_TARGET-30-PASFDJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDJ-01A-01D_TARGET-30-PASFDJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDJ-10A-01D	DNA	EFO	SRS641009	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDJ-10A-01D A44922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44922	SRX609927	"Specific Capture analysis of normal sample TARGET-30-PASFDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFDJ-10A-01D A44922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44922_1_lane_dupsFlagged.bam	SRR1424236	@dbgap@:reads/SRP012002/SRS641009/SRX609927/SRR1424236/SRR1424236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDU-01A-01D_TARGET-30-PASFDU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDU-01A-01D_TARGET-30-PASFDU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-01A-01D	DNA	EFO	SRS641651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-01A-01D A43839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43839	SRX610642	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-01A-01D A43839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43839_1_lane_dupsFlagged.bam	SRR1424968	@dbgap@:reads/SRP012002/SRS641651/SRX610642/SRR1424968/SRR1424968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDU-01A-01D_TARGET-30-PASFDU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDU-01A-01D_TARGET-30-PASFDU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDU-10A-01D	DNA	EFO	SRS641564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDU-10A-01D A43831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43831	SRX610556	"Specific Capture analysis of normal sample TARGET-30-PASFDU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDU-10A-01D A43831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43831_1_lane_dupsFlagged.bam	SRR1425030	@dbgap@:reads/SRP012002/SRS641564/SRX610556/SRR1425030/SRR1425030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDV-01A-01D_TARGET-30-PASFDV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDV-01A-01D_TARGET-30-PASFDV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-01A-01D	DNA	EFO	SRS641600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-01A-01D A43841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43841	SRX610593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-01A-01D A43841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43841_1_lane_dupsFlagged.bam	SRR1425006	@dbgap@:reads/SRP012002/SRS641600/SRX610593/SRR1425006/SRR1425006.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFDV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFDV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDV-01A-01D_TARGET-30-PASFDV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFDV-01A-01D_TARGET-30-PASFDV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFDV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFDV-10A-01D	DNA	EFO	SRS641570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFDV-10A-01D A43833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43833	SRX610562	"Specific Capture analysis of normal sample TARGET-30-PASFDV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFDV-10A-01D A43833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43833_1_lane_dupsFlagged.bam	SRR1425054	@dbgap@:reads/SRP012002/SRS641570/SRX610562/SRR1425054/SRR1425054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFDV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFEV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFEV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFEV-01A-01D_TARGET-30-PASFEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFEV-01A-01D_TARGET-30-PASFEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFEV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFEV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-01A-01D	DNA	EFO	SRS641593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-01A-01D A43842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43842	SRX610584	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-01A-01D A43842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43842_1_lane_dupsFlagged.bam	SRR1424980	@dbgap@:reads/SRP012002/SRS641593/SRX610584/SRR1424980/SRR1424980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFEV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFEV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFEV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFEV-01A-01D_TARGET-30-PASFEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFEV-01A-01D_TARGET-30-PASFEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFEV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFEV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFEV-10A-01D	DNA	EFO	SRS641574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFEV-10A-01D A43834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43834	SRX610566	"Specific Capture analysis of normal sample TARGET-30-PASFEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFEV-10A-01D A43834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43834_1_lane_dupsFlagged.bam	SRR1425012	@dbgap@:reads/SRP012002/SRS641574/SRX610566/SRR1425012/SRR1425012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFEV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFGD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFGD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFGD-01A-01D_TARGET-30-PASFGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFGD-01A-01D_TARGET-30-PASFGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFGD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFGD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-01A-01D	DNA	EFO	SRS641638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-01A-01D A43843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43843	SRX610630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-01A-01D A43843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43843_1_lane_dupsFlagged.bam	SRR1424955	@dbgap@:reads/SRP012002/SRS641638/SRX610630/SRR1424955/SRR1424955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFGD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFGD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFGD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFGD-01A-01D_TARGET-30-PASFGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFGD-01A-01D_TARGET-30-PASFGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFGD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFGD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFGD-10A-01D	DNA	EFO	SRS641568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFGD-10A-01D A43835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43835	SRX610560	"Specific Capture analysis of normal sample TARGET-30-PASFGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFGD-10A-01D A43835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43835_1_lane_dupsFlagged.bam	SRR1425040	@dbgap@:reads/SRP012002/SRS641568/SRX610560/SRR1425040/SRR1425040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFGD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFKX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFKX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFKX-01A-01D_TARGET-30-PASFKX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFKX-01A-01D_TARGET-30-PASFKX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFKX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFKX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-01A-01D	DNA	EFO	SRS641657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-01A-01D A43844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43844	SRX610649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFKX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-01A-01D A43844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43844_1_lane_dupsFlagged.bam	SRR1424959	@dbgap@:reads/SRP012002/SRS641657/SRX610649/SRR1424959/SRR1424959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFKX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFKX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFKX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFKX-01A-01D_TARGET-30-PASFKX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFKX-01A-01D_TARGET-30-PASFKX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFKX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFKX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFKX-10A-01D	DNA	EFO	SRS641571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFKX-10A-01D A43836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43836	SRX610563	"Specific Capture analysis of normal sample TARGET-30-PASFKX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASFKX-10A-01D A43836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43836_1_lane_dupsFlagged.bam	SRR1424981	@dbgap@:reads/SRP012002/SRS641571/SRX610563/SRR1424981/SRR1424981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFKX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFNF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFNF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFNF-01A-01D_TARGET-30-PASFNF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFNF-01A-01D_TARGET-30-PASFNF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFNF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFNF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-01A-01D	DNA	EFO	SRS641022	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-01A-01D A44976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44976	SRX609940	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-01A-01D A44976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44976_1_lane_dupsFlagged.bam	SRR1424186	@dbgap@:reads/SRP012002/SRS641022/SRX609940/SRR1424186/SRR1424186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFNF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFNF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFNF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFNF-01A-01D_TARGET-30-PASFNF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFNF-01A-01D_TARGET-30-PASFNF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFNF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFNF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFNF-10A-01D	DNA	EFO	SRS641102	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFNF-10A-01D A44968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44968	SRX610020	"Specific Capture analysis of normal sample TARGET-30-PASFNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASFNF-10A-01D A44968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44968_1_lane_dupsFlagged.bam	SRR1424217	@dbgap@:reads/SRP012002/SRS641102/SRX610020/SRR1424217/SRR1424217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFNF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFWL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFWL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFWL-01A-01D_TARGET-30-PASFWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFWL-01A-01D_TARGET-30-PASFWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFWL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFWL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-01A-01D	DNA	EFO	SRS641605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-01A-01D A43855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43855	SRX610597	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-01A-01D A43855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43855_1_lane_dupsFlagged.bam	SRR1424994	@dbgap@:reads/SRP012002/SRS641605/SRX610597/SRR1424994/SRR1424994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFWL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFWL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFWL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFWL-01A-01D_TARGET-30-PASFWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFWL-01A-01D_TARGET-30-PASFWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFWL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFWL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFWL-10A-01D	DNA	EFO	SRS641610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFWL-10A-01D A43847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43847	SRX610602	"Specific Capture analysis of normal sample TARGET-30-PASFWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFWL-10A-01D A43847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43847_1_lane_dupsFlagged.bam	SRR1425026	@dbgap@:reads/SRP012002/SRS641610/SRX610602/SRR1425026/SRR1425026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFWL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXC-01A-01D_TARGET-30-PASFXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXC-01A-01D_TARGET-30-PASFXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-01A-01D	DNA	EFO	SRS641626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-01A-01D A43845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43845	SRX610618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-01A-01D A43845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43845_1_lane_dupsFlagged.bam	SRR1424974	@dbgap@:reads/SRP012002/SRS641626/SRX610618/SRR1424974/SRR1424974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXC-01A-01D_TARGET-30-PASFXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXC-01A-01D_TARGET-30-PASFXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXC-10A-01D	DNA	EFO	SRS641565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXC-10A-01D A43837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43837	SRX610557	"Specific Capture analysis of normal sample TARGET-30-PASFXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXC-10A-01D A43837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43837_1_lane_dupsFlagged.bam	SRR1425022	@dbgap@:reads/SRP012002/SRS641565/SRX610557/SRR1425022/SRR1425022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFXS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFXS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXS-01A-01D_TARGET-30-PASFXS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXS-01A-01D_TARGET-30-PASFXS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFXS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-01A-01D	DNA	EFO	SRS641561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-01A-01D A43846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43846	SRX610553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASFXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-01A-01D A43846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43846_1_lane_dupsFlagged.bam	SRR1424969	@dbgap@:reads/SRP012002/SRS641561/SRX610553/SRR1424969/SRR1424969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASFXS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASFXS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXS-01A-01D_TARGET-30-PASFXS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASFXS-01A-01D_TARGET-30-PASFXS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASFXS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASFXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASFXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASFXS-10A-01D	DNA	EFO	SRS641654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASFXS-10A-01D A43838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43838	SRX610646	"Specific Capture analysis of normal sample TARGET-30-PASFXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASFXS-10A-01D A43838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43838_1_lane_dupsFlagged.bam	SRR1424985	@dbgap@:reads/SRP012002/SRS641654/SRX610646/SRR1424985/SRR1424985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASFXS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGCD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGCD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGCD-01A-01D_TARGET-30-PASGCD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGCD-01A-01D_TARGET-30-PASGCD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGCD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGCD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-01A-01D	DNA	EFO	SRS641598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-01A-01D A43856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43856	SRX610591	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-01A-01D A43856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43856_1_lane_dupsFlagged.bam	SRR1425045	@dbgap@:reads/SRP012002/SRS641598/SRX610591/SRR1425045/SRR1425045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGCD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGCD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGCD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGCD-01A-01D_TARGET-30-PASGCD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGCD-01A-01D_TARGET-30-PASGCD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGCD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGCD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGCD-10A-01D	DNA	EFO	SRS641639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGCD-10A-01D A43848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43848	SRX610631	"Specific Capture analysis of normal sample TARGET-30-PASGCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGCD-10A-01D A43848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43848_1_lane_dupsFlagged.bam	SRR1425025	@dbgap@:reads/SRP012002/SRS641639/SRX610631/SRR1425025/SRR1425025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGCD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGDB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGDB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGDB-01A-01D_TARGET-30-PASGDB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGDB-01A-01D_TARGET-30-PASGDB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGDB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGDB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-01A-01D	DNA	EFO	SRS641582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-01A-01D A43857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43857	SRX610574	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-01A-01D A43857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43857_1_lane_dupsFlagged.bam	SRR1425052	@dbgap@:reads/SRP012002/SRS641582/SRX610574/SRR1425052/SRR1425052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGDB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGDB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGDB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGDB-01A-01D_TARGET-30-PASGDB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGDB-01A-01D_TARGET-30-PASGDB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGDB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGDB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGDB-10A-01D	DNA	EFO	SRS641583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGDB-10A-01D A43849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43849	SRX610575	"Specific Capture analysis of normal sample TARGET-30-PASGDB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGDB-10A-01D A43849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43849_1_lane_dupsFlagged.bam	SRR1424996	@dbgap@:reads/SRP012002/SRS641583/SRX610575/SRR1424996/SRR1424996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGDB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGEE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGEE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGEE-01A-01D_TARGET-30-PASGEE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGEE-01A-01D_TARGET-30-PASGEE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGEE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGEE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-01A-01D	DNA	EFO	SRS641642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-01A-01D A43859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43859	SRX610634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-01A-01D A43859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43859_1_lane_dupsFlagged.bam	SRR1424966	@dbgap@:reads/SRP012002/SRS641642/SRX610634/SRR1424966/SRR1424966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGEE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGEE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGEE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGEE-01A-01D_TARGET-30-PASGEE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGEE-01A-01D_TARGET-30-PASGEE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGEE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGEE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGEE-10A-01D	DNA	EFO	SRS641602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGEE-10A-01D A43851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43851	SRX610594	"Specific Capture analysis of normal sample TARGET-30-PASGEE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGEE-10A-01D A43851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43851_1_lane_dupsFlagged.bam	SRR1425043	@dbgap@:reads/SRP012002/SRS641602/SRX610594/SRR1425043/SRR1425043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGEE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGES-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGES-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGES-01A-01D_TARGET-30-PASGES-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGES-01A-01D_TARGET-30-PASGES-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGES-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGES-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-01A-01D	DNA	EFO	SRS641631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-01A-01D A43860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43860	SRX610623	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASGES-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-01A-01D A43860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43860_1_lane_dupsFlagged.bam	SRR1425048	@dbgap@:reads/SRP012002/SRS641631/SRX610623/SRR1425048/SRR1425048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGES-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGES-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGES-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGES-01A-01D_TARGET-30-PASGES-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGES-01A-01D_TARGET-30-PASGES-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGES-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGES-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGES-10A-01D	DNA	EFO	SRS641653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGES-10A-01D A43852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43852	SRX610645	"Specific Capture analysis of normal sample TARGET-30-PASGES-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASGES-10A-01D A43852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43852_1_lane_dupsFlagged.bam	SRR1425056	@dbgap@:reads/SRP012002/SRS641653/SRX610645/SRR1425056/SRR1425056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGES-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGGI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGGI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGGI-01A-01D_TARGET-30-PASGGI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGGI-01A-01D_TARGET-30-PASGGI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGGI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGGI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-01A-01D	DNA	EFO	SRS641566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-01A-01D A43858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43858	SRX610558	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-01A-01D A43858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43858_1_lane_dupsFlagged.bam	SRR1425005	@dbgap@:reads/SRP012002/SRS641566/SRX610558/SRR1425005/SRR1425005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGGI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGGI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGGI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGGI-01A-01D_TARGET-30-PASGGI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGGI-01A-01D_TARGET-30-PASGGI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGGI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGGI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGGI-10A-01D	DNA	EFO	SRS641617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGGI-10A-01D A43850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43850	SRX610609	"Specific Capture analysis of normal sample TARGET-30-PASGGI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGGI-10A-01D A43850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43850_1_lane_dupsFlagged.bam	SRR1425015	@dbgap@:reads/SRP012002/SRS641617/SRX610609/SRR1425015/SRR1425015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGGI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGHN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGHN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGHN-01A-01D_TARGET-30-PASGHN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGHN-01A-01D_TARGET-30-PASGHN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGHN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGHN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-01A-01D	DNA	EFO	SRS641601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-01A-01D A43861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43861	SRX610592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-01A-01D A43861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43861_1_lane_dupsFlagged.bam	SRR1424993	@dbgap@:reads/SRP012002/SRS641601/SRX610592/SRR1424993/SRR1424993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGHN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGHN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGHN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGHN-01A-01D_TARGET-30-PASGHN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGHN-01A-01D_TARGET-30-PASGHN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGHN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGHN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGHN-10A-01D	DNA	EFO	SRS641635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGHN-10A-01D A43853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43853	SRX610627	"Specific Capture analysis of normal sample TARGET-30-PASGHN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGHN-10A-01D A43853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43853_1_lane_dupsFlagged.bam	SRR1424957	@dbgap@:reads/SRP012002/SRS641635/SRX610627/SRR1424957/SRR1424957.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGHN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGKP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGKP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGKP-01A-01D_TARGET-30-PASGKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGKP-01A-01D_TARGET-30-PASGKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGKP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGKP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-01A-01D	DNA	EFO	SRS641647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-01A-01D A43862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43862	SRX610638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-01A-01D A43862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43862_1_lane_dupsFlagged.bam	SRR1424990	@dbgap@:reads/SRP012002/SRS641647/SRX610638/SRR1424990/SRR1424990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGKP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGKP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGKP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGKP-01A-01D_TARGET-30-PASGKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGKP-01A-01D_TARGET-30-PASGKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGKP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGKP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGKP-10A-01D	DNA	EFO	SRS641627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGKP-10A-01D A43854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43854	SRX610619	"Specific Capture analysis of normal sample TARGET-30-PASGKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGKP-10A-01D A43854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43854_1_lane_dupsFlagged.bam	SRR1424978	@dbgap@:reads/SRP012002/SRS641627/SRX610619/SRR1424978/SRR1424978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGKP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGNT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGNT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGNT-01A-01D_TARGET-30-PASGNT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGNT-01A-01D_TARGET-30-PASGNT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGNT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGNT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-01A-01D	DNA	EFO	SRS641618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-01A-01D A43869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43869	SRX610610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASGNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-01A-01D A43869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43869_1_lane_dupsFlagged.bam	SRR1424961	@dbgap@:reads/SRP012002/SRS641618/SRX610610/SRR1424961/SRR1424961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGNT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASGNT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASGNT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGNT-01A-01D_TARGET-30-PASGNT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASGNT-01A-01D_TARGET-30-PASGNT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASGNT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGNT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASGNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASGNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASGNT-10A-01D	DNA	EFO	SRS641632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASGNT-10A-01D A43863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43863	SRX610624	"Specific Capture analysis of normal sample TARGET-30-PASGNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASGNT-10A-01D A43863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43863_1_lane_dupsFlagged.bam	SRR1425055	@dbgap@:reads/SRP012002/SRS641632/SRX610624/SRR1425055/SRR1425055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASGNT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJTA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJTA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJTA-01A-01D_TARGET-30-PASJTA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJTA-01A-01D_TARGET-30-PASJTA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJTA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJTA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-01A-01D	DNA	EFO	SRS641606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-01A-01D A43870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43870	SRX610598	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJTA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-01A-01D A43870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43870_1_lane_dupsFlagged.bam	SRR1425017	@dbgap@:reads/SRP012002/SRS641606/SRX610598/SRR1425017/SRR1425017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJTA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJTA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJTA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJTA-01A-01D_TARGET-30-PASJTA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJTA-01A-01D_TARGET-30-PASJTA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJTA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJTA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJTA-10A-01D	DNA	EFO	SRS641649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJTA-10A-01D A43864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43864	SRX610641	"Specific Capture analysis of normal sample TARGET-30-PASJTA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJTA-10A-01D A43864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43864_1_lane_dupsFlagged.bam	SRR1425049	@dbgap@:reads/SRP012002/SRS641649/SRX610641/SRR1425049/SRR1425049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJTA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJUU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJUU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJUU-01A-01D_TARGET-30-PASJUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJUU-01A-01D_TARGET-30-PASJUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJUU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJUU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-01A-01D	DNA	EFO	SRS641641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-01A-01D A43871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43871	SRX610633	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-01A-01D A43871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43871_1_lane_dupsFlagged.bam	SRR1425035	@dbgap@:reads/SRP012002/SRS641641/SRX610633/SRR1425035/SRR1425035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJUU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJUU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJUU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJUU-01A-01D_TARGET-30-PASJUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJUU-01A-01D_TARGET-30-PASJUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJUU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJUU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJUU-10A-01D	DNA	EFO	SRS641591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJUU-10A-01D A43865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43865	SRX610583	"Specific Capture analysis of normal sample TARGET-30-PASJUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJUU-10A-01D A43865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43865_1_lane_dupsFlagged.bam	SRR1424951	@dbgap@:reads/SRP012002/SRS641591/SRX610583/SRR1424951/SRR1424951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJUU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWA-01A-01D_TARGET-30-PASJWA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWA-01A-01D_TARGET-30-PASJWA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-01A-01D	DNA	EFO	SRS641090	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-01A-01D A44931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44931	SRX610009	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-01A-01D A44931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44931_1_lane_dupsFlagged.bam	SRR1424215	@dbgap@:reads/SRP012002/SRS641090/SRX610009/SRR1424215/SRR1424215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWA-01A-01D_TARGET-30-PASJWA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWA-01A-01D_TARGET-30-PASJWA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWA-10A-01D	DNA	EFO	SRS641070	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWA-10A-01D A44923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44923	SRX609988	"Specific Capture analysis of normal sample TARGET-30-PASJWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASJWA-10A-01D A44923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44923_1_lane_dupsFlagged.bam	SRR1424245	@dbgap@:reads/SRP012002/SRS641070/SRX609988/SRR1424245/SRR1424245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWG-01A-01D_TARGET-30-PASJWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWG-01A-01D_TARGET-30-PASJWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-01A-01D	DNA	EFO	SRS641607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-01A-01D A43872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43872	SRX610599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWG-01A-01D A43872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43872_1_lane_dupsFlagged.bam	SRR1424965	@dbgap@:reads/SRP012002/SRS641607/SRX610599/SRR1424965/SRR1424965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWG-01A-01D_TARGET-30-PASJWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWG-01A-01D_TARGET-30-PASJWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWG-10A-01D	DNA	EFO	SRS641613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWG-10A-01D A43866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43866	SRX610606	"Specific Capture analysis of normal sample TARGET-30-PASJWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWG-10A-01D A43866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43866_1_lane_dupsFlagged.bam	SRR1424995	@dbgap@:reads/SRP012002/SRS641613/SRX610606/SRR1424995/SRR1424995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWU-01A-01D_TARGET-30-PASJWU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWU-01A-01D_TARGET-30-PASJWU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-01A-01D	DNA	EFO	SRS641572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-01A-01D A43873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43873	SRX610564	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASJWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASJWU-01A-01D A43873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43873_1_lane_dupsFlagged.bam	SRR1425041	@dbgap@:reads/SRP012002/SRS641572/SRX610564/SRR1425041/SRR1425041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASJWU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASJWU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWU-01A-01D_TARGET-30-PASJWU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASJWU-01A-01D_TARGET-30-PASJWU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASJWU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASJWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASJWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASJWU-10A-01D	DNA	EFO	SRS641623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASJWU-10A-01D A43867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43867	SRX610615	"Specific Capture analysis of normal sample TARGET-30-PASJWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASJWU-10A-01D A43867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43867_1_lane_dupsFlagged.bam	SRR1425024	@dbgap@:reads/SRP012002/SRS641623/SRX610615/SRR1425024/SRR1425024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASJWU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKCS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKCS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKCS-01A-01D_TARGET-30-PASKCS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKCS-01A-01D_TARGET-30-PASKCS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKCS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKCS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-01A-01D	DNA	EFO	SRS641624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-01A-01D A43874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43874	SRX610617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKCS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-30-PASKCS-01A-01D A43874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43874_1_lane_dupsFlagged.bam	SRR1425033	@dbgap@:reads/SRP012002/SRS641624/SRX610617/SRR1425033/SRR1425033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKCS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKCS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKCS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKCS-01A-01D_TARGET-30-PASKCS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKCS-01A-01D_TARGET-30-PASKCS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKCS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKCS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKCS-10A-01D	DNA	EFO	SRS641560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKCS-10A-01D A43868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43868	SRX610552	"Specific Capture analysis of normal sample TARGET-30-PASKCS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKCS-10A-01D A43868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43868_1_lane_dupsFlagged.bam	SRR1424956	@dbgap@:reads/SRP012002/SRS641560/SRX610552/SRR1424956/SRR1424956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKCS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKKZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKKZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKKZ-01A-01D_TARGET-30-PASKKZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKKZ-01A-01D_TARGET-30-PASKKZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKKZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKKZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-01A-01D	DNA	EFO	SRS641629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-01A-01D A43883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43883	SRX610621	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-01A-01D A43883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43883_1_lane_dupsFlagged.bam	SRR1424982	@dbgap@:reads/SRP012002/SRS641629/SRX610621/SRR1424982/SRR1424982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKKZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKKZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKKZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKKZ-01A-01D_TARGET-30-PASKKZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKKZ-01A-01D_TARGET-30-PASKKZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKKZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKKZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKKZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKKZ-10A-01D	DNA	EFO	SRS641577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKKZ-10A-01D A43875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43875	SRX610569	"Specific Capture analysis of normal sample TARGET-30-PASKKZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKKZ-10A-01D A43875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43875_1_lane_dupsFlagged.bam	SRR1425044	@dbgap@:reads/SRP012002/SRS641577/SRX610569/SRR1425044/SRR1425044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKKZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKNK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKNK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKNK-01A-01D_TARGET-30-PASKNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKNK-01A-01D_TARGET-30-PASKNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKNK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKNK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-01A-01D	DNA	EFO	SRS641558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-01A-01D A43884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43884	SRX610550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-01A-01D A43884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43884_1_lane_dupsFlagged.bam	SRR1425042	@dbgap@:reads/SRP012002/SRS641558/SRX610550/SRR1425042/SRR1425042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKNK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKNK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKNK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKNK-01A-01D_TARGET-30-PASKNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKNK-01A-01D_TARGET-30-PASKNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKNK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKNK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKNK-10A-01D	DNA	EFO	SRS641595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKNK-10A-01D A43876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43876	SRX610588	"Specific Capture analysis of normal sample TARGET-30-PASKNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKNK-10A-01D A43876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43876_1_lane_dupsFlagged.bam	SRR1424973	@dbgap@:reads/SRP012002/SRS641595/SRX610588/SRR1424973/SRR1424973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKNK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKPC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKPC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKPC-01A-01D_TARGET-30-PASKPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKPC-01A-01D_TARGET-30-PASKPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKPC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKPC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-01A-01D	DNA	EFO	SRS641609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-01A-01D A43885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43885	SRX610600	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-01A-01D A43885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43885_1_lane_dupsFlagged.bam	SRR1425028	@dbgap@:reads/SRP012002/SRS641609/SRX610600/SRR1425028/SRR1425028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKPC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKPC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKPC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKPC-01A-01D_TARGET-30-PASKPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKPC-01A-01D_TARGET-30-PASKPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKPC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKPC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKPC-10A-01D	DNA	EFO	SRS641578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKPC-10A-01D A43877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43877	SRX610570	"Specific Capture analysis of normal sample TARGET-30-PASKPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKPC-10A-01D A43877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43877_1_lane_dupsFlagged.bam	SRR1424991	@dbgap@:reads/SRP012002/SRS641578/SRX610570/SRR1424991/SRR1424991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKPC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRA-01A-01D_TARGET-30-PASKRA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRA-01A-01D_TARGET-30-PASKRA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-01A-01D	DNA	EFO	SRS641569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-01A-01D A43886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43886	SRX610561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-01A-01D A43886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43886_1_lane_dupsFlagged.bam	SRR1424954	@dbgap@:reads/SRP012002/SRS641569/SRX610561/SRR1424954/SRR1424954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRA-01A-01D_TARGET-30-PASKRA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRA-01A-01D_TARGET-30-PASKRA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRA-10A-01D	DNA	EFO	SRS641644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRA-10A-01D A43878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43878	SRX610636	"Specific Capture analysis of normal sample TARGET-30-PASKRA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRA-10A-01D A43878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43878_1_lane_dupsFlagged.bam	SRR1425010	@dbgap@:reads/SRP012002/SRS641644/SRX610636/SRR1425010/SRR1425010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRS-01A-01D_TARGET-30-PASKRS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRS-01A-01D_TARGET-30-PASKRS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-01A-01D	DNA	EFO	SRS641584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-01A-01D A43887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43887	SRX610576	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-01A-01D A43887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43887_1_lane_dupsFlagged.bam	SRR1425037	@dbgap@:reads/SRP012002/SRS641584/SRX610576/SRR1425037/SRR1425037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRS-01A-01D_TARGET-30-PASKRS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRS-01A-01D_TARGET-30-PASKRS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRS-10A-01D	DNA	EFO	SRS641556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRS-10A-01D A43879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43879	SRX610548	"Specific Capture analysis of normal sample TARGET-30-PASKRS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRS-10A-01D A43879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43879_1_lane_dupsFlagged.bam	SRR1425029	@dbgap@:reads/SRP012002/SRS641556/SRX610548/SRR1425029/SRR1425029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRX-01A-01D_TARGET-30-PASKRX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRX-01A-01D_TARGET-30-PASKRX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-01A-01D	DNA	EFO	SRS641658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-01A-01D A43888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43888	SRX610650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-01A-01D A43888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43888_1_lane_dupsFlagged.bam	SRR1424971	@dbgap@:reads/SRP012002/SRS641658/SRX610650/SRR1424971/SRR1424971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKRX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKRX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRX-01A-01D_TARGET-30-PASKRX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKRX-01A-01D_TARGET-30-PASKRX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKRX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKRX-10A-01D	DNA	EFO	SRS641652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKRX-10A-01D A43880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43880	SRX610644	"Specific Capture analysis of normal sample TARGET-30-PASKRX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKRX-10A-01D A43880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43880_1_lane_dupsFlagged.bam	SRR1425032	@dbgap@:reads/SRP012002/SRS641652/SRX610644/SRR1425032/SRR1425032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKRX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKSR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKSR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSR-01A-01D_TARGET-30-PASKSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSR-01A-01D_TARGET-30-PASKSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKSR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-01A-01D	DNA	EFO	SRS641592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-01A-01D A43889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43889	SRX610585	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-01A-01D A43889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43889_1_lane_dupsFlagged.bam	SRR1425027	@dbgap@:reads/SRP012002/SRS641592/SRX610585/SRR1425027/SRR1425027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKSR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKSR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSR-01A-01D_TARGET-30-PASKSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSR-01A-01D_TARGET-30-PASKSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKSR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSR-10A-01D	DNA	EFO	SRS641640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSR-10A-01D A43881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43881	SRX610632	"Specific Capture analysis of normal sample TARGET-30-PASKSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSR-10A-01D A43881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43881_1_lane_dupsFlagged.bam	SRR1425007	@dbgap@:reads/SRP012002/SRS641640/SRX610632/SRR1425007/SRR1425007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKSX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKSX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSX-01A-01D_TARGET-30-PASKSX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSX-01A-01D_TARGET-30-PASKSX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKSX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-01A-01D	DNA	EFO	SRS641636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-01A-01D A43890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43890	SRX610628	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKSX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-01A-01D A43890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43890_1_lane_dupsFlagged.bam	SRR1425002	@dbgap@:reads/SRP012002/SRS641636/SRX610628/SRR1425002/SRR1425002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKSX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKSX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSX-01A-01D_TARGET-30-PASKSX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKSX-01A-01D_TARGET-30-PASKSX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKSX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKSX-10A-01D	DNA	EFO	SRS641596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKSX-10A-01D A43882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43882	SRX610587	"Specific Capture analysis of normal sample TARGET-30-PASKSX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKSX-10A-01D A43882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43882_1_lane_dupsFlagged.bam	SRR1424960	@dbgap@:reads/SRP012002/SRS641596/SRX610587/SRR1424960/SRR1424960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKSX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKYH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKYH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKYH-01A-01D_TARGET-30-PASKYH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKYH-01A-01D_TARGET-30-PASKYH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKYH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKYH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-01A-01D	DNA	EFO	SRS653989	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-01A-01D A44481 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44481	SRX645935	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKYH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-01A-01D A44481 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44481_1_lane_dupsFlagged.bam	SRR1506671	@dbgap@:reads/SRP012002/SRS653989/SRX645935/SRR1506671/SRR1506671.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKYH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKYH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKYH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKYH-01A-01D_TARGET-30-PASKYH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKYH-01A-01D_TARGET-30-PASKYH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKYH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKYH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKYH-10A-01D	DNA	EFO	SRS653973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKYH-10A-01D A44473 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44473	SRX645919	"Specific Capture analysis of normal sample TARGET-30-PASKYH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASKYH-10A-01D A44473 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44473_1_lane_dupsFlagged.bam	SRR1506652	@dbgap@:reads/SRP012002/SRS653973/SRX645919/SRR1506652/SRR1506652.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKYH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKZT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKZT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKZT-01A-01D_TARGET-30-PASKZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKZT-01A-01D_TARGET-30-PASKZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKZT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKZT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-01A-01D	DNA	EFO	SRS641620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-01A-01D A43899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43899	SRX610612	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASKZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-01A-01D A43899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43899_1_lane_dupsFlagged.bam	SRR1425009	@dbgap@:reads/SRP012002/SRS641620/SRX610612/SRR1425009/SRR1425009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKZT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASKZT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASKZT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKZT-01A-01D_TARGET-30-PASKZT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASKZT-01A-01D_TARGET-30-PASKZT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASKZT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKZT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASKZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASKZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASKZT-10A-01D	DNA	EFO	SRS641587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASKZT-10A-01D A43891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43891	SRX610580	"Specific Capture analysis of normal sample TARGET-30-PASKZT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASKZT-10A-01D A43891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43891_1_lane_dupsFlagged.bam	SRR1425036	@dbgap@:reads/SRP012002/SRS641587/SRX610580/SRR1425036/SRR1425036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASKZT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLAE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLAE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLAE-01A-01D_TARGET-30-PASLAE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLAE-01A-01D_TARGET-30-PASLAE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLAE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLAE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-01A-01D	DNA	EFO	SRS641633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-01A-01D A43900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43900	SRX610625	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASLAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-01A-01D A43900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43900_1_lane_dupsFlagged.bam	SRR1425038	@dbgap@:reads/SRP012002/SRS641633/SRX610625/SRR1425038/SRR1425038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLAE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLAE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLAE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLAE-01A-01D_TARGET-30-PASLAE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLAE-01A-01D_TARGET-30-PASLAE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLAE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLAE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLAE-10A-01D	DNA	EFO	SRS641612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLAE-10A-01D A43892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43892	SRX610604	"Specific Capture analysis of normal sample TARGET-30-PASLAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLAE-10A-01D A43892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43892_1_lane_dupsFlagged.bam	SRR1424999	@dbgap@:reads/SRP012002/SRS641612/SRX610604/SRR1424999/SRR1424999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLAE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLCD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLCD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLCD-01A-01D_TARGET-30-PASLCD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLCD-01A-01D_TARGET-30-PASLCD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLCD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLCD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-01A-01D	DNA	EFO	SRS641643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-01A-01D A43901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43901	SRX610635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLCD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-01A-01D A43901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43901_1_lane_dupsFlagged.bam	SRR1424962	@dbgap@:reads/SRP012002/SRS641643/SRX610635/SRR1424962/SRR1424962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLCD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLCD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLCD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLCD-01A-01D_TARGET-30-PASLCD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLCD-01A-01D_TARGET-30-PASLCD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLCD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLCD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLCD-10A-01D	DNA	EFO	SRS641655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLCD-10A-01D A43893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43893	SRX610647	"Specific Capture analysis of normal sample TARGET-30-PASLCD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLCD-10A-01D A43893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43893_1_lane_dupsFlagged.bam	SRR1424970	@dbgap@:reads/SRP012002/SRS641655/SRX610647/SRR1424970/SRR1424970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLCD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLDM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLDM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLDM-01A-01D_TARGET-30-PASLDM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLDM-01A-01D_TARGET-30-PASLDM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLDM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLDM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-01A-01D	DNA	EFO	SRS640555	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-01A-01D A43902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43902	SRX609248	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLDM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-01A-01D A43902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43902_1_lane_dupsFlagged.bam	SRR1423149	@dbgap@:reads/SRP012002/SRS640555/SRX609248/SRR1423149/SRR1423149.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLDM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLDM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLDM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLDM-01A-01D_TARGET-30-PASLDM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLDM-01A-01D_TARGET-30-PASLDM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLDM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLDM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLDM-10A-01D	DNA	EFO	SRS641562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLDM-10A-01D A43894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43894	SRX610554	"Specific Capture analysis of normal sample TARGET-30-PASLDM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLDM-10A-01D A43894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43894_1_lane_dupsFlagged.bam	SRR1424967	@dbgap@:reads/SRP012002/SRS641562/SRX610554/SRR1424967/SRR1424967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLDM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLFG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLFG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLFG-01A-01D_TARGET-30-PASLFG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLFG-01A-01D_TARGET-30-PASLFG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLFG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLFG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-01A-01D	DNA	EFO	SRS640539	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-01A-01D A43903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43903	SRX609233	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLFG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-01A-01D A43903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43903_1_lane_dupsFlagged.bam	SRR1423109	@dbgap@:reads/SRP012002/SRS640539/SRX609233/SRR1423109/SRR1423109.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLFG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLFG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLFG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLFG-01A-01D_TARGET-30-PASLFG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLFG-01A-01D_TARGET-30-PASLFG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLFG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLFG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLFG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLFG-10A-01D	DNA	EFO	SRS641646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLFG-10A-01D A43895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43895	SRX610639	"Specific Capture analysis of normal sample TARGET-30-PASLFG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLFG-10A-01D A43895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43895_1_lane_dupsFlagged.bam	SRR1424987	@dbgap@:reads/SRP012002/SRS641646/SRX610639/SRR1424987/SRR1424987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLFG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLGM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLGM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLGM-01A-01D_TARGET-30-PASLGM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLGM-01A-01D_TARGET-30-PASLGM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLGM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLGM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-01A-01D	DNA	EFO	SRS640517	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-01A-01D A43904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43904	SRX609210	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-01A-01D A43904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43904_1_lane_dupsFlagged.bam	SRR1423062	@dbgap@:reads/SRP012002/SRS640517/SRX609210/SRR1423062/SRR1423062.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLGM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLGM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLGM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLGM-01A-01D_TARGET-30-PASLGM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLGM-01A-01D_TARGET-30-PASLGM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLGM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLGM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLGM-10A-01D	DNA	EFO	SRS641634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLGM-10A-01D A43896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43896	SRX610626	"Specific Capture analysis of normal sample TARGET-30-PASLGM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLGM-10A-01D A43896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43896_1_lane_dupsFlagged.bam	SRR1424983	@dbgap@:reads/SRP012002/SRS641634/SRX610626/SRR1424983/SRR1424983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLGM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLIH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLIH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLIH-01A-01D_TARGET-30-PASLIH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLIH-01A-01D_TARGET-30-PASLIH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLIH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLIH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-01A-01D	DNA	EFO	SRS640499	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-01A-01D A43905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43905	SRX609192	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-01A-01D A43905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43905_1_lane_dupsFlagged.bam	SRR1423152	@dbgap@:reads/SRP012002/SRS640499/SRX609192/SRR1423152/SRR1423152.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLIH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLIH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLIH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLIH-01A-01D_TARGET-30-PASLIH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLIH-01A-01D_TARGET-30-PASLIH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLIH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLIH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLIH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLIH-10A-01D	DNA	EFO	SRS641622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLIH-10A-01D A43897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43897	SRX610614	"Specific Capture analysis of normal sample TARGET-30-PASLIH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLIH-10A-01D A43897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43897_1_lane_dupsFlagged.bam	SRR1425013	@dbgap@:reads/SRP012002/SRS641622/SRX610614/SRR1425013/SRR1425013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLIH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLMN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLMN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLMN-01A-01D_TARGET-30-PASLMN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLMN-01A-01D_TARGET-30-PASLMN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLMN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLMN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-01A-01D	DNA	EFO	SRS640553	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-01A-01D A43906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43906	SRX609246	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-01A-01D A43906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43906_1_lane_dupsFlagged.bam	SRR1423078	@dbgap@:reads/SRP012002/SRS640553/SRX609246/SRR1423078/SRR1423078.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLMN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLMN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLMN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLMN-01A-01D_TARGET-30-PASLMN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLMN-01A-01D_TARGET-30-PASLMN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLMN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLMN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLMN-10A-01D	DNA	EFO	SRS641575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLMN-10A-01D A43898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43898	SRX610568	"Specific Capture analysis of normal sample TARGET-30-PASLMN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLMN-10A-01D A43898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43898_1_lane_dupsFlagged.bam	SRR1425020	@dbgap@:reads/SRP012002/SRS641575/SRX610568/SRR1425020/SRR1425020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLMN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLPG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLPG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLPG-01A-01D_TARGET-30-PASLPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLPG-01A-01D_TARGET-30-PASLPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLPG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLPG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-01A-01D	DNA	EFO	SRS640561	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-01A-01D A43915 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43915	SRX609254	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-01A-01D A43915 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43915_1_lane_dupsFlagged.bam	SRR1423067	@dbgap@:reads/SRP012002/SRS640561/SRX609254/SRR1423067/SRR1423067.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLPG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLPG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLPG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLPG-01A-01D_TARGET-30-PASLPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLPG-01A-01D_TARGET-30-PASLPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLPG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLPG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLPG-10A-01D	DNA	EFO	SRS640516	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLPG-10A-01D A43907 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43907	SRX609209	"Specific Capture analysis of normal sample TARGET-30-PASLPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLPG-10A-01D A43907 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43907_1_lane_dupsFlagged.bam	SRR1423133	@dbgap@:reads/SRP012002/SRS640516/SRX609209/SRR1423133/SRR1423133.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLPG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLRM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLRM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLRM-01A-01D_TARGET-30-PASLRM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLRM-01A-01D_TARGET-30-PASLRM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLRM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLRM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-01A-01D	DNA	EFO	SRS640461	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-01A-01D A43916 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43916	SRX609154	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLRM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-01A-01D A43916 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43916_1_lane_dupsFlagged.bam	SRR1423068	@dbgap@:reads/SRP012002/SRS640461/SRX609154/SRR1423068/SRR1423068.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLRM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLRM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLRM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLRM-01A-01D_TARGET-30-PASLRM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLRM-01A-01D_TARGET-30-PASLRM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLRM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLRM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLRM-10A-01D	DNA	EFO	SRS640551	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLRM-10A-01D A43908 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43908	SRX609243	"Specific Capture analysis of normal sample TARGET-30-PASLRM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLRM-10A-01D A43908 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43908_1_lane_dupsFlagged.bam	SRR1423120	@dbgap@:reads/SRP012002/SRS640551/SRX609243/SRR1423120/SRR1423120.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLRM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLSS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLSS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLSS-01A-01D_TARGET-30-PASLSS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLSS-01A-01D_TARGET-30-PASLSS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLSS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLSS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-01A-01D	DNA	EFO	SRS641077	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-01A-01D A44932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44932	SRX609995	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLSS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-01A-01D A44932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44932_1_lane_dupsFlagged.bam	SRR1424264	@dbgap@:reads/SRP012002/SRS641077/SRX609995/SRR1424264/SRR1424264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLSS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLSS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLSS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLSS-01A-01D_TARGET-30-PASLSS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLSS-01A-01D_TARGET-30-PASLSS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLSS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLSS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLSS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLSS-10A-01D	DNA	EFO	SRS641047	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLSS-10A-01D A44924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44924	SRX609965	"Specific Capture analysis of normal sample TARGET-30-PASLSS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASLSS-10A-01D A44924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44924_1_lane_dupsFlagged.bam	SRR1424229	@dbgap@:reads/SRP012002/SRS641047/SRX609965/SRR1424229/SRR1424229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLSS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLTC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLTC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLTC-01A-01D_TARGET-30-PASLTC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLTC-01A-01D_TARGET-30-PASLTC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLTC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLTC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-01A-01D	DNA	EFO	SRS640471	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-01A-01D A43917 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43917	SRX609164	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-01A-01D A43917 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43917_1_lane_dupsFlagged.bam	SRR1423077	@dbgap@:reads/SRP012002/SRS640471/SRX609164/SRR1423077/SRR1423077.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLTC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLTC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLTC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLTC-01A-01D_TARGET-30-PASLTC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLTC-01A-01D_TARGET-30-PASLTC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLTC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLTC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLTC-10A-01D	DNA	EFO	SRS640492	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLTC-10A-01D A43909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43909	SRX609185	"Specific Capture analysis of normal sample TARGET-30-PASLTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLTC-10A-01D A43909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43909_1_lane_dupsFlagged.bam	SRR1423136	@dbgap@:reads/SRP012002/SRS640492/SRX609185/SRR1423136/SRR1423136.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLTC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLXS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLXS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLXS-01A-01D_TARGET-30-PASLXS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLXS-01A-01D_TARGET-30-PASLXS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLXS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLXS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-01A-01D	DNA	EFO	SRS640523	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-01A-01D A43918 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43918	SRX609216	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-01A-01D A43918 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43918_1_lane_dupsFlagged.bam	SRR1423143	@dbgap@:reads/SRP012002/SRS640523/SRX609216/SRR1423143/SRR1423143.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLXS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLXS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLXS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLXS-01A-01D_TARGET-30-PASLXS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLXS-01A-01D_TARGET-30-PASLXS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLXS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLXS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLXS-10A-01D	DNA	EFO	SRS640501	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLXS-10A-01D A43910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43910	SRX609194	"Specific Capture analysis of normal sample TARGET-30-PASLXS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLXS-10A-01D A43910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43910_1_lane_dupsFlagged.bam	SRR1423095	@dbgap@:reads/SRP012002/SRS640501/SRX609194/SRR1423095/SRR1423095.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLXS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLYF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLYF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLYF-01A-01D_TARGET-30-PASLYF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLYF-01A-01D_TARGET-30-PASLYF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLYF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLYF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-01A-01D	DNA	EFO	SRS640536	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-01A-01D A43919 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43919	SRX609230	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-01A-01D A43919 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43919_1_lane_dupsFlagged.bam	SRR1423092	@dbgap@:reads/SRP012002/SRS640536/SRX609230/SRR1423092/SRR1423092.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLYF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASLYF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASLYF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLYF-01A-01D_TARGET-30-PASLYF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASLYF-01A-01D_TARGET-30-PASLYF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASLYF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLYF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASLYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASLYF-10A-01D	DNA	EFO	SRS640520	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASLYF-10A-01D A43911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43911	SRX609213	"Specific Capture analysis of normal sample TARGET-30-PASLYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASLYF-10A-01D A43911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43911_1_lane_dupsFlagged.bam	SRR1423052	@dbgap@:reads/SRP012002/SRS640520/SRX609213/SRR1423052/SRR1423052.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASLYF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMCP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMCP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMCP-01A-01D_TARGET-30-PASMCP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMCP-01A-01D_TARGET-30-PASMCP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMCP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMCP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-01A-01D	DNA	EFO	SRS640463	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-01A-01D A43920 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43920	SRX609156	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMCP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-01A-01D A43920 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43920_1_lane_dupsFlagged.bam	SRR1423127	@dbgap@:reads/SRP012002/SRS640463/SRX609156/SRR1423127/SRR1423127.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMCP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMCP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMCP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMCP-01A-01D_TARGET-30-PASMCP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMCP-01A-01D_TARGET-30-PASMCP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMCP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMCP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMCP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMCP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMCP-10A-01D	DNA	EFO	SRS640496	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMCP-10A-01D A43912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43912	SRX609189	"Specific Capture analysis of normal sample TARGET-30-PASMCP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMCP-10A-01D A43912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43912_1_lane_dupsFlagged.bam	SRR1423101	@dbgap@:reads/SRP012002/SRS640496/SRX609189/SRR1423101/SRR1423101.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMCP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMDG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMDG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMDG-01A-01D_TARGET-30-PASMDG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMDG-01A-01D_TARGET-30-PASMDG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMDG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMDG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-01A-01D	DNA	EFO	SRS640487	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-01A-01D A43921 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43921	SRX609181	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMDG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-01A-01D A43921 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43921_1_lane_dupsFlagged.bam	SRR1423150	@dbgap@:reads/SRP012002/SRS640487/SRX609181/SRR1423150/SRR1423150.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMDG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMDG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMDG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMDG-01A-01D_TARGET-30-PASMDG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMDG-01A-01D_TARGET-30-PASMDG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMDG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMDG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMDG-10A-01D	DNA	EFO	SRS640480	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMDG-10A-01D A43913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43913	SRX609174	"Specific Capture analysis of normal sample TARGET-30-PASMDG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMDG-10A-01D A43913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43913_1_lane_dupsFlagged.bam	SRR1423116	@dbgap@:reads/SRP012002/SRS640480/SRX609174/SRR1423116/SRR1423116.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMDG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMET-01A-01D_TARGET-30-PASMET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMET-01A-01D_TARGET-30-PASMET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMET-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMET-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-01A-01D	DNA	EFO	SRS640482	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-01A-01D A43922 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43922	SRX609175	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-01A-01D A43922 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43922_1_lane_dupsFlagged.bam	SRR1423129	@dbgap@:reads/SRP012002/SRS640482/SRX609175/SRR1423129/SRR1423129.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMET-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMET-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMET-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMET-01A-01D_TARGET-30-PASMET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMET-01A-01D_TARGET-30-PASMET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMET-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMET-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMET-10A-01D	DNA	EFO	SRS640554	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMET-10A-01D A43914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43914	SRX609247	"Specific Capture analysis of normal sample TARGET-30-PASMET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMET-10A-01D A43914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43914_1_lane_dupsFlagged.bam	SRR1423121	@dbgap@:reads/SRP012002/SRS640554/SRX609247/SRR1423121/SRR1423121.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMET-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMNU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMNU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMNU-01A-01D_TARGET-30-PASMNU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMNU-01A-01D_TARGET-30-PASMNU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMNU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMNU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-01A-01D	DNA	EFO	SRS640458	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-01A-01D A43931 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43931	SRX609151	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-01A-01D A43931 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43931_1_lane_dupsFlagged.bam	SRR1423103	@dbgap@:reads/SRP012002/SRS640458/SRX609151/SRR1423103/SRR1423103.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMNU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMNU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMNU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMNU-01A-01D_TARGET-30-PASMNU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMNU-01A-01D_TARGET-30-PASMNU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMNU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMNU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMNU-10A-01D	DNA	EFO	SRS640512	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMNU-10A-01D A43923 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43923	SRX609205	"Specific Capture analysis of normal sample TARGET-30-PASMNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMNU-10A-01D A43923 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43923_1_lane_dupsFlagged.bam	SRR1423141	@dbgap@:reads/SRP012002/SRS640512/SRX609205/SRR1423141/SRR1423141.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMNU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMPT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMPT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMPT-01A-01D_TARGET-30-PASMPT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMPT-01A-01D_TARGET-30-PASMPT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMPT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMPT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-01A-01D	DNA	EFO	SRS640533	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-01A-01D A43932 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43932	SRX609227	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMPT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-01A-01D A43932 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43932_1_lane_dupsFlagged.bam	SRR1423118	@dbgap@:reads/SRP012002/SRS640533/SRX609227/SRR1423118/SRR1423118.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMPT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMPT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMPT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMPT-01A-01D_TARGET-30-PASMPT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMPT-01A-01D_TARGET-30-PASMPT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMPT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMPT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMPT-10A-01D	DNA	EFO	SRS640514	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMPT-10A-01D A43924 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43924	SRX609207	"Specific Capture analysis of normal sample TARGET-30-PASMPT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMPT-10A-01D A43924 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43924_1_lane_dupsFlagged.bam	SRR1423079	@dbgap@:reads/SRP012002/SRS640514/SRX609207/SRR1423079/SRR1423079.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMPT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMRC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMRC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMRC-01A-01D_TARGET-30-PASMRC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMRC-01A-01D_TARGET-30-PASMRC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMRC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMRC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-01A-01D	DNA	EFO	SRS640509	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-01A-01D A43933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43933	SRX609202	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-01A-01D A43933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43933_1_lane_dupsFlagged.bam	SRR1423074	@dbgap@:reads/SRP012002/SRS640509/SRX609202/SRR1423074/SRR1423074.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMRC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMRC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMRC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMRC-01A-01D_TARGET-30-PASMRC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMRC-01A-01D_TARGET-30-PASMRC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMRC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMRC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMRC-10A-01D	DNA	EFO	SRS640525	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMRC-10A-01D A43925 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43925	SRX609218	"Specific Capture analysis of normal sample TARGET-30-PASMRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMRC-10A-01D A43925 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43925_1_lane_dupsFlagged.bam	SRR1423085	@dbgap@:reads/SRP012002/SRS640525/SRX609218/SRR1423085/SRR1423085.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMRC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMUB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMUB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMUB-01A-01D_TARGET-30-PASMUB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMUB-01A-01D_TARGET-30-PASMUB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMUB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMUB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-01A-01D	DNA	EFO	SRS640530	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-01A-01D A43934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43934	SRX609223	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASMUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-01A-01D A43934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43934_1_lane_dupsFlagged.bam	SRR1423145	@dbgap@:reads/SRP012002/SRS640530/SRX609223/SRR1423145/SRR1423145.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMUB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASMUB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASMUB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMUB-01A-01D_TARGET-30-PASMUB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASMUB-01A-01D_TARGET-30-PASMUB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASMUB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMUB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASMUB-10A-01D	DNA	EFO	SRS640500	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASMUB-10A-01D A43926 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43926	SRX609193	"Specific Capture analysis of normal sample TARGET-30-PASMUB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASMUB-10A-01D A43926 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43926_1_lane_dupsFlagged.bam	SRR1423137	@dbgap@:reads/SRP012002/SRS640500/SRX609193/SRR1423137/SRR1423137.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASMUB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNMJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNMJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNMJ-01A-01D_TARGET-30-PASNMJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNMJ-01A-01D_TARGET-30-PASNMJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNMJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNMJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-01A-01D	DNA	EFO	SRS640469	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-01A-01D A43935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43935	SRX609161	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-01A-01D A43935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43935_1_lane_dupsFlagged.bam	SRR1423091	@dbgap@:reads/SRP012002/SRS640469/SRX609161/SRR1423091/SRR1423091.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNMJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNMJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNMJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNMJ-01A-01D_TARGET-30-PASNMJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNMJ-01A-01D_TARGET-30-PASNMJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNMJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNMJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNMJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNMJ-10A-01D	DNA	EFO	SRS640518	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNMJ-10A-01D A43927 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43927	SRX609211	"Specific Capture analysis of normal sample TARGET-30-PASNMJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNMJ-10A-01D A43927 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43927_1_lane_dupsFlagged.bam	SRR1423084	@dbgap@:reads/SRP012002/SRS640518/SRX609211/SRR1423084/SRR1423084.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNMJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNUI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNUI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNUI-01A-01D_TARGET-30-PASNUI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNUI-01A-01D_TARGET-30-PASNUI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNUI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNUI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-01A-01D	DNA	EFO	SRS640502	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-01A-01D A43937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43937	SRX609195	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-01A-01D A43937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43937_1_lane_dupsFlagged.bam	SRR1423146	@dbgap@:reads/SRP012002/SRS640502/SRX609195/SRR1423146/SRR1423146.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNUI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNUI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNUI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNUI-01A-01D_TARGET-30-PASNUI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNUI-01A-01D_TARGET-30-PASNUI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNUI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNUI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNUI-10A-01D	DNA	EFO	SRS640513	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNUI-10A-01D A43929 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43929	SRX609206	"Specific Capture analysis of normal sample TARGET-30-PASNUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNUI-10A-01D A43929 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43929_1_lane_dupsFlagged.bam	SRR1423081	@dbgap@:reads/SRP012002/SRS640513/SRX609206/SRR1423081/SRR1423081.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNUI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNVM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNVM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNVM-01A-01D_TARGET-30-PASNVM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNVM-01A-01D_TARGET-30-PASNVM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNVM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNVM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-01A-01D	DNA	EFO	SRS640476	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-01A-01D A43936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43936	SRX609169	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNVM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-01A-01D A43936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43936_1_lane_dupsFlagged.bam	SRR1423089	@dbgap@:reads/SRP012002/SRS640476/SRX609169/SRR1423089/SRR1423089.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNVM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNVM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNVM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNVM-01A-01D_TARGET-30-PASNVM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNVM-01A-01D_TARGET-30-PASNVM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNVM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNVM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNVM-10A-01D	DNA	EFO	SRS640537	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNVM-10A-01D A43928 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43928	SRX609231	"Specific Capture analysis of normal sample TARGET-30-PASNVM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASNVM-10A-01D A43928 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43928_1_lane_dupsFlagged.bam	SRR1423098	@dbgap@:reads/SRP012002/SRS640537/SRX609231/SRR1423098/SRR1423098.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNVM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNWH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNWH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNWH-01A-01D_TARGET-30-PASNWH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNWH-01A-01D_TARGET-30-PASNWH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNWH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNWH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-01A-01D	DNA	EFO	SRS641106	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-01A-01D A44941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44941	SRX610023	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-01A-01D A44941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44941_1_lane_dupsFlagged.bam	SRR1424290	@dbgap@:reads/SRP012002/SRS641106/SRX610023/SRR1424290/SRR1424290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNWH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASNWH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASNWH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNWH-01A-01D_TARGET-30-PASNWH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASNWH-01A-01D_TARGET-30-PASNWH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASNWH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNWH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASNWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASNWH-10A-01D	DNA	EFO	SRS641072	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASNWH-10A-01D A44933 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44933	SRX609990	"Specific Capture analysis of normal sample TARGET-30-PASNWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASNWH-10A-01D A44933 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44933_1_lane_dupsFlagged.bam	SRR1424207	@dbgap@:reads/SRP012002/SRS641072/SRX609990/SRR1424207/SRR1424207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASNWH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPBY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPBY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPBY-01A-01D_TARGET-30-PASPBY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPBY-01A-01D_TARGET-30-PASPBY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPBY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPBY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-01A-01D	DNA	EFO	SRS640464	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-01A-01D A43938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43938	SRX609157	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPBY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-01A-01D A43938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43938_1_lane_dupsFlagged.bam	SRR1423057	@dbgap@:reads/SRP012002/SRS640464/SRX609157/SRR1423057/SRR1423057.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPBY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPBY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPBY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPBY-01A-01D_TARGET-30-PASPBY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPBY-01A-01D_TARGET-30-PASPBY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPBY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPBY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPBY-10A-01D	DNA	EFO	SRS640535	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPBY-10A-01D A43930 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43930	SRX609229	"Specific Capture analysis of normal sample TARGET-30-PASPBY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPBY-10A-01D A43930 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43930_1_lane_dupsFlagged.bam	SRR1423094	@dbgap@:reads/SRP012002/SRS640535/SRX609229/SRR1423094/SRR1423094.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPBY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPGB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPGB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGB-01A-01D_TARGET-30-PASPGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGB-01A-01D_TARGET-30-PASPGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPGB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-01A-01D	DNA	EFO	SRS640521	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-01A-01D A43947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43947	SRX609215	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-01A-01D A43947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43947_1_lane_dupsFlagged.bam	SRR1423105	@dbgap@:reads/SRP012002/SRS640521/SRX609215/SRR1423105/SRR1423105.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPGB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPGB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGB-01A-01D_TARGET-30-PASPGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGB-01A-01D_TARGET-30-PASPGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPGB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGB-10A-01D	DNA	EFO	SRS640483	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGB-10A-01D A43939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43939	SRX609176	"Specific Capture analysis of normal sample TARGET-30-PASPGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPGB-10A-01D A43939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43939_1_lane_dupsFlagged.bam	SRR1423117	@dbgap@:reads/SRP012002/SRS640483/SRX609176/SRR1423117/SRR1423117.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPGU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPGU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGU-01A-01D_TARGET-30-PASPGU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGU-01A-01D_TARGET-30-PASPGU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPGU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-01A-01D	DNA	EFO	SRS641103	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-01A-01D A44973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44973	SRX610022	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-01A-01D A44973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44973_1_lane_dupsFlagged.bam	SRR1424221	@dbgap@:reads/SRP012002/SRS641103/SRX610022/SRR1424221/SRR1424221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPGU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPGU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGU-01A-01D_TARGET-30-PASPGU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPGU-01A-01D_TARGET-30-PASPGU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPGU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPGU-10A-01D	DNA	EFO	SRS641041	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPGU-10A-01D A44965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44965	SRX609958	"Specific Capture analysis of normal sample TARGET-30-PASPGU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPGU-10A-01D A44965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44965_1_lane_dupsFlagged.bam	SRR1424183	@dbgap@:reads/SRP012002/SRS641041/SRX609958/SRR1424183/SRR1424183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPGU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPIK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPIK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPIK-01A-01D_TARGET-30-PASPIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPIK-01A-01D_TARGET-30-PASPIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPIK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPIK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-01A-01D	DNA	EFO	SRS640528	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-01A-01D A43948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43948	SRX609221	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-01A-01D A43948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43948_1_lane_dupsFlagged.bam	SRR1423065	@dbgap@:reads/SRP012002/SRS640528/SRX609221/SRR1423065/SRR1423065.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPIK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPIK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPIK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPIK-01A-01D_TARGET-30-PASPIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPIK-01A-01D_TARGET-30-PASPIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPIK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPIK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPIK-10A-01D	DNA	EFO	SRS640460	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPIK-10A-01D A43940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43940	SRX609153	"Specific Capture analysis of normal sample TARGET-30-PASPIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPIK-10A-01D A43940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43940_1_lane_dupsFlagged.bam	SRR1423050	@dbgap@:reads/SRP012002/SRS640460/SRX609153/SRR1423050/SRR1423050.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPIK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPSE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPSE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPSE-01A-01D_TARGET-30-PASPSE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPSE-01A-01D_TARGET-30-PASPSE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPSE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPSE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-01A-01D	DNA	EFO	SRS641007	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-01A-01D A44942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44942	SRX609925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-01A-01D A44942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44942_1_lane_dupsFlagged.bam	SRR1424184	@dbgap@:reads/SRP012002/SRS641007/SRX609925/SRR1424184/SRR1424184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPSE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPSE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPSE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPSE-01A-01D_TARGET-30-PASPSE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPSE-01A-01D_TARGET-30-PASPSE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPSE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPSE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPSE-10A-01D	DNA	EFO	SRS641067	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPSE-10A-01D A44934 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44934	SRX609985	"Specific Capture analysis of normal sample TARGET-30-PASPSE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASPSE-10A-01D A44934 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44934_1_lane_dupsFlagged.bam	SRR1424199	@dbgap@:reads/SRP012002/SRS641067/SRX609985/SRR1424199/SRR1424199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPSE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPTF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPTF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPTF-01A-01D_TARGET-30-PASPTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPTF-01A-01D_TARGET-30-PASPTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPTF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPTF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-01A-01D	DNA	EFO	SRS640495	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-01A-01D A43949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43949	SRX609188	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-01A-01D A43949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43949_1_lane_dupsFlagged.bam	SRR1423088	@dbgap@:reads/SRP012002/SRS640495/SRX609188/SRR1423088/SRR1423088.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPTF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPTF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPTF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPTF-01A-01D_TARGET-30-PASPTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPTF-01A-01D_TARGET-30-PASPTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPTF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPTF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPTF-10A-01D	DNA	EFO	SRS640543	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPTF-10A-01D A43941 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43941	SRX609237	"Specific Capture analysis of normal sample TARGET-30-PASPTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPTF-10A-01D A43941 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43941_1_lane_dupsFlagged.bam	SRR1423114	@dbgap@:reads/SRP012002/SRS640543/SRX609237/SRR1423114/SRR1423114.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPTF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPVR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPVR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVR-09A-01D_TARGET-30-PASPVR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVR-09A-01D_TARGET-30-PASPVR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPVR-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVR-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-09A-01D	DNA	EFO	SRS640557	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-09A-01D A43950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43950	SRX609250	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVR-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-09A-01D A43950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43950_1_lane_dupsFlagged.bam	SRR1423053	@dbgap@:reads/SRP012002/SRS640557/SRX609250/SRR1423053/SRR1423053.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVR-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPVR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPVR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVR-09A-01D_TARGET-30-PASPVR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVR-09A-01D_TARGET-30-PASPVR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPVR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVR-10A-01D	DNA	EFO	SRS640478	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVR-10A-01D A43942 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43942	SRX609171	"Specific Capture analysis of normal sample TARGET-30-PASPVR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVR-10A-01D A43942 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43942_1_lane_dupsFlagged.bam	SRR1423102	@dbgap@:reads/SRP012002/SRS640478/SRX609171/SRR1423102/SRR1423102.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPVZ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPVZ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVZ-09A-01D_TARGET-30-PASPVZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVZ-09A-01D_TARGET-30-PASPVZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPVZ-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVZ-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-09A-01D	DNA	EFO	SRS640550	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-09A-01D A43951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43951	SRX609244	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPVZ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-09A-01D A43951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43951_1_lane_dupsFlagged.bam	SRR1423076	@dbgap@:reads/SRP012002/SRS640550/SRX609244/SRR1423076/SRR1423076.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVZ-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPVZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPVZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVZ-09A-01D_TARGET-30-PASPVZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPVZ-09A-01D_TARGET-30-PASPVZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPVZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPVZ-10A-01D	DNA	EFO	SRS640503	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPVZ-10A-01D A43943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43943	SRX609196	"Specific Capture analysis of normal sample TARGET-30-PASPVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPVZ-10A-01D A43943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43943_1_lane_dupsFlagged.bam	SRR1423115	@dbgap@:reads/SRP012002/SRS640503/SRX609196/SRR1423115/SRR1423115.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPVZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPXU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPXU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPXU-01A-01D_TARGET-30-PASPXU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPXU-01A-01D_TARGET-30-PASPXU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPXU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPXU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-01A-01D	DNA	EFO	SRS640468	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-01A-01D A43952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43952	SRX609162	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASPXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-01A-01D A43952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43952_1_lane_dupsFlagged.bam	SRR1423104	@dbgap@:reads/SRP012002/SRS640468/SRX609162/SRR1423104/SRR1423104.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPXU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASPXU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASPXU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPXU-01A-01D_TARGET-30-PASPXU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASPXU-01A-01D_TARGET-30-PASPXU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASPXU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPXU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASPXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASPXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASPXU-10A-01D	DNA	EFO	SRS640466	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASPXU-10A-01D A43944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43944	SRX609160	"Specific Capture analysis of normal sample TARGET-30-PASPXU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASPXU-10A-01D A43944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43944_1_lane_dupsFlagged.bam	SRR1423122	@dbgap@:reads/SRP012002/SRS640466/SRX609160/SRR1423122/SRR1423122.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASPXU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRIB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRIB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRIB-01A-01D_TARGET-30-PASRIB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRIB-01A-01D_TARGET-30-PASRIB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRIB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRIB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-01A-01D	DNA	EFO	SRS640558	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-01A-01D A43953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43953	SRX609252	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRIB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-01A-01D A43953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43953_1_lane_dupsFlagged.bam	SRR1423154	@dbgap@:reads/SRP012002/SRS640558/SRX609252/SRR1423154/SRR1423154.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRIB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRIB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRIB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRIB-01A-01D_TARGET-30-PASRIB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRIB-01A-01D_TARGET-30-PASRIB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRIB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRIB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRIB-10A-01D	DNA	EFO	SRS640489	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRIB-10A-01D A43945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43945	SRX609182	"Specific Capture analysis of normal sample TARGET-30-PASRIB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRIB-10A-01D A43945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43945_1_lane_dupsFlagged.bam	SRR1423066	@dbgap@:reads/SRP012002/SRS640489/SRX609182/SRR1423066/SRR1423066.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRIB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRLC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRLC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRLC-01A-01D_TARGET-30-PASRLC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRLC-01A-01D_TARGET-30-PASRLC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRLC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRLC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-01A-01D	DNA	EFO	SRS640507	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-01A-01D A43954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43954	SRX609200	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-01A-01D A43954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43954_1_lane_dupsFlagged.bam	SRR1423125	@dbgap@:reads/SRP012002/SRS640507/SRX609200/SRR1423125/SRR1423125.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRLC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRLC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRLC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRLC-01A-01D_TARGET-30-PASRLC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRLC-01A-01D_TARGET-30-PASRLC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRLC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRLC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRLC-10A-01D	DNA	EFO	SRS640494	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRLC-10A-01D A43946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43946	SRX609186	"Specific Capture analysis of normal sample TARGET-30-PASRLC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRLC-10A-01D A43946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43946_1_lane_dupsFlagged.bam	SRR1423073	@dbgap@:reads/SRP012002/SRS640494/SRX609186/SRR1423073/SRR1423073.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRLC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRSG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRSG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRSG-01A-01D_TARGET-30-PASRSG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRSG-01A-01D_TARGET-30-PASRSG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRSG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRSG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-01A-01D	DNA	EFO	SRS640511	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-01A-01D A43960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43960	SRX609204	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-01A-01D A43960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43960_1_lane_dupsFlagged.bam	SRR1423063	@dbgap@:reads/SRP012002/SRS640511/SRX609204/SRR1423063/SRR1423063.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRSG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRSG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRSG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRSG-01A-01D_TARGET-30-PASRSG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRSG-01A-01D_TARGET-30-PASRSG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRSG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRSG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRSG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRSG-10A-01D	DNA	EFO	SRS640544	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRSG-10A-01D A43955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43955	SRX609238	"Specific Capture analysis of normal sample TARGET-30-PASRSG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASRSG-10A-01D A43955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43955_1_lane_dupsFlagged.bam	SRR1423056	@dbgap@:reads/SRP012002/SRS640544/SRX609238/SRR1423056/SRR1423056.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRSG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRWE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRWE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRWE-01A-01D_TARGET-30-PASRWE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRWE-01A-01D_TARGET-30-PASRWE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRWE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRWE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-01A-01D	DNA	EFO	SRS640960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-01A-01D A44503 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44503	SRX609653	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASRWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-01A-01D A44503 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44503_1_lane_dupsFlagged.bam	SRR1423554	@dbgap@:reads/SRP012002/SRS640960/SRX609653/SRR1423554/SRR1423554.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRWE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASRWE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASRWE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRWE-01A-01D_TARGET-30-PASRWE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASRWE-01A-01D_TARGET-30-PASRWE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASRWE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRWE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASRWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASRWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASRWE-10A-01D	DNA	EFO	SRS640898	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASRWE-10A-01D A44495 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44495	SRX609591	"Specific Capture analysis of normal sample TARGET-30-PASRWE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASRWE-10A-01D A44495 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44495_1_lane_dupsFlagged.bam	SRR1423538	@dbgap@:reads/SRP012002/SRS640898/SRX609591/SRR1423538/SRR1423538.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASRWE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSEC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSEC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSEC-01A-01D_TARGET-30-PASSEC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSEC-01A-01D_TARGET-30-PASSEC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSEC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSEC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-01A-01D	DNA	EFO	SRS640529	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-01A-01D A43961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43961	SRX609222	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-01A-01D A43961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43961_1_lane_dupsFlagged.bam	SRR1423147	@dbgap@:reads/SRP012002/SRS640529/SRX609222/SRR1423147/SRR1423147.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSEC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSEC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSEC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSEC-01A-01D_TARGET-30-PASSEC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSEC-01A-01D_TARGET-30-PASSEC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSEC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSEC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSEC-10A-01D	DNA	EFO	SRS640519	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSEC-10A-01D A43956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43956	SRX609212	"Specific Capture analysis of normal sample TARGET-30-PASSEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSEC-10A-01D A43956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43956_1_lane_dupsFlagged.bam	SRR1423093	@dbgap@:reads/SRP012002/SRS640519/SRX609212/SRR1423093/SRR1423093.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSEC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSGT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSGT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSGT-01A-01D_TARGET-30-PASSGT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSGT-01A-01D_TARGET-30-PASSGT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSGT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSGT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-01A-01D	DNA	EFO	SRS640475	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-01A-01D A43962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43962	SRX609168	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASSGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-01A-01D A43962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43962_1_lane_dupsFlagged.bam	SRR1423099	@dbgap@:reads/SRP012002/SRS640475/SRX609168/SRR1423099/SRR1423099.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSGT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSGT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSGT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSGT-01A-01D_TARGET-30-PASSGT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSGT-01A-01D_TARGET-30-PASSGT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSGT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSGT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSGT-10A-01D	DNA	EFO	SRS640541	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSGT-10A-01D A43957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43957	SRX609235	"Specific Capture analysis of normal sample TARGET-30-PASSGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSGT-10A-01D A43957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43957_1_lane_dupsFlagged.bam	SRR1423097	@dbgap@:reads/SRP012002/SRS640541/SRX609235/SRR1423097/SRR1423097.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSGT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSII-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSII-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSII-01A-01D_TARGET-30-PASSII-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSII-01A-01D_TARGET-30-PASSII-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSII-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSII-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-01A-01D	DNA	EFO	SRS640562	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-01A-01D A43964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43964	SRX609255	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-01A-01D A43964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43964_1_lane_dupsFlagged.bam	SRR1423128	@dbgap@:reads/SRP012002/SRS640562/SRX609255/SRR1423128/SRR1423128.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSII-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSII-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSII-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSII-01A-01D_TARGET-30-PASSII-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSII-01A-01D_TARGET-30-PASSII-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSII-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSII-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSII-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSII-10A-01D	DNA	EFO	SRS640526	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSII-10A-01D A43959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43959	SRX609219	"Specific Capture analysis of normal sample TARGET-30-PASSII-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSII-10A-01D A43959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43959_1_lane_dupsFlagged.bam	SRR1423153	@dbgap@:reads/SRP012002/SRS640526/SRX609219/SRR1423153/SRR1423153.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSII-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSJK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSJK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSJK-01A-01D_TARGET-30-PASSJK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSJK-01A-01D_TARGET-30-PASSJK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSJK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSJK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-01A-01D	DNA	EFO	SRS640510	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-01A-01D A43963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43963	SRX609203	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-01A-01D A43963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43963_1_lane_dupsFlagged.bam	SRR1423140	@dbgap@:reads/SRP012002/SRS640510/SRX609203/SRR1423140/SRR1423140.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSJK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSJK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSJK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSJK-01A-01D_TARGET-30-PASSJK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSJK-01A-01D_TARGET-30-PASSJK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSJK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSJK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSJK-10A-01D	DNA	EFO	SRS640459	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSJK-10A-01D A43958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43958	SRX609152	"Specific Capture analysis of normal sample TARGET-30-PASSJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-25	TARGET-30-PASSJK-10A-01D A43958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43958_1_lane_dupsFlagged.bam	SRR1423123	@dbgap@:reads/SRP012002/SRS640459/SRX609152/SRR1423123/SRR1423123.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSJK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSNN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSNN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSNN-01A-01D_TARGET-30-PASSNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSNN-01A-01D_TARGET-30-PASSNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSNN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSNN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-01A-01D	DNA	EFO	SRS640900	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-01A-01D A44819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44819	SRX609593	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-01A-01D A44819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44819_1_lane_dupsFlagged.bam	SRR1423553	@dbgap@:reads/SRP012002/SRS640900/SRX609593/SRR1423553/SRR1423553.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSNN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSNN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSNN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSNN-01A-01D_TARGET-30-PASSNN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSNN-01A-01D_TARGET-30-PASSNN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSNN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSNN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSNN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSNN-10A-01D	DNA	EFO	SRS640921	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSNN-10A-01D A44811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44811	SRX609614	"Specific Capture analysis of normal sample TARGET-30-PASSNN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSNN-10A-01D A44811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44811_1_lane_dupsFlagged.bam	SRR1423547	@dbgap@:reads/SRP012002/SRS640921/SRX609614/SRR1423547/SRR1423547.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSNN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSPI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSPI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSPI-01A-01D_TARGET-30-PASSPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSPI-01A-01D_TARGET-30-PASSPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSPI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSPI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-01A-01D	DNA	EFO	SRS640908	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-01A-01D A44818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44818	SRX609601	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-01A-01D A44818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44818_1_lane_dupsFlagged.bam	SRR1423530	@dbgap@:reads/SRP012002/SRS640908/SRX609601/SRR1423530/SRR1423530.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSPI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSPI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSPI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSPI-01A-01D_TARGET-30-PASSPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSPI-01A-01D_TARGET-30-PASSPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSPI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSPI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSPI-10A-01D	DNA	EFO	SRS640896	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSPI-10A-01D A44810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44810	SRX609589	"Specific Capture analysis of normal sample TARGET-30-PASSPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PASSPI-10A-01D A44810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44810_1_lane_dupsFlagged.bam	SRR1423533	@dbgap@:reads/SRP012002/SRS640896/SRX609589/SRR1423533/SRR1423533.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSPI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSUU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSUU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSUU-01A-01D_TARGET-30-PASSUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSUU-01A-01D_TARGET-30-PASSUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSUU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSUU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-01A-01D	DNA	EFO	SRS640488	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-01A-01D A43973 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43973	SRX609180	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSUU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-01A-01D A43973 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43973_1_lane_dupsFlagged.bam	SRR1423055	@dbgap@:reads/SRP012002/SRS640488/SRX609180/SRR1423055/SRR1423055.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSUU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSUU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSUU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSUU-01A-01D_TARGET-30-PASSUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSUU-01A-01D_TARGET-30-PASSUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSUU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSUU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSUU-10A-01D	DNA	EFO	SRS640531	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSUU-10A-01D A43965 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43965	SRX609224	"Specific Capture analysis of normal sample TARGET-30-PASSUU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSUU-10A-01D A43965 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43965_1_lane_dupsFlagged.bam	SRR1423151	@dbgap@:reads/SRP012002/SRS640531/SRX609224/SRR1423151/SRR1423151.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSUU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSXA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSXA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSXA-01A-01D_TARGET-30-PASSXA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSXA-01A-01D_TARGET-30-PASSXA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSXA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSXA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-01A-01D	DNA	EFO	SRS640497	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-01A-01D A43974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43974	SRX609190	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-01A-01D A43974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43974_1_lane_dupsFlagged.bam	SRR1423080	@dbgap@:reads/SRP012002/SRS640497/SRX609190/SRR1423080/SRR1423080.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSXA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSXA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSXA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSXA-01A-01D_TARGET-30-PASSXA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSXA-01A-01D_TARGET-30-PASSXA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSXA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSXA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSXA-10A-01D	DNA	EFO	SRS640462	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSXA-10A-01D A43966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43966	SRX609155	"Specific Capture analysis of normal sample TARGET-30-PASSXA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSXA-10A-01D A43966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43966_1_lane_dupsFlagged.bam	SRR1423107	@dbgap@:reads/SRP012002/SRS640462/SRX609155/SRR1423107/SRR1423107.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSXA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSZI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSZI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSZI-01A-01D_TARGET-30-PASSZI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSZI-01A-01D_TARGET-30-PASSZI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSZI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSZI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-01A-01D	DNA	EFO	SRS640481	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-01A-01D A43975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43975	SRX609173	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASSZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-01A-01D A43975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43975_1_lane_dupsFlagged.bam	SRR1423064	@dbgap@:reads/SRP012002/SRS640481/SRX609173/SRR1423064/SRR1423064.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSZI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASSZI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASSZI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSZI-01A-01D_TARGET-30-PASSZI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASSZI-01A-01D_TARGET-30-PASSZI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASSZI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSZI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASSZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASSZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASSZI-10A-01D	DNA	EFO	SRS640506	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASSZI-10A-01D A43967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43967	SRX609199	"Specific Capture analysis of normal sample TARGET-30-PASSZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASSZI-10A-01D A43967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43967_1_lane_dupsFlagged.bam	SRR1423132	@dbgap@:reads/SRP012002/SRS640506/SRX609199/SRR1423132/SRR1423132.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASSZI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTDT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTDT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTDT-01A-01D_TARGET-30-PASTDT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTDT-01A-01D_TARGET-30-PASTDT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTDT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTDT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-01A-01D	DNA	EFO	SRS640467	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-01A-01D A43976 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43976	SRX609159	"Specific Capture analysis of maturing Ganglioneuroma sample TARGET-30-PASTDT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-01A-01D A43976 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43976_1_lane_dupsFlagged.bam	SRR1423070	@dbgap@:reads/SRP012002/SRS640467/SRX609159/SRR1423070/SRR1423070.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTDT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTDT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTDT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTDT-01A-01D_TARGET-30-PASTDT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTDT-01A-01D_TARGET-30-PASTDT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTDT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTDT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTDT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTDT-10A-01D	DNA	EFO	SRS640515	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTDT-10A-01D A43968 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43968	SRX609208	"Specific Capture analysis of normal sample TARGET-30-PASTDT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTDT-10A-01D A43968 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43968_1_lane_dupsFlagged.bam	SRR1423061	@dbgap@:reads/SRP012002/SRS640515/SRX609208/SRR1423061/SRR1423061.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTDT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTGD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTGD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGD-01A-01D_TARGET-30-PASTGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGD-01A-01D_TARGET-30-PASTGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTGD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-01A-01D	DNA	EFO	SRS640538	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-01A-01D A43977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43977	SRX609232	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-01A-01D A43977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43977_1_lane_dupsFlagged.bam	SRR1423075	@dbgap@:reads/SRP012002/SRS640538/SRX609232/SRR1423075/SRR1423075.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTGD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTGD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGD-01A-01D_TARGET-30-PASTGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGD-01A-01D_TARGET-30-PASTGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTGD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGD-10A-01D	DNA	EFO	SRS640524	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGD-10A-01D A43969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43969	SRX609217	"Specific Capture analysis of normal sample TARGET-30-PASTGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGD-10A-01D A43969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43969_1_lane_dupsFlagged.bam	SRR1423110	@dbgap@:reads/SRP012002/SRS640524/SRX609217/SRR1423110/SRR1423110.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTGH-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTGH-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGH-09A-01D_TARGET-30-PASTGH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGH-09A-01D_TARGET-30-PASTGH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTGH-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGH-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-09A-01D	DNA	EFO	SRS640491	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-09A-01D A43978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43978	SRX609184	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTGH-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-09A-01D A43978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43978_1_lane_dupsFlagged.bam	SRR1423119	@dbgap@:reads/SRP012002/SRS640491/SRX609184/SRR1423119/SRR1423119.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGH-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTGH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTGH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGH-09A-01D_TARGET-30-PASTGH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTGH-09A-01D_TARGET-30-PASTGH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTGH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTGH-10A-01D	DNA	EFO	SRS640498	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTGH-10A-01D A43970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43970	SRX609191	"Specific Capture analysis of normal sample TARGET-30-PASTGH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTGH-10A-01D A43970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43970_1_lane_dupsFlagged.bam	SRR1423148	@dbgap@:reads/SRP012002/SRS640498/SRX609191/SRR1423148/SRR1423148.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTGH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTHF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTHF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTHF-01A-01D_TARGET-30-PASTHF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTHF-01A-01D_TARGET-30-PASTHF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTHF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTHF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-01A-01D	DNA	EFO	SRS640522	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-01A-01D A43979 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43979	SRX609214	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-01A-01D A43979 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43979_1_lane_dupsFlagged.bam	SRR1423113	@dbgap@:reads/SRP012002/SRS640522/SRX609214/SRR1423113/SRR1423113.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTHF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTHF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTHF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTHF-01A-01D_TARGET-30-PASTHF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTHF-01A-01D_TARGET-30-PASTHF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTHF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTHF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTHF-10A-01D	DNA	EFO	SRS640552	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTHF-10A-01D A43971 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43971	SRX609245	"Specific Capture analysis of normal sample TARGET-30-PASTHF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTHF-10A-01D A43971 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43971_1_lane_dupsFlagged.bam	SRR1423082	@dbgap@:reads/SRP012002/SRS640552/SRX609245/SRR1423082/SRR1423082.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTHF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTIJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTIJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTIJ-01A-01D_TARGET-30-PASTIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTIJ-01A-01D_TARGET-30-PASTIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTIJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTIJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-01A-01D	DNA	EFO	SRS640532	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-01A-01D A43989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43989	SRX609225	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-01A-01D A43989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43989_1_lane_dupsFlagged.bam	SRR1423054	@dbgap@:reads/SRP012002/SRS640532/SRX609225/SRR1423054/SRR1423054.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTIJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTIJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTIJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTIJ-01A-01D_TARGET-30-PASTIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTIJ-01A-01D_TARGET-30-PASTIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTIJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTIJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTIJ-10A-01D	DNA	EFO	SRS640465	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTIJ-10A-01D A43981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43981	SRX609158	"Specific Capture analysis of normal sample TARGET-30-PASTIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTIJ-10A-01D A43981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43981_1_lane_dupsFlagged.bam	SRR1423106	@dbgap@:reads/SRP012002/SRS640465/SRX609158/SRR1423106/SRR1423106.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTIJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTMW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTMW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTMW-09A-01D_TARGET-30-PASTMW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTMW-09A-01D_TARGET-30-PASTMW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTMW-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTMW-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-09A-01D	DNA	EFO	SRS640508	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-09A-01D A43980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43980	SRX609201	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASTMW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-09A-01D A43980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43980_1_lane_dupsFlagged.bam	SRR1423059	@dbgap@:reads/SRP012002/SRS640508/SRX609201/SRR1423059/SRR1423059.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTMW-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTMW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTMW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTMW-09A-01D_TARGET-30-PASTMW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTMW-09A-01D_TARGET-30-PASTMW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTMW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTMW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTMW-10A-01D	DNA	EFO	SRS640549	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTMW-10A-01D A43972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43972	SRX609242	"Specific Capture analysis of normal sample TARGET-30-PASTMW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTMW-10A-01D A43972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43972_1_lane_dupsFlagged.bam	SRR1423072	@dbgap@:reads/SRP012002/SRS640549/SRX609242/SRR1423072/SRR1423072.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTMW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTNT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTNT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTNT-01A-01D_TARGET-30-PASTNT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTNT-01A-01D_TARGET-30-PASTNT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTNT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTNT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-01A-01D	DNA	EFO	SRS640505	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-01A-01D A43990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43990	SRX609198	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASTNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-01A-01D A43990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43990_1_lane_dupsFlagged.bam	SRR1423142	@dbgap@:reads/SRP012002/SRS640505/SRX609198/SRR1423142/SRR1423142.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTNT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTNT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTNT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTNT-01A-01D_TARGET-30-PASTNT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTNT-01A-01D_TARGET-30-PASTNT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTNT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTNT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTNT-10A-01D	DNA	EFO	SRS640479	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTNT-10A-01D A43982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43982	SRX609172	"Specific Capture analysis of normal sample TARGET-30-PASTNT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTNT-10A-01D A43982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43982_1_lane_dupsFlagged.bam	SRR1423130	@dbgap@:reads/SRP012002/SRS640479/SRX609172/SRR1423130/SRR1423130.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTNT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTSI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTSI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSI-01A-01D_TARGET-30-PASTSI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSI-01A-01D_TARGET-30-PASTSI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTSI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-01A-01D	DNA	EFO	SRS640545	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-01A-01D A43991 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43991	SRX609228	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-01A-01D A43991 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43991_1_lane_dupsFlagged.bam	SRR1423051	@dbgap@:reads/SRP012002/SRS640545/SRX609228/SRR1423051/SRR1423051.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTSI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTSI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSI-01A-01D_TARGET-30-PASTSI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSI-01A-01D_TARGET-30-PASTSI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTSI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSI-10A-01D	DNA	EFO	SRS640474	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSI-10A-01D A43983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43983	SRX609167	"Specific Capture analysis of normal sample TARGET-30-PASTSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSI-10A-01D A43983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43983_1_lane_dupsFlagged.bam	SRR1423090	@dbgap@:reads/SRP012002/SRS640474/SRX609167/SRR1423090/SRR1423090.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTSY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTSY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSY-01A-01D_TARGET-30-PASTSY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSY-01A-01D_TARGET-30-PASTSY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTSY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-01A-01D	DNA	EFO	SRS640546	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-01A-01D A43993 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43993	SRX609239	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-01A-01D A43993 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43993_1_lane_dupsFlagged.bam	SRR1423058	@dbgap@:reads/SRP012002/SRS640546/SRX609239/SRR1423058/SRR1423058.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTSY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTSY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSY-01A-01D_TARGET-30-PASTSY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTSY-01A-01D_TARGET-30-PASTSY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTSY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTSY-10A-01D	DNA	EFO	SRS640485	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTSY-10A-01D A43985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43985	SRX609178	"Specific Capture analysis of normal sample TARGET-30-PASTSY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTSY-10A-01D A43985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43985_1_lane_dupsFlagged.bam	SRR1423086	@dbgap@:reads/SRP012002/SRS640485/SRX609178/SRR1423086/SRR1423086.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTSY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTTX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTTX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTTX-01A-01D_TARGET-30-PASTTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTTX-01A-01D_TARGET-30-PASTTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTTX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTTX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-01A-01D	DNA	EFO	SRS640486	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-01A-01D A43992 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43992	SRX609179	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-01A-01D A43992 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43992_1_lane_dupsFlagged.bam	SRR1423155	@dbgap@:reads/SRP012002/SRS640486/SRX609179/SRR1423155/SRR1423155.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTTX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTTX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTTX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTTX-01A-01D_TARGET-30-PASTTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTTX-01A-01D_TARGET-30-PASTTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTTX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTTX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTTX-10A-01D	DNA	EFO	SRS640477	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTTX-10A-01D A43984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43984	SRX609170	"Specific Capture analysis of normal sample TARGET-30-PASTTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTTX-10A-01D A43984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43984_1_lane_dupsFlagged.bam	SRR1423108	@dbgap@:reads/SRP012002/SRS640477/SRX609170/SRR1423108/SRR1423108.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTTX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTWY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTWY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTWY-01A-01D_TARGET-30-PASTWY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTWY-01A-01D_TARGET-30-PASTWY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTWY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTWY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-01A-01D	DNA	EFO	SRS640547	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-01A-01D A43994 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43994	SRX609240	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTWY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-01A-01D A43994 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43994_1_lane_dupsFlagged.bam	SRR1423131	@dbgap@:reads/SRP012002/SRS640547/SRX609240/SRR1423131/SRR1423131.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTWY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTWY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTWY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTWY-01A-01D_TARGET-30-PASTWY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTWY-01A-01D_TARGET-30-PASTWY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTWY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTWY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTWY-10A-01D	DNA	EFO	SRS640534	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTWY-10A-01D A43986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43986	SRX609226	"Specific Capture analysis of normal sample TARGET-30-PASTWY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTWY-10A-01D A43986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43986_1_lane_dupsFlagged.bam	SRR1423083	@dbgap@:reads/SRP012002/SRS640534/SRX609226/SRR1423083/SRR1423083.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTWY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTXV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTXV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTXV-01A-01D_TARGET-30-PASTXV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTXV-01A-01D_TARGET-30-PASTXV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTXV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTXV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-01A-01D	DNA	EFO	SRS640527	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-01A-01D A43995 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43995	SRX609220	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASTXV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-01A-01D A43995 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43995_1_lane_dupsFlagged.bam	SRR1423069	@dbgap@:reads/SRP012002/SRS640527/SRX609220/SRR1423069/SRR1423069.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTXV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASTXV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASTXV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTXV-01A-01D_TARGET-30-PASTXV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASTXV-01A-01D_TARGET-30-PASTXV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASTXV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTXV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASTXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASTXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASTXV-10A-01D	DNA	EFO	SRS640540	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASTXV-10A-01D A43987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43987	SRX609234	"Specific Capture analysis of normal sample TARGET-30-PASTXV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASTXV-10A-01D A43987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43987_1_lane_dupsFlagged.bam	SRR1423126	@dbgap@:reads/SRP012002/SRS640540/SRX609234/SRR1423126/SRR1423126.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASTXV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUCU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUCU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUCU-01A-01D_TARGET-30-PASUCU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUCU-01A-01D_TARGET-30-PASUCU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUCU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUCU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-01A-01D	DNA	EFO	SRS640490	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-01A-01D A43996 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43996	SRX609183	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUCU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-01A-01D A43996 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43996_1_lane_dupsFlagged.bam	SRR1423134	@dbgap@:reads/SRP012002/SRS640490/SRX609183/SRR1423134/SRR1423134.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUCU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUCU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUCU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUCU-01A-01D_TARGET-30-PASUCU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUCU-01A-01D_TARGET-30-PASUCU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUCU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUCU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUCU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUCU-10A-01D	DNA	EFO	SRS640493	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUCU-10A-01D A43988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43988	SRX609187	"Specific Capture analysis of normal sample TARGET-30-PASUCU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUCU-10A-01D A43988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43988_1_lane_dupsFlagged.bam	SRR1423138	@dbgap@:reads/SRP012002/SRS640493/SRX609187/SRR1423138/SRR1423138.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUCU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUEA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUEA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEA-01A-01D_TARGET-30-PASUEA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEA-01A-01D_TARGET-30-PASUEA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUEA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-01A-01D	DNA	EFO	SRS640542	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-01A-01D A44005 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44005	SRX609236	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-01A-01D A44005 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44005_1_lane_dupsFlagged.bam	SRR1423100	@dbgap@:reads/SRP012002/SRS640542/SRX609236/SRR1423100/SRR1423100.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUEA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUEA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEA-01A-01D_TARGET-30-PASUEA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEA-01A-01D_TARGET-30-PASUEA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUEA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEA-10A-01D	DNA	EFO	SRS640472	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEA-10A-01D A43997 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43997	SRX609165	"Specific Capture analysis of normal sample TARGET-30-PASUEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEA-10A-01D A43997 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43997_1_lane_dupsFlagged.bam	SRR1423112	@dbgap@:reads/SRP012002/SRS640472/SRX609165/SRR1423112/SRR1423112.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUEZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUEZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEZ-01A-01D_TARGET-30-PASUEZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEZ-01A-01D_TARGET-30-PASUEZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUEZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-01A-01D	DNA	EFO	SRS640559	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-01A-01D A44006 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44006	SRX609251	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUEZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-01A-01D A44006 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44006_1_lane_dupsFlagged.bam	SRR1423071	@dbgap@:reads/SRP012002/SRS640559/SRX609251/SRR1423071/SRR1423071.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUEZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUEZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEZ-01A-01D_TARGET-30-PASUEZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUEZ-01A-01D_TARGET-30-PASUEZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUEZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUEZ-10A-01D	DNA	EFO	SRS640563	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUEZ-10A-01D A43998 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43998	SRX609256	"Specific Capture analysis of normal sample TARGET-30-PASUEZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUEZ-10A-01D A43998 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43998_1_lane_dupsFlagged.bam	SRR1423135	@dbgap@:reads/SRP012002/SRS640563/SRX609256/SRR1423135/SRR1423135.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUEZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUFL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUFL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUFL-01A-01D_TARGET-30-PASUFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUFL-01A-01D_TARGET-30-PASUFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUFL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUFL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-01A-01D	DNA	EFO	SRS640453	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-01A-01D A44009 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44009	SRX609146	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-01A-01D A44009 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44009_1_lane_dupsFlagged.bam	SRR1422985	@dbgap@:reads/SRP012002/SRS640453/SRX609146/SRR1422985/SRR1422985.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUFL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUFL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUFL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUFL-01A-01D_TARGET-30-PASUFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUFL-01A-01D_TARGET-30-PASUFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUFL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUFL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUFL-10A-01D	DNA	EFO	SRS640473	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUFL-10A-01D A44001 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44001	SRX609166	"Specific Capture analysis of normal sample TARGET-30-PASUFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUFL-10A-01D A44001 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44001_1_lane_dupsFlagged.bam	SRR1423124	@dbgap@:reads/SRP012002/SRS640473/SRX609166/SRR1423124/SRR1423124.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUFL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUMG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUMG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUMG-01A-01D_TARGET-30-PASUMG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUMG-01A-01D_TARGET-30-PASUMG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUMG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUMG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-01A-01D	DNA	EFO	SRS640560	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-01A-01D A44007 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44007	SRX609253	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-01A-01D A44007 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44007_1_lane_dupsFlagged.bam	SRR1423087	@dbgap@:reads/SRP012002/SRS640560/SRX609253/SRR1423087/SRR1423087.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUMG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUMG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUMG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUMG-01A-01D_TARGET-30-PASUMG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUMG-01A-01D_TARGET-30-PASUMG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUMG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUMG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUMG-10A-01D	DNA	EFO	SRS640504	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUMG-10A-01D A43999 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A43999	SRX609197	"Specific Capture analysis of normal sample TARGET-30-PASUMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUMG-10A-01D A43999 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A43999_1_lane_dupsFlagged.bam	SRR1423111	@dbgap@:reads/SRP012002/SRS640504/SRX609197/SRR1423111/SRR1423111.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUMG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUTC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUTC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUTC-01A-01D_TARGET-30-PASUTC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUTC-01A-01D_TARGET-30-PASUTC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUTC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUTC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-01A-01D	DNA	EFO	SRS640446	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-01A-01D A44008 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44008	SRX609139	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-01A-01D A44008 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44008_1_lane_dupsFlagged.bam	SRR1423016	@dbgap@:reads/SRP012002/SRS640446/SRX609139/SRR1423016/SRR1423016.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUTC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUTC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUTC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUTC-01A-01D_TARGET-30-PASUTC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUTC-01A-01D_TARGET-30-PASUTC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUTC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUTC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUTC-10A-01D	DNA	EFO	SRS640548	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUTC-10A-01D A44000 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44000	SRX609241	"Specific Capture analysis of normal sample TARGET-30-PASUTC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUTC-10A-01D A44000 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44000_1_lane_dupsFlagged.bam	SRR1423144	@dbgap@:reads/SRP012002/SRS640548/SRX609241/SRR1423144/SRR1423144.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUTC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUXH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUXH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUXH-01A-01D_TARGET-30-PASUXH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUXH-01A-01D_TARGET-30-PASUXH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUXH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUXH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-01A-01D	DNA	EFO	SRS640362	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-01A-01D A44010 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44010	SRX609054	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASUXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-01A-01D A44010 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44010_1_lane_dupsFlagged.bam	SRR1423049	@dbgap@:reads/SRP012002/SRS640362/SRX609054/SRR1423049/SRR1423049.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUXH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUXH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUXH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUXH-01A-01D_TARGET-30-PASUXH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUXH-01A-01D_TARGET-30-PASUXH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUXH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUXH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUXH-10A-01D	DNA	EFO	SRS640470	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUXH-10A-01D A44002 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44002	SRX609163	"Specific Capture analysis of normal sample TARGET-30-PASUXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUXH-10A-01D A44002 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44002_1_lane_dupsFlagged.bam	SRR1423060	@dbgap@:reads/SRP012002/SRS640470/SRX609163/SRR1423060/SRR1423060.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUXH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUYL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUYL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUYL-01A-01D_TARGET-30-PASUYL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUYL-01A-01D_TARGET-30-PASUYL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUYL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUYL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-01A-01D	DNA	EFO	SRS640356	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-01A-01D A44011 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44011	SRX609050	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASUYL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-01A-01D A44011 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44011_1_lane_dupsFlagged.bam	SRR1422972	@dbgap@:reads/SRP012002/SRS640356/SRX609050/SRR1422972/SRR1422972.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUYL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASUYL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASUYL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUYL-01A-01D_TARGET-30-PASUYL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASUYL-01A-01D_TARGET-30-PASUYL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASUYL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUYL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASUYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASUYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASUYL-10A-01D	DNA	EFO	SRS640484	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASUYL-10A-01D A44003 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44003	SRX609177	"Specific Capture analysis of normal sample TARGET-30-PASUYL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASUYL-10A-01D A44003 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44003_1_lane_dupsFlagged.bam	SRR1423139	@dbgap@:reads/SRP012002/SRS640484/SRX609177/SRR1423139/SRR1423139.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASUYL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVKE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVKE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKE-01A-01D_TARGET-30-PASVKE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKE-01A-01D_TARGET-30-PASVKE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVKE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-01A-01D	DNA	EFO	SRS640395	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-01A-01D A44012 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44012	SRX609088	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-01A-01D A44012 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44012_1_lane_dupsFlagged.bam	SRR1422992	@dbgap@:reads/SRP012002/SRS640395/SRX609088/SRR1422992/SRR1422992.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVKE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVKE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKE-01A-01D_TARGET-30-PASVKE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKE-01A-01D_TARGET-30-PASVKE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVKE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKE-10A-01D	DNA	EFO	SRS640556	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKE-10A-01D A44004 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44004	SRX609249	"Specific Capture analysis of normal sample TARGET-30-PASVKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKE-10A-01D A44004 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44004_1_lane_dupsFlagged.bam	SRR1423096	@dbgap@:reads/SRP012002/SRS640556/SRX609249/SRR1423096/SRR1423096.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVKL-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVKL-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKL-09A-01D_TARGET-30-PASVKL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKL-09A-01D_TARGET-30-PASVKL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVKL-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKL-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-09A-01D	DNA	EFO	SRS640400	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-09A-01D A44021 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44021	SRX609093	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVKL-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-09A-01D A44021 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44021_1_lane_dupsFlagged.bam	SRR1423040	@dbgap@:reads/SRP012002/SRS640400/SRX609093/SRR1423040/SRR1423040.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKL-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVKL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVKL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKL-09A-01D_TARGET-30-PASVKL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVKL-09A-01D_TARGET-30-PASVKL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVKL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVKL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVKL-10A-01D	DNA	EFO	SRS640392	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVKL-10A-01D A44013 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44013	SRX609085	"Specific Capture analysis of normal sample TARGET-30-PASVKL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVKL-10A-01D A44013 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44013_1_lane_dupsFlagged.bam	SRR1423005	@dbgap@:reads/SRP012002/SRS640392/SRX609085/SRR1423005/SRR1423005.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVKL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVSU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVSU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVSU-09A-01D_TARGET-30-PASVSU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVSU-09A-01D_TARGET-30-PASVSU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVSU-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVSU-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-09A-01D	DNA	EFO	SRS640391	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-09A-01D A44022 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44022	SRX609084	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVSU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-09A-01D A44022 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44022_1_lane_dupsFlagged.bam	SRR1422995	@dbgap@:reads/SRP012002/SRS640391/SRX609084/SRR1422995/SRR1422995.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVSU-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVSU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVSU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVSU-09A-01D_TARGET-30-PASVSU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVSU-09A-01D_TARGET-30-PASVSU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVSU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVSU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVSU-10A-01D	DNA	EFO	SRS640417	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVSU-10A-01D A44014 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44014	SRX609110	"Specific Capture analysis of normal sample TARGET-30-PASVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVSU-10A-01D A44014 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44014_1_lane_dupsFlagged.bam	SRR1422966	@dbgap@:reads/SRP012002/SRS640417/SRX609110/SRR1422966/SRR1422966.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVSU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVWG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVWG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVWG-01A-01D_TARGET-30-PASVWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVWG-01A-01D_TARGET-30-PASVWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVWG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVWG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-01A-01D	DNA	EFO	SRS640451	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-01A-01D A44023 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44023	SRX609144	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASVWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-01A-01D A44023 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44023_1_lane_dupsFlagged.bam	SRR1422967	@dbgap@:reads/SRP012002/SRS640451/SRX609144/SRR1422967/SRR1422967.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVWG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVWG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVWG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVWG-01A-01D_TARGET-30-PASVWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVWG-01A-01D_TARGET-30-PASVWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVWG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVWG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVWG-10A-01D	DNA	EFO	SRS640454	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVWG-10A-01D A44015 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44015	SRX609147	"Specific Capture analysis of normal sample TARGET-30-PASVWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVWG-10A-01D A44015 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44015_1_lane_dupsFlagged.bam	SRR1423013	@dbgap@:reads/SRP012002/SRS640454/SRX609147/SRR1423013/SRR1423013.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVWG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVYV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVYV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVYV-01A-01D_TARGET-30-PASVYV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVYV-01A-01D_TARGET-30-PASVYV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVYV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVYV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-01A-01D	DNA	EFO	SRS640399	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-01A-01D A44024 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44024	SRX609092	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASVYV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-01A-01D A44024 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44024_1_lane_dupsFlagged.bam	SRR1422960	@dbgap@:reads/SRP012002/SRS640399/SRX609092/SRR1422960/SRR1422960.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVYV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASVYV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASVYV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVYV-01A-01D_TARGET-30-PASVYV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASVYV-01A-01D_TARGET-30-PASVYV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASVYV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVYV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASVYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASVYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASVYV-10A-01D	DNA	EFO	SRS640422	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASVYV-10A-01D A44016 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44016	SRX609115	"Specific Capture analysis of normal sample TARGET-30-PASVYV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASVYV-10A-01D A44016 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44016_1_lane_dupsFlagged.bam	SRR1422964	@dbgap@:reads/SRP012002/SRS640422/SRX609115/SRR1422964/SRR1422964.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASVYV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWCY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWCY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWCY-01A-01D_TARGET-30-PASWCY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWCY-01A-01D_TARGET-30-PASWCY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWCY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWCY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-01A-01D	DNA	EFO	SRS640450	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-01A-01D A44025 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44025	SRX609143	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWCY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-01A-01D A44025 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44025_1_lane_dupsFlagged.bam	SRR1422984	@dbgap@:reads/SRP012002/SRS640450/SRX609143/SRR1422984/SRR1422984.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWCY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWCY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWCY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWCY-01A-01D_TARGET-30-PASWCY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWCY-01A-01D_TARGET-30-PASWCY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWCY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWCY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWCY-10A-01D	DNA	EFO	SRS640403	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWCY-10A-01D A44017 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44017	SRX609096	"Specific Capture analysis of normal sample TARGET-30-PASWCY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWCY-10A-01D A44017 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44017_1_lane_dupsFlagged.bam	SRR1423003	@dbgap@:reads/SRP012002/SRS640403/SRX609096/SRR1423003/SRR1423003.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWCY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWKI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWKI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWKI-01A-01D_TARGET-30-PASWKI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWKI-01A-01D_TARGET-30-PASWKI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWKI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWKI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-01A-01D	DNA	EFO	SRS653959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-01A-01D A44482 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44482	SRX645905	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-01A-01D A44482 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44482_1_lane_dupsFlagged.bam	SRR1506669	@dbgap@:reads/SRP012002/SRS653959/SRX645905/SRR1506669/SRR1506669.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWKI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWKI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWKI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWKI-01A-01D_TARGET-30-PASWKI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWKI-01A-01D_TARGET-30-PASWKI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWKI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWKI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWKI-10A-01D	DNA	EFO	SRS653992	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWKI-10A-01D A44474 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44474	SRX645938	"Specific Capture analysis of normal sample TARGET-30-PASWKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASWKI-10A-01D A44474 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44474_1_lane_dupsFlagged.bam	SRR1506658	@dbgap@:reads/SRP012002/SRS653992/SRX645938/SRR1506658/SRR1506658.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWKI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWNG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWNG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWNG-01A-01D_TARGET-30-PASWNG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWNG-01A-01D_TARGET-30-PASWNG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWNG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWNG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-01A-01D	DNA	EFO	SRS640352	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-01A-01D A44026 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44026	SRX609045	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-01A-01D A44026 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44026_1_lane_dupsFlagged.bam	SRR1423034	@dbgap@:reads/SRP012002/SRS640352/SRX609045/SRR1423034/SRR1423034.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWNG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWNG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWNG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWNG-01A-01D_TARGET-30-PASWNG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWNG-01A-01D_TARGET-30-PASWNG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWNG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWNG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWNG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWNG-10A-01D	DNA	EFO	SRS640438	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWNG-10A-01D A44018 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44018	SRX609131	"Specific Capture analysis of normal sample TARGET-30-PASWNG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWNG-10A-01D A44018 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44018_1_lane_dupsFlagged.bam	SRR1422961	@dbgap@:reads/SRP012002/SRS640438/SRX609131/SRR1422961/SRR1422961.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWNG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWSZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWSZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWSZ-01A-01D_TARGET-30-PASWSZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWSZ-01A-01D_TARGET-30-PASWSZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWSZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWSZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-01A-01D	DNA	EFO	SRS640375	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-01A-01D A44027 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44027	SRX609068	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-01A-01D A44027 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44027_1_lane_dupsFlagged.bam	SRR1423000	@dbgap@:reads/SRP012002/SRS640375/SRX609068/SRR1423000/SRR1423000.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWSZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-10A-01D	DNA	EFO	SRS640452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-10A-01D A44019 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44019	SRX609145	"Specific Capture analysis of normal sample TARGET-30-PASWSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-10A-01D A44019 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44019_1_lane_dupsFlagged.bam	SRR1422957	@dbgap@:reads/SRP012002/SRS640452/SRX609145/SRR1422957/SRR1422957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWSZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWSZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-10A-01D	DNA	EFO	SRS640452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-10A-01D A44019 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44019	SRX609145	"Specific Capture analysis of normal sample TARGET-30-PASWSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-10A-01D A44019 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44019_1_lane_dupsFlagged.bam	SRR1422957	@dbgap@:reads/SRP012002/SRS640452/SRX609145/SRR1422957/SRR1422957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWSZ-01A-01D_TARGET-30-PASWSZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-10A-01D	DNA	EFO	SRS640452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-10A-01D A44019 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44019	SRX609145	"Specific Capture analysis of normal sample TARGET-30-PASWSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-10A-01D A44019 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44019_1_lane_dupsFlagged.bam	SRR1422957	@dbgap@:reads/SRP012002/SRS640452/SRX609145/SRR1422957/SRR1422957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWSZ-01A-01D_TARGET-30-PASWSZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWSZ-10A-01D	DNA	EFO	SRS640452	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWSZ-10A-01D A44019 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44019	SRX609145	"Specific Capture analysis of normal sample TARGET-30-PASWSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWSZ-10A-01D A44019 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44019_1_lane_dupsFlagged.bam	SRR1422957	@dbgap@:reads/SRP012002/SRS640452/SRX609145/SRR1422957/SRR1422957.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWSZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWVD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWVD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVD-01A-01D_TARGET-30-PASWVD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVD-01A-01D_TARGET-30-PASWVD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWVD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-01A-01D	DNA	EFO	SRS640424	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-01A-01D A44038 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44038	SRX609116	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASWVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-01A-01D A44038 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44038_1_lane_dupsFlagged.bam	SRR1422976	@dbgap@:reads/SRP012002/SRS640424/SRX609116/SRR1422976/SRR1422976.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWVD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWVD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVD-01A-01D_TARGET-30-PASWVD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVD-01A-01D_TARGET-30-PASWVD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWVD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVD-10A-01D	DNA	EFO	SRS640412	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVD-10A-01D A44030 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44030	SRX609104	"Specific Capture analysis of normal sample TARGET-30-PASWVD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVD-10A-01D A44030 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44030_1_lane_dupsFlagged.bam	SRR1423039	@dbgap@:reads/SRP012002/SRS640412/SRX609104/SRR1423039/SRR1423039.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWVE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWVE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVE-01A-01D_TARGET-30-PASWVE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVE-01A-01D_TARGET-30-PASWVE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWVE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-01A-01D	DNA	EFO	SRS640372	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-01A-01D A44028 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44028	SRX609065	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-01A-01D A44028 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44028_1_lane_dupsFlagged.bam	SRR1422981	@dbgap@:reads/SRP012002/SRS640372/SRX609065/SRR1422981/SRR1422981.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWVE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWVE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVE-01A-01D_TARGET-30-PASWVE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWVE-01A-01D_TARGET-30-PASWVE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWVE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWVE-10A-01D	DNA	EFO	SRS640360	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWVE-10A-01D A44020 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44020	SRX609053	"Specific Capture analysis of normal sample TARGET-30-PASWVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWVE-10A-01D A44020 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44020_1_lane_dupsFlagged.bam	SRR1422987	@dbgap@:reads/SRP012002/SRS640360/SRX609053/SRR1422987/SRR1422987.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWVE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWXG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWXG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWXG-01A-01D_TARGET-30-PASWXG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWXG-01A-01D_TARGET-30-PASWXG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWXG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWXG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-01A-01D	DNA	EFO	SRS640388	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-01A-01D A44037 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44037	SRX609080	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASWXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-01A-01D A44037 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44037_1_lane_dupsFlagged.bam	SRR1422979	@dbgap@:reads/SRP012002/SRS640388/SRX609080/SRR1422979/SRR1422979.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWXG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASWXG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASWXG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWXG-01A-01D_TARGET-30-PASWXG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASWXG-01A-01D_TARGET-30-PASWXG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASWXG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWXG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASWXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASWXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASWXG-10A-01D	DNA	EFO	SRS640409	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASWXG-10A-01D A44029 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44029	SRX609102	"Specific Capture analysis of normal sample TARGET-30-PASWXG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASWXG-10A-01D A44029 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44029_1_lane_dupsFlagged.bam	SRR1422958	@dbgap@:reads/SRP012002/SRS640409/SRX609102/SRR1422958/SRR1422958.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASWXG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASXCG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASXCG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXCG-01A-01D_TARGET-30-PASXCG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXCG-01A-01D_TARGET-30-PASXCG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASXCG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXCG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-01A-01D	DNA	EFO	SRS640981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-01A-01D A44501 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44501	SRX609674	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASXCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-01A-01D A44501 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44501_1_lane_dupsFlagged.bam	SRR1423473	@dbgap@:reads/SRP012002/SRS640981/SRX609674/SRR1423473/SRR1423473.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXCG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASXCG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASXCG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXCG-01A-01D_TARGET-30-PASXCG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXCG-01A-01D_TARGET-30-PASXCG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASXCG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXCG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASXCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXCG-10A-01D	DNA	EFO	SRS640964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXCG-10A-01D A44493 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44493	SRX609657	"Specific Capture analysis of normal sample TARGET-30-PASXCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASXCG-10A-01D A44493 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44493_1_lane_dupsFlagged.bam	SRR1423502	@dbgap@:reads/SRP012002/SRS640964/SRX609657/SRR1423502/SRR1423502.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXCG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASXMI-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASXMI-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXMI-09A-01D_TARGET-30-PASXMI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXMI-09A-01D_TARGET-30-PASXMI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASXMI-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXMI-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-09A-01D	DNA	EFO	SRS640365	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-09A-01D A44039 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44039	SRX609058	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PASXMI-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-09A-01D A44039 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44039_1_lane_dupsFlagged.bam	SRR1423011	@dbgap@:reads/SRP012002/SRS640365/SRX609058/SRR1423011/SRR1423011.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXMI-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASXMI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASXMI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXMI-09A-01D_TARGET-30-PASXMI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASXMI-09A-01D_TARGET-30-PASXMI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASXMI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXMI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASXMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASXMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASXMI-10A-01D	DNA	EFO	SRS640455	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASXMI-10A-01D A44031 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44031	SRX609148	"Specific Capture analysis of normal sample TARGET-30-PASXMI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASXMI-10A-01D A44031 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44031_1_lane_dupsFlagged.bam	SRR1422988	@dbgap@:reads/SRP012002/SRS640455/SRX609148/SRR1422988/SRR1422988.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASXMI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYIP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYIP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYIP-01A-01D_TARGET-30-PASYIP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYIP-01A-01D_TARGET-30-PASYIP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYIP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYIP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-01A-01D	DNA	EFO	SRS640435	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-01A-01D A44041 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44041	SRX609128	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-01A-01D A44041 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44041_1_lane_dupsFlagged.bam	SRR1422948	@dbgap@:reads/SRP012002/SRS640435/SRX609128/SRR1422948/SRR1422948.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYIP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYIP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYIP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYIP-01A-01D_TARGET-30-PASYIP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYIP-01A-01D_TARGET-30-PASYIP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYIP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYIP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYIP-10A-01D	DNA	EFO	SRS640408	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYIP-10A-01D A44033 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44033	SRX609101	"Specific Capture analysis of normal sample TARGET-30-PASYIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYIP-10A-01D A44033 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44033_1_lane_dupsFlagged.bam	SRR1422947	@dbgap@:reads/SRP012002/SRS640408/SRX609101/SRR1422947/SRR1422947.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYIP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYJF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYJF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYJF-01A-01D_TARGET-30-PASYJF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYJF-01A-01D_TARGET-30-PASYJF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYJF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYJF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-01A-01D	DNA	EFO	SRS640355	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-01A-01D A44040 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44040	SRX609048	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PASYJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-01A-01D A44040 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44040_1_lane_dupsFlagged.bam	SRR1423017	@dbgap@:reads/SRP012002/SRS640355/SRX609048/SRR1423017/SRR1423017.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYJF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYJF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYJF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYJF-01A-01D_TARGET-30-PASYJF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYJF-01A-01D_TARGET-30-PASYJF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYJF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYJF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYJF-10A-01D	DNA	EFO	SRS640419	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYJF-10A-01D A44032 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44032	SRX609112	"Specific Capture analysis of normal sample TARGET-30-PASYJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYJF-10A-01D A44032 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44032_1_lane_dupsFlagged.bam	SRR1423004	@dbgap@:reads/SRP012002/SRS640419/SRX609112/SRR1423004/SRR1423004.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYJF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYTP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYTP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYTP-01A-01D_TARGET-30-PASYTP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYTP-01A-01D_TARGET-30-PASYTP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYTP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYTP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-01A-01D	DNA	EFO	SRS640432	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-01A-01D A44042 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44042	SRX609125	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-01A-01D A44042 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44042_1_lane_dupsFlagged.bam	SRR1422962	@dbgap@:reads/SRP012002/SRS640432/SRX609125/SRR1422962/SRR1422962.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYTP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYTP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYTP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYTP-01A-01D_TARGET-30-PASYTP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYTP-01A-01D_TARGET-30-PASYTP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYTP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYTP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYTP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYTP-10A-01D	DNA	EFO	SRS640371	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYTP-10A-01D A44034 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44034	SRX609064	"Specific Capture analysis of normal sample TARGET-30-PASYTP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYTP-10A-01D A44034 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44034_1_lane_dupsFlagged.bam	SRR1423047	@dbgap@:reads/SRP012002/SRS640371/SRX609064/SRR1423047/SRR1423047.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYTP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYYM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYYM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYM-01A-01D_TARGET-30-PASYYM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYM-01A-01D_TARGET-30-PASYYM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYYM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-01A-01D	DNA	EFO	SRS640425	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-01A-01D A44044 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44044	SRX609118	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASYYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-01A-01D A44044 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44044_1_lane_dupsFlagged.bam	SRR1423036	@dbgap@:reads/SRP012002/SRS640425/SRX609118/SRR1423036/SRR1423036.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYYM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYYM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYM-01A-01D_TARGET-30-PASYYM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYM-01A-01D_TARGET-30-PASYYM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYYM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYM-10A-01D	DNA	EFO	SRS640363	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYM-10A-01D A44036 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44036	SRX609056	"Specific Capture analysis of normal sample TARGET-30-PASYYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASYYM-10A-01D A44036 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44036_1_lane_dupsFlagged.bam	SRR1422949	@dbgap@:reads/SRP012002/SRS640363/SRX609056/SRR1422949/SRR1422949.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYYX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYYX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYX-01A-01D_TARGET-30-PASYYX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYX-01A-01D_TARGET-30-PASYYX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYYX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-01A-01D	DNA	EFO	SRS641037	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-01A-01D A44943 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44943	SRX609955	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASYYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-01A-01D A44943 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44943_1_lane_dupsFlagged.bam	SRR1424219	@dbgap@:reads/SRP012002/SRS641037/SRX609955/SRR1424219/SRR1424219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASYYX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASYYX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYX-01A-01D_TARGET-30-PASYYX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASYYX-01A-01D_TARGET-30-PASYYX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASYYX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASYYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASYYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASYYX-10A-01D	DNA	EFO	SRS641027	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASYYX-10A-01D A44935 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44935	SRX609945	"Specific Capture analysis of normal sample TARGET-30-PASYYX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PASYYX-10A-01D A44935 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44935_1_lane_dupsFlagged.bam	SRR1424231	@dbgap@:reads/SRP012002/SRS641027/SRX609945/SRR1424231/SRR1424231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASYYX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZFX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZFX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZFX-01A-01D_TARGET-30-PASZFX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZFX-01A-01D_TARGET-30-PASZFX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZFX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZFX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-01A-01D	DNA	EFO	SRS640404	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-01A-01D A44052 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44052	SRX609097	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PASZFX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-01A-01D A44052 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44052_1_lane_dupsFlagged.bam	SRR1423001	@dbgap@:reads/SRP012002/SRS640404/SRX609097/SRR1423001/SRR1423001.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZFX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZFX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZFX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZFX-01A-01D_TARGET-30-PASZFX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZFX-01A-01D_TARGET-30-PASZFX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZFX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZFX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZFX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZFX-10A-01D	DNA	EFO	SRS640415	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZFX-10A-01D A44046 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44046	SRX609109	"Specific Capture analysis of normal sample TARGET-30-PASZFX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZFX-10A-01D A44046 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44046_1_lane_dupsFlagged.bam	SRR1423023	@dbgap@:reads/SRP012002/SRS640415/SRX609109/SRR1423023/SRR1423023.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZFX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZGB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZGB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZGB-01A-01D_TARGET-30-PASZGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZGB-01A-01D_TARGET-30-PASZGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZGB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZGB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-01A-01D	DNA	EFO	SRS640430	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-01A-01D A44051 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44051	SRX609123	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-01A-01D A44051 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44051_1_lane_dupsFlagged.bam	SRR1423030	@dbgap@:reads/SRP012002/SRS640430/SRX609123/SRR1423030/SRR1423030.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZGB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZGB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZGB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZGB-01A-01D_TARGET-30-PASZGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZGB-01A-01D_TARGET-30-PASZGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZGB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZGB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZGB-10A-01D	DNA	EFO	SRS640393	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZGB-10A-01D A44045 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44045	SRX609086	"Specific Capture analysis of normal sample TARGET-30-PASZGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZGB-10A-01D A44045 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44045_1_lane_dupsFlagged.bam	SRR1422969	@dbgap@:reads/SRP012002/SRS640393/SRX609086/SRR1422969/SRR1422969.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZGB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZJB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZJB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZJB-01A-01D_TARGET-30-PASZJB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZJB-01A-01D_TARGET-30-PASZJB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZJB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZJB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-01A-01D	DNA	EFO	SRS640380	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-01A-01D A44053 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44053	SRX609073	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-01A-01D A44053 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44053_1_lane_dupsFlagged.bam	SRR1422980	@dbgap@:reads/SRP012002/SRS640380/SRX609073/SRR1422980/SRR1422980.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZJB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZJB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZJB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZJB-01A-01D_TARGET-30-PASZJB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZJB-01A-01D_TARGET-30-PASZJB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZJB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZJB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZJB-10A-01D	DNA	EFO	SRS640367	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZJB-10A-01D A44047 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44047	SRX609060	"Specific Capture analysis of normal sample TARGET-30-PASZJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZJB-10A-01D A44047 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44047_1_lane_dupsFlagged.bam	SRR1422974	@dbgap@:reads/SRP012002/SRS640367/SRX609060/SRR1422974/SRR1422974.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZJB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZST-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZST-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZST-01A-01D_TARGET-30-PASZST-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZST-01A-01D_TARGET-30-PASZST-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZST-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZST-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-01A-01D	DNA	EFO	SRS640439	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-01A-01D A44054 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44054	SRX609132	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-01A-01D A44054 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44054_1_lane_dupsFlagged.bam	SRR1422993	@dbgap@:reads/SRP012002/SRS640439/SRX609132/SRR1422993/SRR1422993.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZST-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZST-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZST-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZST-01A-01D_TARGET-30-PASZST-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZST-01A-01D_TARGET-30-PASZST-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZST-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZST-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZST-10A-01D	DNA	EFO	SRS640441	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZST-10A-01D A44048 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44048	SRX609134	"Specific Capture analysis of normal sample TARGET-30-PASZST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZST-10A-01D A44048 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44048_1_lane_dupsFlagged.bam	SRR1422950	@dbgap@:reads/SRP012002/SRS640441/SRX609134/SRR1422950/SRR1422950.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZST-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZTV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZTV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZTV-01A-01D_TARGET-30-PASZTV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZTV-01A-01D_TARGET-30-PASZTV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZTV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZTV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-01A-01D	DNA	EFO	SRS653988	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-01A-01D A44483 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44483	SRX645934	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZTV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-01A-01D A44483 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44483_1_lane_dupsFlagged.bam	SRR1506646	@dbgap@:reads/SRP012002/SRS653988/SRX645934/SRR1506646/SRR1506646.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZTV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZTV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZTV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZTV-01A-01D_TARGET-30-PASZTV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZTV-01A-01D_TARGET-30-PASZTV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZTV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZTV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZTV-10A-01D	DNA	EFO	SRS653966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZTV-10A-01D A44475 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44475	SRX645912	"Specific Capture analysis of normal sample TARGET-30-PASZTV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PASZTV-10A-01D A44475 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44475_1_lane_dupsFlagged.bam	SRR1506648	@dbgap@:reads/SRP012002/SRS653966/SRX645912/SRR1506648/SRR1506648.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZTV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZYY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZYY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZYY-01A-01D_TARGET-30-PASZYY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZYY-01A-01D_TARGET-30-PASZYY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZYY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZYY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-01A-01D	DNA	EFO	SRS640443	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-01A-01D A44055 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44055	SRX609136	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PASZYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-01A-01D A44055 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44055_1_lane_dupsFlagged.bam	SRR1422983	@dbgap@:reads/SRP012002/SRS640443/SRX609136/SRR1422983/SRR1422983.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZYY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PASZYY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PASZYY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZYY-01A-01D_TARGET-30-PASZYY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PASZYY-01A-01D_TARGET-30-PASZYY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PASZYY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZYY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PASZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PASZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PASZYY-10A-01D	DNA	EFO	SRS640398	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PASZYY-10A-01D A44049 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44049	SRX609091	"Specific Capture analysis of normal sample TARGET-30-PASZYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PASZYY-10A-01D A44049 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44049_1_lane_dupsFlagged.bam	SRR1422970	@dbgap@:reads/SRP012002/SRS640398/SRX609091/SRR1422970/SRR1422970.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PASZYY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAAV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAAV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAAV-01A-01D_TARGET-30-PATAAV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAAV-01A-01D_TARGET-30-PATAAV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAAV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAAV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-01A-01D	DNA	EFO	SRS640414	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-01A-01D A44056 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44056	SRX609107	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-01A-01D A44056 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44056_1_lane_dupsFlagged.bam	SRR1422963	@dbgap@:reads/SRP012002/SRS640414/SRX609107/SRR1422963/SRR1422963.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAAV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAAV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAAV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAAV-01A-01D_TARGET-30-PATAAV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAAV-01A-01D_TARGET-30-PATAAV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAAV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAAV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAAV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAAV-10A-01D	DNA	EFO	SRS640377	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAAV-10A-01D A44050 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44050	SRX609070	"Specific Capture analysis of normal sample TARGET-30-PATAAV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAAV-10A-01D A44050 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44050_1_lane_dupsFlagged.bam	SRR1423024	@dbgap@:reads/SRP012002/SRS640377/SRX609070/SRR1423024/SRR1423024.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAAV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATACA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATACA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATACA-01A-01D_TARGET-30-PATACA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATACA-01A-01D_TARGET-30-PATACA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATACA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATACA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-01A-01D	DNA	EFO	SRS641087	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-01A-01D A44963 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44963	SRX610005	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATACA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-01A-01D A44963 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44963_1_lane_dupsFlagged.bam	SRR1424253	@dbgap@:reads/SRP012002/SRS641087/SRX610005/SRR1424253/SRR1424253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATACA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATACA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATACA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATACA-01A-01D_TARGET-30-PATACA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATACA-01A-01D_TARGET-30-PATACA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATACA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATACA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATACA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATACA-10A-01D	DNA	EFO	SRS641051	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATACA-10A-01D A44955 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44955	SRX609967	"Specific Capture analysis of normal sample TARGET-30-PATACA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATACA-10A-01D A44955 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44955_1_lane_dupsFlagged.bam	SRR1424257	@dbgap@:reads/SRP012002/SRS641051/SRX609967/SRR1424257/SRR1424257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATACA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAFE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAFE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFE-01A-01D_TARGET-30-PATAFE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFE-01A-01D_TARGET-30-PATAFE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAFE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-01A-01D	DNA	EFO	SRS640442	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-01A-01D A44065 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44065	SRX609135	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-01A-01D A44065 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44065_1_lane_dupsFlagged.bam	SRR1423038	@dbgap@:reads/SRP012002/SRS640442/SRX609135/SRR1423038/SRR1423038.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAFE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAFE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFE-01A-01D_TARGET-30-PATAFE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFE-01A-01D_TARGET-30-PATAFE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAFE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFE-10A-01D	DNA	EFO	SRS640440	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFE-10A-01D A44057 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44057	SRX609133	"Specific Capture analysis of normal sample TARGET-30-PATAFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFE-10A-01D A44057 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44057_1_lane_dupsFlagged.bam	SRR1422994	@dbgap@:reads/SRP012002/SRS640440/SRX609133/SRR1422994/SRR1422994.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAFI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAFI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFI-01A-01D_TARGET-30-PATAFI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFI-01A-01D_TARGET-30-PATAFI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAFI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-01A-01D	DNA	EFO	SRS640431	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-01A-01D A44066 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44066	SRX609124	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-01A-01D A44066 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44066_1_lane_dupsFlagged.bam	SRR1423002	@dbgap@:reads/SRP012002/SRS640431/SRX609124/SRR1423002/SRR1423002.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAFI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAFI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFI-01A-01D_TARGET-30-PATAFI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAFI-01A-01D_TARGET-30-PATAFI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAFI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAFI-10A-01D	DNA	EFO	SRS640433	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAFI-10A-01D A44058 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44058	SRX609126	"Specific Capture analysis of normal sample TARGET-30-PATAFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAFI-10A-01D A44058 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44058_1_lane_dupsFlagged.bam	SRR1423033	@dbgap@:reads/SRP012002/SRS640433/SRX609126/SRR1423033/SRR1423033.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAFI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAKH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAKH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAKH-01A-01D_TARGET-30-PATAKH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAKH-01A-01D_TARGET-30-PATAKH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAKH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAKH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-01A-01D	DNA	EFO	SRS640436	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-01A-01D A44067 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44067	SRX609129	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATAKH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-01A-01D A44067 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44067_1_lane_dupsFlagged.bam	SRR1423020	@dbgap@:reads/SRP012002/SRS640436/SRX609129/SRR1423020/SRR1423020.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAKH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATAKH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATAKH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAKH-01A-01D_TARGET-30-PATAKH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATAKH-01A-01D_TARGET-30-PATAKH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATAKH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAKH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATAKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATAKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATAKH-10A-01D	DNA	EFO	SRS640447	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATAKH-10A-01D A44059 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44059	SRX609140	"Specific Capture analysis of normal sample TARGET-30-PATAKH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATAKH-10A-01D A44059 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44059_1_lane_dupsFlagged.bam	SRR1423018	@dbgap@:reads/SRP012002/SRS640447/SRX609140/SRR1423018/SRR1423018.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATAKH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBAC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBAC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBAC-01A-01D_TARGET-30-PATBAC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBAC-01A-01D_TARGET-30-PATBAC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBAC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBAC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-01A-01D	DNA	EFO	SRS641040	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-01A-01D A44944 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44944	SRX609959	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-01A-01D A44944 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44944_1_lane_dupsFlagged.bam	SRR1424209	@dbgap@:reads/SRP012002/SRS641040/SRX609959/SRR1424209/SRR1424209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBAC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBAC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBAC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBAC-01A-01D_TARGET-30-PATBAC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBAC-01A-01D_TARGET-30-PATBAC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBAC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBAC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBAC-10A-01D	DNA	EFO	SRS641099	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBAC-10A-01D A44936 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44936	SRX610017	"Specific Capture analysis of normal sample TARGET-30-PATBAC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATBAC-10A-01D A44936 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44936_1_lane_dupsFlagged.bam	SRR1424254	@dbgap@:reads/SRP012002/SRS641099/SRX610017/SRR1424254/SRR1424254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBAC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBHY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBHY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBHY-01A-01D_TARGET-30-PATBHY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBHY-01A-01D_TARGET-30-PATBHY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBHY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBHY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-01A-01D	DNA	EFO	SRS640383	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-01A-01D A44068 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44068	SRX609076	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBHY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-01A-01D A44068 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44068_1_lane_dupsFlagged.bam	SRR1422971	@dbgap@:reads/SRP012002/SRS640383/SRX609076/SRR1422971/SRR1422971.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBHY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBHY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBHY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBHY-01A-01D_TARGET-30-PATBHY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBHY-01A-01D_TARGET-30-PATBHY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBHY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBHY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBHY-10A-01D	DNA	EFO	SRS640379	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBHY-10A-01D A44060 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44060	SRX609071	"Specific Capture analysis of normal sample TARGET-30-PATBHY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATBHY-10A-01D A44060 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44060_1_lane_dupsFlagged.bam	SRR1422996	@dbgap@:reads/SRP012002/SRS640379/SRX609071/SRR1422996/SRR1422996.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBHY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBJI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBJI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBJI-01A-01D_TARGET-30-PATBJI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBJI-01A-01D_TARGET-30-PATBJI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBJI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBJI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-01A-01D	DNA	EFO	SRS640456	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-01A-01D A44069 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44069	SRX609149	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBJI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-01A-01D A44069 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44069_1_lane_dupsFlagged.bam	SRR1422955	@dbgap@:reads/SRP012002/SRS640456/SRX609149/SRR1422955/SRR1422955.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBJI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBJI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBJI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBJI-01A-01D_TARGET-30-PATBJI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBJI-01A-01D_TARGET-30-PATBJI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBJI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBJI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBJI-10A-01D	DNA	EFO	SRS640445	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBJI-10A-01D A44061 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44061	SRX609138	"Specific Capture analysis of normal sample TARGET-30-PATBJI-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBJI-10A-01D A44061 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44061_1_lane_dupsFlagged.bam	SRR1423045	@dbgap@:reads/SRP012002/SRS640445/SRX609138/SRR1423045/SRR1423045.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBJI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBKX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBKX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBKX-01A-01D_TARGET-30-PATBKX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBKX-01A-01D_TARGET-30-PATBKX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBKX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBKX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-01A-01D	DNA	EFO	SRS640386	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-01A-01D A44070 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44070	SRX609081	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATBKX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-01A-01D A44070 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44070_1_lane_dupsFlagged.bam	SRR1422978	@dbgap@:reads/SRP012002/SRS640386/SRX609081/SRR1422978/SRR1422978.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBKX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBKX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBKX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBKX-01A-01D_TARGET-30-PATBKX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBKX-01A-01D_TARGET-30-PATBKX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBKX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBKX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBKX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBKX-10A-01D	DNA	EFO	SRS640426	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBKX-10A-01D A44062 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44062	SRX609119	"Specific Capture analysis of normal sample TARGET-30-PATBKX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBKX-10A-01D A44062 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44062_1_lane_dupsFlagged.bam	SRR1422959	@dbgap@:reads/SRP012002/SRS640426/SRX609119/SRR1422959/SRR1422959.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBKX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBPG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBPG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBPG-01A-01D_TARGET-30-PATBPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBPG-01A-01D_TARGET-30-PATBPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBPG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBPG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-01A-01D	DNA	EFO	SRS640416	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-01A-01D A44071 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44071	SRX609108	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBPG-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-01A-01D A44071 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44071_1_lane_dupsFlagged.bam	SRR1422944	@dbgap@:reads/SRP012002/SRS640416/SRX609108/SRR1422944/SRR1422944.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBPG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBPG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBPG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBPG-01A-01D_TARGET-30-PATBPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBPG-01A-01D_TARGET-30-PATBPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBPG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBPG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBPG-10A-01D	DNA	EFO	SRS640359	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBPG-10A-01D A44063 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44063	SRX609052	"Specific Capture analysis of normal sample TARGET-30-PATBPG-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBPG-10A-01D A44063 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44063_1_lane_dupsFlagged.bam	SRR1422965	@dbgap@:reads/SRP012002/SRS640359/SRX609052/SRR1422965/SRR1422965.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBPG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBRX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBRX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBRX-01A-01D_TARGET-30-PATBRX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBRX-01A-01D_TARGET-30-PATBRX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBRX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBRX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-01A-01D	DNA	EFO	SRS640368	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-01A-01D A44072 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44072	SRX609061	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATBRX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-01A-01D A44072 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44072_1_lane_dupsFlagged.bam	SRR1422945	@dbgap@:reads/SRP012002/SRS640368/SRX609061/SRR1422945/SRR1422945.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBRX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATBRX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATBRX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBRX-01A-01D_TARGET-30-PATBRX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATBRX-01A-01D_TARGET-30-PATBRX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATBRX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBRX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATBRX-10A-01D	DNA	EFO	SRS640427	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATBRX-10A-01D A44064 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44064	SRX609120	"Specific Capture analysis of normal sample TARGET-30-PATBRX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATBRX-10A-01D A44064 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44064_1_lane_dupsFlagged.bam	SRR1422952	@dbgap@:reads/SRP012002/SRS640427/SRX609120/SRR1422952/SRR1422952.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATBRX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCDJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCDJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCDJ-01A-01D_TARGET-30-PATCDJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCDJ-01A-01D_TARGET-30-PATCDJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCDJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCDJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-01A-01D	DNA	EFO	SRS640369	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-01A-01D A44081 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44081	SRX609062	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCDJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-01A-01D A44081 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44081_1_lane_dupsFlagged.bam	SRR1422968	@dbgap@:reads/SRP012002/SRS640369/SRX609062/SRR1422968/SRR1422968.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCDJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCDJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCDJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCDJ-01A-01D_TARGET-30-PATCDJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCDJ-01A-01D_TARGET-30-PATCDJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCDJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCDJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCDJ-10A-01D	DNA	EFO	SRS640405	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCDJ-10A-01D A44073 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44073	SRX609098	"Specific Capture analysis of normal sample TARGET-30-PATCDJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCDJ-10A-01D A44073 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44073_1_lane_dupsFlagged.bam	SRR1423015	@dbgap@:reads/SRP012002/SRS640405/SRX609098/SRR1423015/SRR1423015.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCDJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCEM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCEM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCEM-01A-01D_TARGET-30-PATCEM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCEM-01A-01D_TARGET-30-PATCEM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCEM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCEM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-01A-01D	DNA	EFO	SRS640374	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-01A-01D A44082 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44082	SRX609067	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCEM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-01A-01D A44082 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44082_1_lane_dupsFlagged.bam	SRR1422956	@dbgap@:reads/SRP012002/SRS640374/SRX609067/SRR1422956/SRR1422956.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCEM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCEM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCEM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCEM-01A-01D_TARGET-30-PATCEM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCEM-01A-01D_TARGET-30-PATCEM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCEM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCEM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCEM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCEM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCEM-10A-01D	DNA	EFO	SRS640382	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCEM-10A-01D A44074 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44074	SRX609075	"Specific Capture analysis of normal sample TARGET-30-PATCEM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCEM-10A-01D A44074 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44074_1_lane_dupsFlagged.bam	SRR1423019	@dbgap@:reads/SRP012002/SRS640382/SRX609075/SRR1423019/SRR1423019.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCEM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCJF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCJF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJF-01A-01D_TARGET-30-PATCJF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJF-01A-01D_TARGET-30-PATCJF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCJF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-01A-01D	DNA	EFO	SRS653965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-01A-01D A44484 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44484	SRX645911	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-01A-01D A44484 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44484_1_lane_dupsFlagged.bam	SRR1506657	@dbgap@:reads/SRP012002/SRS653965/SRX645911/SRR1506657/SRR1506657.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCJF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCJF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJF-01A-01D_TARGET-30-PATCJF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJF-01A-01D_TARGET-30-PATCJF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCJF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJF-10A-01D	DNA	EFO	SRS653971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJF-10A-01D A44476 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44476	SRX645917	"Specific Capture analysis of normal sample TARGET-30-PATCJF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATCJF-10A-01D A44476 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44476_1_lane_dupsFlagged.bam	SRR1506660	@dbgap@:reads/SRP012002/SRS653971/SRX645917/SRR1506660/SRR1506660.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCJP-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCJP-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJP-09A-01D_TARGET-30-PATCJP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJP-09A-01D_TARGET-30-PATCJP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCJP-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJP-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-09A-01D	DNA	EFO	SRS640429	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-09A-01D A44083 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44083	SRX609122	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCJP-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-09A-01D A44083 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44083_1_lane_dupsFlagged.bam	SRR1423048	@dbgap@:reads/SRP012002/SRS640429/SRX609122/SRR1423048/SRR1423048.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJP-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCJP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCJP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJP-09A-01D_TARGET-30-PATCJP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCJP-09A-01D_TARGET-30-PATCJP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCJP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCJP-10A-01D	DNA	EFO	SRS640357	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCJP-10A-01D A44075 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44075	SRX609049	"Specific Capture analysis of normal sample TARGET-30-PATCJP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCJP-10A-01D A44075 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44075_1_lane_dupsFlagged.bam	SRR1423021	@dbgap@:reads/SRP012002/SRS640357/SRX609049/SRR1423021/SRR1423021.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCJP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCKU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCKU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCKU-01A-01D_TARGET-30-PATCKU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCKU-01A-01D_TARGET-30-PATCKU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCKU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCKU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-01A-01D	DNA	EFO	SRS640397	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-01A-01D A44084 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44084	SRX609090	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATCKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-01A-01D A44084 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44084_1_lane_dupsFlagged.bam	SRR1422946	@dbgap@:reads/SRP012002/SRS640397/SRX609090/SRR1422946/SRR1422946.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCKU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATCKU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATCKU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCKU-01A-01D_TARGET-30-PATCKU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATCKU-01A-01D_TARGET-30-PATCKU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATCKU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCKU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATCKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATCKU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATCKU-10A-01D	DNA	EFO	SRS640387	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATCKU-10A-01D A44076 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44076	SRX609079	"Specific Capture analysis of normal sample TARGET-30-PATCKU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATCKU-10A-01D A44076 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44076_1_lane_dupsFlagged.bam	SRR1423043	@dbgap@:reads/SRP012002/SRS640387/SRX609079/SRR1423043/SRR1423043.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATCKU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDBR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDBR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDBR-01A-01D_TARGET-30-PATDBR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDBR-01A-01D_TARGET-30-PATDBR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDBR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDBR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-01A-01D	DNA	EFO	SRS640401	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-01A-01D A44085 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44085	SRX609094	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDBR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-01A-01D A44085 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44085_1_lane_dupsFlagged.bam	SRR1423037	@dbgap@:reads/SRP012002/SRS640401/SRX609094/SRR1423037/SRR1423037.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDBR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDBR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDBR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDBR-01A-01D_TARGET-30-PATDBR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDBR-01A-01D_TARGET-30-PATDBR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDBR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDBR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDBR-10A-01D	DNA	EFO	SRS640378	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDBR-10A-01D A44077 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44077	SRX609072	"Specific Capture analysis of normal sample TARGET-30-PATDBR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDBR-10A-01D A44077 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44077_1_lane_dupsFlagged.bam	SRR1423027	@dbgap@:reads/SRP012002/SRS640378/SRX609072/SRR1423027/SRR1423027.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDBR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDCJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDCJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDCJ-01A-01D_TARGET-30-PATDCJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDCJ-01A-01D_TARGET-30-PATDCJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDCJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDCJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-01A-01D	DNA	EFO	SRS640423	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-01A-01D A44086 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44086	SRX609117	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDCJ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-01A-01D A44086 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44086_1_lane_dupsFlagged.bam	SRR1423032	@dbgap@:reads/SRP012002/SRS640423/SRX609117/SRR1423032/SRR1423032.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDCJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDCJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDCJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDCJ-01A-01D_TARGET-30-PATDCJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDCJ-01A-01D_TARGET-30-PATDCJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDCJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDCJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDCJ-10A-01D	DNA	EFO	SRS640358	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDCJ-10A-01D A44078 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44078	SRX609051	"Specific Capture analysis of normal sample TARGET-30-PATDCJ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDCJ-10A-01D A44078 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44078_1_lane_dupsFlagged.bam	SRR1422989	@dbgap@:reads/SRP012002/SRS640358/SRX609051/SRR1422989/SRR1422989.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDCJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDFU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDFU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDFU-01A-01D_TARGET-30-PATDFU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDFU-01A-01D_TARGET-30-PATDFU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDFU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDFU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-01A-01D	DNA	EFO	SRS640428	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-01A-01D A44087 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44087	SRX609121	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDFU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-01A-01D A44087 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44087_1_lane_dupsFlagged.bam	SRR1423046	@dbgap@:reads/SRP012002/SRS640428/SRX609121/SRR1423046/SRR1423046.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDFU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDFU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDFU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDFU-01A-01D_TARGET-30-PATDFU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDFU-01A-01D_TARGET-30-PATDFU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDFU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDFU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDFU-10A-01D	DNA	EFO	SRS640389	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDFU-10A-01D A44079 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44079	SRX609082	"Specific Capture analysis of normal sample TARGET-30-PATDFU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDFU-10A-01D A44079 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44079_1_lane_dupsFlagged.bam	SRR1423029	@dbgap@:reads/SRP012002/SRS640389/SRX609082/SRR1423029/SRR1423029.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDFU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDSY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDSY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDSY-01A-01D_TARGET-30-PATDSY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDSY-01A-01D_TARGET-30-PATDSY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDSY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDSY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-01A-01D	DNA	EFO	SRS640448	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-01A-01D A44088 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44088	SRX609141	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDSY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-01A-01D A44088 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44088_1_lane_dupsFlagged.bam	SRR1422977	@dbgap@:reads/SRP012002/SRS640448/SRX609141/SRR1422977/SRR1422977.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDSY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDSY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDSY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDSY-01A-01D_TARGET-30-PATDSY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDSY-01A-01D_TARGET-30-PATDSY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDSY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDSY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDSY-10A-01D	DNA	EFO	SRS640437	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDSY-10A-01D A44080 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44080	SRX609130	"Specific Capture analysis of normal sample TARGET-30-PATDSY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATDSY-10A-01D A44080 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44080_1_lane_dupsFlagged.bam	SRR1423041	@dbgap@:reads/SRP012002/SRS640437/SRX609130/SRR1423041/SRR1423041.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDSY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDVF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDVF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDVF-01A-01D_TARGET-30-PATDVF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDVF-01A-01D_TARGET-30-PATDVF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDVF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDVF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-01A-01D	DNA	EFO	SRS640353	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-01A-01D A44097 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44097	SRX609046	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATDVF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-01A-01D A44097 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44097_1_lane_dupsFlagged.bam	SRR1423026	@dbgap@:reads/SRP012002/SRS640353/SRX609046/SRR1423026/SRR1423026.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDVF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATDVF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATDVF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDVF-01A-01D_TARGET-30-PATDVF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATDVF-01A-01D_TARGET-30-PATDVF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATDVF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDVF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATDVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATDVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATDVF-10A-01D	DNA	EFO	SRS640370	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATDVF-10A-01D A44089 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44089	SRX609063	"Specific Capture analysis of normal sample TARGET-30-PATDVF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATDVF-10A-01D A44089 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44089_1_lane_dupsFlagged.bam	SRR1423012	@dbgap@:reads/SRP012002/SRS640370/SRX609063/SRR1423012/SRR1423012.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATDVF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATECM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATECM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATECM-01A-01D_TARGET-30-PATECM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATECM-01A-01D_TARGET-30-PATECM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATECM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATECM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-01A-01D	DNA	EFO	SRS640457	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-01A-01D A44098 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44098	SRX609150	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATECM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-01A-01D A44098 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44098_1_lane_dupsFlagged.bam	SRR1422953	@dbgap@:reads/SRP012002/SRS640457/SRX609150/SRR1422953/SRR1422953.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATECM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATECM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATECM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATECM-01A-01D_TARGET-30-PATECM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATECM-01A-01D_TARGET-30-PATECM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATECM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATECM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATECM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATECM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATECM-10A-01D	DNA	EFO	SRS640361	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATECM-10A-01D A44090 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44090	SRX609055	"Specific Capture analysis of normal sample TARGET-30-PATECM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATECM-10A-01D A44090 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44090_1_lane_dupsFlagged.bam	SRR1422990	@dbgap@:reads/SRP012002/SRS640361/SRX609055/SRR1422990/SRR1422990.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATECM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATEUC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATEUC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEUC-01A-01D_TARGET-30-PATEUC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEUC-01A-01D_TARGET-30-PATEUC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATEUC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEUC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-01A-01D	DNA	EFO	SRS640390	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-01A-01D A44099 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44099	SRX609083	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-01A-01D A44099 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44099_1_lane_dupsFlagged.bam	SRR1422951	@dbgap@:reads/SRP012002/SRS640390/SRX609083/SRR1422951/SRR1422951.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEUC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATEUC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATEUC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEUC-01A-01D_TARGET-30-PATEUC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEUC-01A-01D_TARGET-30-PATEUC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATEUC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEUC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATEUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEUC-10A-01D	DNA	EFO	SRS640396	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEUC-10A-01D A44091 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44091	SRX609089	"Specific Capture analysis of normal sample TARGET-30-PATEUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEUC-10A-01D A44091 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44091_1_lane_dupsFlagged.bam	SRR1423035	@dbgap@:reads/SRP012002/SRS640396/SRX609089/SRR1423035/SRR1423035.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEUC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATEWM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATEWM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEWM-01A-01D_TARGET-30-PATEWM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEWM-01A-01D_TARGET-30-PATEWM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATEWM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEWM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-01A-01D	DNA	EFO	SRS640384	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-01A-01D A44100 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44100	SRX609078	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATEWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-01A-01D A44100 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44100_1_lane_dupsFlagged.bam	SRR1422975	@dbgap@:reads/SRP012002/SRS640384/SRX609078/SRR1422975/SRR1422975.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEWM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATEWM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATEWM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEWM-01A-01D_TARGET-30-PATEWM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATEWM-01A-01D_TARGET-30-PATEWM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATEWM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEWM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATEWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATEWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATEWM-10A-01D	DNA	EFO	SRS640373	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATEWM-10A-01D A44092 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44092	SRX609066	"Specific Capture analysis of normal sample TARGET-30-PATEWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATEWM-10A-01D A44092 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44092_1_lane_dupsFlagged.bam	SRR1423008	@dbgap@:reads/SRP012002/SRS640373/SRX609066/SRR1423008/SRR1423008.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATEWM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFES-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFES-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFES-01A-01D_TARGET-30-PATFES-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFES-01A-01D_TARGET-30-PATFES-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFES-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFES-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-01A-01D	DNA	EFO	SRS640376	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-01A-01D A44101 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44101	SRX609069	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFES-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-01A-01D A44101 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44101_1_lane_dupsFlagged.bam	SRR1423031	@dbgap@:reads/SRP012002/SRS640376/SRX609069/SRR1423031/SRR1423031.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFES-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFES-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFES-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFES-01A-01D_TARGET-30-PATFES-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFES-01A-01D_TARGET-30-PATFES-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFES-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFES-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFES-10A-01D	DNA	EFO	SRS640411	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFES-10A-01D A44093 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44093	SRX609105	"Specific Capture analysis of normal sample TARGET-30-PATFES-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFES-10A-01D A44093 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44093_1_lane_dupsFlagged.bam	SRR1423009	@dbgap@:reads/SRP012002/SRS640411/SRX609105/SRR1423009/SRR1423009.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFES-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFMU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFMU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFMU-01A-01D_TARGET-30-PATFMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFMU-01A-01D_TARGET-30-PATFMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFMU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFMU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-01A-01D	DNA	EFO	SRS640420	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-01A-01D A44102 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44102	SRX609113	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFMU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-01A-01D A44102 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44102_1_lane_dupsFlagged.bam	SRR1423014	@dbgap@:reads/SRP012002/SRS640420/SRX609113/SRR1423014/SRR1423014.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFMU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFMU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFMU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFMU-01A-01D_TARGET-30-PATFMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFMU-01A-01D_TARGET-30-PATFMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFMU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFMU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFMU-10A-01D	DNA	EFO	SRS640385	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFMU-10A-01D A44094 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44094	SRX609077	"Specific Capture analysis of normal sample TARGET-30-PATFMU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFMU-10A-01D A44094 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44094_1_lane_dupsFlagged.bam	SRR1422991	@dbgap@:reads/SRP012002/SRS640385/SRX609077/SRR1422991/SRR1422991.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFMU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFPS-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFPS-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFPS-09A-01D_TARGET-30-PATFPS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFPS-09A-01D_TARGET-30-PATFPS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFPS-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFPS-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-09A-01D	DNA	EFO	SRS640366	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-09A-01D A44103 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44103	SRX609059	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATFPS-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-09A-01D A44103 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44103_1_lane_dupsFlagged.bam	SRR1423010	@dbgap@:reads/SRP012002/SRS640366/SRX609059/SRR1423010/SRR1423010.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFPS-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFPS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFPS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFPS-09A-01D_TARGET-30-PATFPS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFPS-09A-01D_TARGET-30-PATFPS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFPS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFPS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFPS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFPS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFPS-10A-01D	DNA	EFO	SRS640402	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFPS-10A-01D A44095 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44095	SRX609095	"Specific Capture analysis of normal sample TARGET-30-PATFPS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFPS-10A-01D A44095 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44095_1_lane_dupsFlagged.bam	SRR1422954	@dbgap@:reads/SRP012002/SRS640402/SRX609095/SRR1422954/SRR1422954.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFPS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTN-01A-01D_TARGET-30-PATFTN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTN-01A-01D_TARGET-30-PATFTN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-01A-01D	DNA	EFO	SRS640410	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-01A-01D A44104 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44104	SRX609103	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-01A-01D A44104 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44104_1_lane_dupsFlagged.bam	SRR1423044	@dbgap@:reads/SRP012002/SRS640410/SRX609103/SRR1423044/SRR1423044.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTN-01A-01D_TARGET-30-PATFTN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTN-01A-01D_TARGET-30-PATFTN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTN-10A-01D	DNA	EFO	SRS640381	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTN-10A-01D A44096 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44096	SRX609074	"Specific Capture analysis of normal sample TARGET-30-PATFTN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATFTN-10A-01D A44096 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44096_1_lane_dupsFlagged.bam	SRR1422982	@dbgap@:reads/SRP012002/SRS640381/SRX609074/SRR1422982/SRR1422982.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTR-01A-01D_TARGET-30-PATFTR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTR-01A-01D_TARGET-30-PATFTR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-01A-01D	DNA	EFO	SRS640407	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-01A-01D A44113 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44113	SRX609100	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-01A-01D A44113 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44113_1_lane_dupsFlagged.bam	SRR1422997	@dbgap@:reads/SRP012002/SRS640407/SRX609100/SRR1422997/SRR1422997.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTR-01A-01D_TARGET-30-PATFTR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTR-01A-01D_TARGET-30-PATFTR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTR-10A-01D	DNA	EFO	SRS640394	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTR-10A-01D A44105 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44105	SRX609087	"Specific Capture analysis of normal sample TARGET-30-PATFTR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTR-10A-01D A44105 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44105_1_lane_dupsFlagged.bam	SRR1422986	@dbgap@:reads/SRP012002/SRS640394/SRX609087/SRR1422986/SRR1422986.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTY-01A-01D_TARGET-30-PATFTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTY-01A-01D_TARGET-30-PATFTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-01A-01D	DNA	EFO	SRS640661	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-01A-01D A44114 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44114	SRX609354	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATFTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-01A-01D A44114 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44114_1_lane_dupsFlagged.bam	SRR1423242	@dbgap@:reads/SRP012002/SRS640661/SRX609354/SRR1423242/SRR1423242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATFTY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATFTY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTY-01A-01D_TARGET-30-PATFTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATFTY-01A-01D_TARGET-30-PATFTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATFTY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATFTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATFTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATFTY-10A-01D	DNA	EFO	SRS640444	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATFTY-10A-01D A44106 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44106	SRX609137	"Specific Capture analysis of normal sample TARGET-30-PATFTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATFTY-10A-01D A44106 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44106_1_lane_dupsFlagged.bam	SRR1423028	@dbgap@:reads/SRP012002/SRS640444/SRX609137/SRR1423028/SRR1423028.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATFTY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATGWU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATGWU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATGWU-01A-01D_TARGET-30-PATGWU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATGWU-01A-01D_TARGET-30-PATGWU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATGWU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATGWU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-01A-01D	DNA	EFO	SRS640616	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-01A-01D A44115 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44115	SRX609309	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-01A-01D A44115 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44115_1_lane_dupsFlagged.bam	SRR1423207	@dbgap@:reads/SRP012002/SRS640616/SRX609309/SRR1423207/SRR1423207.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATGWU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATGWU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATGWU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATGWU-01A-01D_TARGET-30-PATGWU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATGWU-01A-01D_TARGET-30-PATGWU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATGWU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATGWU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATGWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATGWU-10A-01D	DNA	EFO	SRS640434	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATGWU-10A-01D A44107 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44107	SRX609127	"Specific Capture analysis of normal sample TARGET-30-PATGWU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATGWU-10A-01D A44107 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44107_1_lane_dupsFlagged.bam	SRR1422999	@dbgap@:reads/SRP012002/SRS640434/SRX609127/SRR1422999/SRR1422999.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATGWU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHJU-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHJU-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJU-09A-01D_TARGET-30-PATHJU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJU-09A-01D_TARGET-30-PATHJU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHJU-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJU-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-09A-01D	DNA	EFO	SRS640628	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-09A-01D A44116 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44116	SRX609322	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJU-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-09A-01D A44116 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44116_1_lane_dupsFlagged.bam	SRR1423175	@dbgap@:reads/SRP012002/SRS640628/SRX609322/SRR1423175/SRR1423175.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJU-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHJU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHJU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJU-09A-01D_TARGET-30-PATHJU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJU-09A-01D_TARGET-30-PATHJU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHJU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJU-10A-01D	DNA	EFO	SRS640364	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJU-10A-01D A44108 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44108	SRX609057	"Specific Capture analysis of normal sample TARGET-30-PATHJU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATHJU-10A-01D A44108 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44108_1_lane_dupsFlagged.bam	SRR1423022	@dbgap@:reads/SRP012002/SRS640364/SRX609057/SRR1423022/SRR1423022.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHJZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHJZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJZ-01A-01D_TARGET-30-PATHJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJZ-01A-01D_TARGET-30-PATHJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHJZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-01A-01D	DNA	EFO	SRS640619	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-01A-01D A44117 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44117	SRX609312	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHJZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-01A-01D A44117 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44117_1_lane_dupsFlagged.bam	SRR1423216	@dbgap@:reads/SRP012002/SRS640619/SRX609312/SRR1423216/SRR1423216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHJZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHJZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJZ-01A-01D_TARGET-30-PATHJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHJZ-01A-01D_TARGET-30-PATHJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHJZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHJZ-10A-01D	DNA	EFO	SRS640421	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHJZ-10A-01D A44109 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44109	SRX609114	"Specific Capture analysis of normal sample TARGET-30-PATHJZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHJZ-10A-01D A44109 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44109_1_lane_dupsFlagged.bam	SRR1422973	@dbgap@:reads/SRP012002/SRS640421/SRX609114/SRR1422973/SRR1422973.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHJZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHUU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHUU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHUU-01A-01D_TARGET-30-PATHUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHUU-01A-01D_TARGET-30-PATHUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHUU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHUU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-01A-01D	DNA	EFO	SRS640660	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-01A-01D A44118 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44118	SRX609352	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHUU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-01A-01D A44118 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44118_1_lane_dupsFlagged.bam	SRR1423225	@dbgap@:reads/SRP012002/SRS640660/SRX609352/SRR1423225/SRR1423225.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHUU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHUU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHUU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHUU-01A-01D_TARGET-30-PATHUU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHUU-01A-01D_TARGET-30-PATHUU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHUU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHUU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHUU-10A-01D	DNA	EFO	SRS640354	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHUU-10A-01D A44110 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44110	SRX609047	"Specific Capture analysis of normal sample TARGET-30-PATHUU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATHUU-10A-01D A44110 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44110_1_lane_dupsFlagged.bam	SRR1423042	@dbgap@:reads/SRP012002/SRS640354/SRX609047/SRR1423042/SRR1423042.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHUU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHYK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHYK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHYK-01A-01D_TARGET-30-PATHYK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHYK-01A-01D_TARGET-30-PATHYK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHYK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHYK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-01A-01D	DNA	EFO	SRS641061	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-01A-01D A44945 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44945	SRX609978	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATHYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-01A-01D A44945 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44945_1_lane_dupsFlagged.bam	SRR1424244	@dbgap@:reads/SRP012002/SRS641061/SRX609978/SRR1424244/SRR1424244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHYK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATHYK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATHYK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHYK-01A-01D_TARGET-30-PATHYK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATHYK-01A-01D_TARGET-30-PATHYK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATHYK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHYK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATHYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATHYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATHYK-10A-01D	DNA	EFO	SRS641013	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATHYK-10A-01D A44937 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44937	SRX609931	"Specific Capture analysis of normal sample TARGET-30-PATHYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATHYK-10A-01D A44937 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44937_1_lane_dupsFlagged.bam	SRR1424273	@dbgap@:reads/SRP012002/SRS641013/SRX609931/SRR1424273/SRR1424273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATHYK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIHB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIHB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIHB-01A-01D_TARGET-30-PATIHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIHB-01A-01D_TARGET-30-PATIHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIHB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIHB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-01A-01D	DNA	EFO	SRS640597	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-01A-01D A44119 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44119	SRX609290	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIHB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-01A-01D A44119 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44119_1_lane_dupsFlagged.bam	SRR1423248	@dbgap@:reads/SRP012002/SRS640597/SRX609290/SRR1423248/SRR1423248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIHB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIHB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIHB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIHB-01A-01D_TARGET-30-PATIHB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIHB-01A-01D_TARGET-30-PATIHB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIHB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIHB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIHB-10A-01D	DNA	EFO	SRS640449	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIHB-10A-01D A44111 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44111	SRX609142	"Specific Capture analysis of normal sample TARGET-30-PATIHB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATIHB-10A-01D A44111 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44111_1_lane_dupsFlagged.bam	SRR1423007	@dbgap@:reads/SRP012002/SRS640449/SRX609142/SRR1423007/SRR1423007.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIHB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATISU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATISU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATISU-01A-01D_TARGET-30-PATISU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATISU-01A-01D_TARGET-30-PATISU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATISU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATISU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-01A-01D	DNA	EFO	SRS640581	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-01A-01D A44120 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44120	SRX609273	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATISU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-01A-01D A44120 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44120_1_lane_dupsFlagged.bam	SRR1423238	@dbgap@:reads/SRP012002/SRS640581/SRX609273/SRR1423238/SRR1423238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATISU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATISU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATISU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATISU-01A-01D_TARGET-30-PATISU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATISU-01A-01D_TARGET-30-PATISU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATISU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATISU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATISU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATISU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATISU-10A-01D	DNA	EFO	SRS640406	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATISU-10A-01D A44112 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44112	SRX609099	"Specific Capture analysis of normal sample TARGET-30-PATISU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATISU-10A-01D A44112 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44112_1_lane_dupsFlagged.bam	SRR1423025	@dbgap@:reads/SRP012002/SRS640406/SRX609099/SRR1423025/SRR1423025.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATISU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIWH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIWH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIWH-01A-01D_TARGET-30-PATIWH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIWH-01A-01D_TARGET-30-PATIWH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIWH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIWH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-01A-01D	DNA	EFO	SRS640630	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-01A-01D A44129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44129	SRX609323	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-01A-01D A44129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44129_1_lane_dupsFlagged.bam	SRR1423200	@dbgap@:reads/SRP012002/SRS640630/SRX609323/SRR1423200/SRR1423200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIWH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIWH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIWH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIWH-01A-01D_TARGET-30-PATIWH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIWH-01A-01D_TARGET-30-PATIWH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIWH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIWH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIWH-10A-01D	DNA	EFO	SRS640644	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIWH-10A-01D A44121 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44121	SRX609337	"Specific Capture analysis of normal sample TARGET-30-PATIWH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIWH-10A-01D A44121 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44121_1_lane_dupsFlagged.bam	SRR1423162	@dbgap@:reads/SRP012002/SRS640644/SRX609337/SRR1423162/SRR1423162.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIWH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIYD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIYD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIYD-09A-01D_TARGET-30-PATIYD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIYD-09A-01D_TARGET-30-PATIYD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIYD-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIYD-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-09A-01D	DNA	EFO	SRS640572	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-09A-01D A44130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44130	SRX609265	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATIYD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-09A-01D A44130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44130_1_lane_dupsFlagged.bam	SRR1423203	@dbgap@:reads/SRP012002/SRS640572/SRX609265/SRR1423203/SRR1423203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIYD-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATIYD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATIYD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIYD-09A-01D_TARGET-30-PATIYD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATIYD-09A-01D_TARGET-30-PATIYD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATIYD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIYD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATIYD-10A-01D	DNA	EFO	SRS640611	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATIYD-10A-01D A44122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44122	SRX609305	"Specific Capture analysis of normal sample TARGET-30-PATIYD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATIYD-10A-01D A44122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44122_1_lane_dupsFlagged.bam	SRR1423257	@dbgap@:reads/SRP012002/SRS640611/SRX609305/SRR1423257/SRR1423257.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATIYD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJET-01A-01D_TARGET-30-PATJET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJET-01A-01D_TARGET-30-PATJET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJET-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJET-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-01A-01D	DNA	EFO	SRS640624	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-01A-01D A44132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44132	SRX609317	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-01A-01D A44132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44132_1_lane_dupsFlagged.bam	SRR1423163	@dbgap@:reads/SRP012002/SRS640624/SRX609317/SRR1423163/SRR1423163.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJET-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJET-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJET-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJET-01A-01D_TARGET-30-PATJET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJET-01A-01D_TARGET-30-PATJET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJET-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJET-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJET-10A-01D	DNA	EFO	SRS640575	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJET-10A-01D A44124 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44124	SRX609268	"Specific Capture analysis of normal sample TARGET-30-PATJET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJET-10A-01D A44124 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44124_1_lane_dupsFlagged.bam	SRR1423183	@dbgap@:reads/SRP012002/SRS640575/SRX609268/SRR1423183/SRR1423183.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJET-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJEY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJEY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJEY-01A-01D_TARGET-30-PATJEY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJEY-01A-01D_TARGET-30-PATJEY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJEY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJEY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-01A-01D	DNA	EFO	SRS640609	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-01A-01D A44133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44133	SRX609303	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATJEY-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-01A-01D A44133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44133_1_lane_dupsFlagged.bam	SRR1423223	@dbgap@:reads/SRP012002/SRS640609/SRX609303/SRR1423223/SRR1423223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJEY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJEY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJEY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJEY-01A-01D_TARGET-30-PATJEY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJEY-01A-01D_TARGET-30-PATJEY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJEY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJEY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJEY-10A-01D	DNA	EFO	SRS640595	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJEY-10A-01D A44125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44125	SRX609288	"Specific Capture analysis of normal sample TARGET-30-PATJEY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJEY-10A-01D A44125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44125_1_lane_dupsFlagged.bam	SRR1423173	@dbgap@:reads/SRP012002/SRS640595/SRX609288/SRR1423173/SRR1423173.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJEY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJHU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJHU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJHU-01A-01D_TARGET-30-PATJHU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJHU-01A-01D_TARGET-30-PATJHU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJHU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJHU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-01A-01D	DNA	EFO	SRS640670	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-01A-01D A44134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44134	SRX609362	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJHU-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-01A-01D A44134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44134_1_lane_dupsFlagged.bam	SRR1423231	@dbgap@:reads/SRP012002/SRS640670/SRX609362/SRR1423231/SRR1423231.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJHU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJHU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJHU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJHU-01A-01D_TARGET-30-PATJHU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJHU-01A-01D_TARGET-30-PATJHU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJHU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJHU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJHU-10A-01D	DNA	EFO	SRS640663	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJHU-10A-01D A44126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44126	SRX609356	"Specific Capture analysis of normal sample TARGET-30-PATJHU-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJHU-10A-01D A44126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44126_1_lane_dupsFlagged.bam	SRR1423205	@dbgap@:reads/SRP012002/SRS640663/SRX609356/SRR1423205/SRR1423205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJHU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJIN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJIN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJIN-01A-01D_TARGET-30-PATJIN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJIN-01A-01D_TARGET-30-PATJIN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJIN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJIN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-01A-01D	DNA	EFO	SRS640569	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-01A-01D A44135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44135	SRX609263	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJIN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-01A-01D A44135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44135_1_lane_dupsFlagged.bam	SRR1423251	@dbgap@:reads/SRP012002/SRS640569/SRX609263/SRR1423251/SRR1423251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJIN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJIN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJIN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJIN-01A-01D_TARGET-30-PATJIN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJIN-01A-01D_TARGET-30-PATJIN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJIN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJIN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJIN-10A-01D	DNA	EFO	SRS640607	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJIN-10A-01D A44127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44127	SRX609301	"Specific Capture analysis of normal sample TARGET-30-PATJIN-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJIN-10A-01D A44127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44127_1_lane_dupsFlagged.bam	SRR1423219	@dbgap@:reads/SRP012002/SRS640607/SRX609301/SRR1423219/SRR1423219.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJIN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJPI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJPI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJPI-01A-01D_TARGET-30-PATJPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJPI-01A-01D_TARGET-30-PATJPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJPI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJPI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-01A-01D	DNA	EFO	SRS641003	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-01A-01D A44974 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44974	SRX609921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-01A-01D A44974 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44974_1_lane_dupsFlagged.bam	SRR1424252	@dbgap@:reads/SRP012002/SRS641003/SRX609921/SRR1424252/SRR1424252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJPI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJPI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJPI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJPI-01A-01D_TARGET-30-PATJPI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJPI-01A-01D_TARGET-30-PATJPI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJPI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJPI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJPI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJPI-10A-01D	DNA	EFO	SRS641039	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJPI-10A-01D A44966 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44966	SRX609957	"Specific Capture analysis of normal sample TARGET-30-PATJPI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATJPI-10A-01D A44966 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44966_1_lane_dupsFlagged.bam	SRR1424272	@dbgap@:reads/SRP012002/SRS641039/SRX609957/SRR1424272/SRR1424272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJPI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJXV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJXV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJXV-01A-01D_TARGET-30-PATJXV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJXV-01A-01D_TARGET-30-PATJXV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJXV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJXV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-01A-01D	DNA	EFO	SRS640618	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-01A-01D A44136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44136	SRX609310	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJXV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-01A-01D A44136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44136_1_lane_dupsFlagged.bam	SRR1423224	@dbgap@:reads/SRP012002/SRS640618/SRX609310/SRR1423224/SRR1423224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJXV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJXV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJXV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJXV-01A-01D_TARGET-30-PATJXV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJXV-01A-01D_TARGET-30-PATJXV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJXV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJXV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJXV-10A-01D	DNA	EFO	SRS640632	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJXV-10A-01D A44128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44128	SRX609325	"Specific Capture analysis of normal sample TARGET-30-PATJXV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJXV-10A-01D A44128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44128_1_lane_dupsFlagged.bam	SRR1423228	@dbgap@:reads/SRP012002/SRS640632/SRX609325/SRR1423228/SRR1423228.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJXV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJZC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJZC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZC-01A-01D_TARGET-30-PATJZC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZC-01A-01D_TARGET-30-PATJZC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJZC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-01A-01D	DNA	EFO	SRS640591	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-01A-01D A44143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44143	SRX609284	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZC-01A-01D A44143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44143_1_lane_dupsFlagged.bam	SRR1423247	@dbgap@:reads/SRP012002/SRS640591/SRX609284/SRR1423247/SRR1423247.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJZC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJZC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZC-01A-01D_TARGET-30-PATJZC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZC-01A-01D_TARGET-30-PATJZC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJZC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZC-10A-01D	DNA	EFO	SRS640651	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZC-10A-01D A44137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44137	SRX609344	"Specific Capture analysis of normal sample TARGET-30-PATJZC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZC-10A-01D A44137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44137_1_lane_dupsFlagged.bam	SRR1423195	@dbgap@:reads/SRP012002/SRS640651/SRX609344/SRR1423195/SRR1423195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJZF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJZF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZF-01A-01D_TARGET-30-PATJZF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZF-01A-01D_TARGET-30-PATJZF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJZF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-01A-01D	DNA	EFO	SRS640574	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-01A-01D A44144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44144	SRX609267	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATJZF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATJZF-01A-01D A44144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44144_1_lane_dupsFlagged.bam	SRR1423256	@dbgap@:reads/SRP012002/SRS640574/SRX609267/SRR1423256/SRR1423256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATJZF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATJZF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZF-01A-01D_TARGET-30-PATJZF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATJZF-01A-01D_TARGET-30-PATJZF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATJZF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATJZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATJZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATJZF-10A-01D	DNA	EFO	SRS640582	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATJZF-10A-01D A44138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44138	SRX609275	"Specific Capture analysis of normal sample TARGET-30-PATJZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATJZF-10A-01D A44138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44138_1_lane_dupsFlagged.bam	SRR1423199	@dbgap@:reads/SRP012002/SRS640582/SRX609275/SRR1423199/SRR1423199.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATJZF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKGB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKGB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKGB-01A-01D_TARGET-30-PATKGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKGB-01A-01D_TARGET-30-PATKGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKGB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKGB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-01A-01D	DNA	EFO	SRS640585	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-01A-01D A44145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44145	SRX609278	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-01A-01D A44145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44145_1_lane_dupsFlagged.bam	SRR1423254	@dbgap@:reads/SRP012002/SRS640585/SRX609278/SRR1423254/SRR1423254.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKGB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKGB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKGB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKGB-01A-01D_TARGET-30-PATKGB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKGB-01A-01D_TARGET-30-PATKGB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKGB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKGB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKGB-10A-01D	DNA	EFO	SRS640639	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKGB-10A-01D A44139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44139	SRX609332	"Specific Capture analysis of normal sample TARGET-30-PATKGB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKGB-10A-01D A44139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44139_1_lane_dupsFlagged.bam	SRR1423198	@dbgap@:reads/SRP012002/SRS640639/SRX609332/SRR1423198/SRR1423198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKGB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKHS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKHS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKHS-01A-01D_TARGET-30-PATKHS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKHS-01A-01D_TARGET-30-PATKHS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKHS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKHS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-01A-01D	DNA	EFO	SRS640637	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-01A-01D A44146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44146	SRX609329	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKHS-01A-01D A44146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44146_1_lane_dupsFlagged.bam	SRR1423184	@dbgap@:reads/SRP012002/SRS640637/SRX609329/SRR1423184/SRR1423184.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKHS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKHS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKHS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKHS-01A-01D_TARGET-30-PATKHS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKHS-01A-01D_TARGET-30-PATKHS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKHS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKHS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKHS-10A-01D	DNA	EFO	SRS640649	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKHS-10A-01D A44140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44140	SRX609342	"Specific Capture analysis of normal sample TARGET-30-PATKHS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKHS-10A-01D A44140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44140_1_lane_dupsFlagged.bam	SRR1423250	@dbgap@:reads/SRP012002/SRS640649/SRX609342/SRR1423250/SRR1423250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKHS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKPD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKPD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKPD-01A-01D_TARGET-30-PATKPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKPD-01A-01D_TARGET-30-PATKPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKPD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKPD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-01A-01D	DNA	EFO	SRS640588	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-01A-01D A44147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44147	SRX609281	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATKPD-01A-01D A44147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44147_1_lane_dupsFlagged.bam	SRR1423209	@dbgap@:reads/SRP012002/SRS640588/SRX609281/SRR1423209/SRR1423209.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKPD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKPD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKPD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKPD-01A-01D_TARGET-30-PATKPD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKPD-01A-01D_TARGET-30-PATKPD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKPD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKPD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKPD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKPD-10A-01D	DNA	EFO	SRS640653	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKPD-10A-01D A44141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44141	SRX609346	"Specific Capture analysis of normal sample TARGET-30-PATKPD-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKPD-10A-01D A44141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44141_1_lane_dupsFlagged.bam	SRR1423255	@dbgap@:reads/SRP012002/SRS640653/SRX609346/SRR1423255/SRR1423255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKPD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKSX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKSX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKSX-01A-01D_TARGET-30-PATKSX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKSX-01A-01D_TARGET-30-PATKSX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKSX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKSX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-01A-01D	DNA	EFO	SRS640617	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-01A-01D A44148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44148	SRX609311	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATKSX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-01A-01D A44148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44148_1_lane_dupsFlagged.bam	SRR1423243	@dbgap@:reads/SRP012002/SRS640617/SRX609311/SRR1423243/SRR1423243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKSX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATKSX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATKSX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKSX-01A-01D_TARGET-30-PATKSX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATKSX-01A-01D_TARGET-30-PATKSX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATKSX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKSX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATKSX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATKSX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATKSX-10A-01D	DNA	EFO	SRS640580	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATKSX-10A-01D A44142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44142	SRX609274	"Specific Capture analysis of normal sample TARGET-30-PATKSX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-04-09	TARGET-30-PATKSX-10A-01D A44142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44142_1_lane_dupsFlagged.bam	SRR1423241	@dbgap@:reads/SRP012002/SRS640580/SRX609274/SRR1423241/SRR1423241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATKSX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLCM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLCM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLCM-01A-01D_TARGET-30-PATLCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLCM-01A-01D_TARGET-30-PATLCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLCM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLCM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-01A-01D	DNA	EFO	SRS640636	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-01A-01D A44157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44157	SRX609330	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-01A-01D A44157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44157_1_lane_dupsFlagged.bam	SRR1423259	@dbgap@:reads/SRP012002/SRS640636/SRX609330/SRR1423259/SRR1423259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLCM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLCM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLCM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLCM-01A-01D_TARGET-30-PATLCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLCM-01A-01D_TARGET-30-PATLCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLCM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLCM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLCM-10A-01D	DNA	EFO	SRS640593	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLCM-10A-01D A44149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44149	SRX609286	"Specific Capture analysis of normal sample TARGET-30-PATLCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLCM-10A-01D A44149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44149_1_lane_dupsFlagged.bam	SRR1423253	@dbgap@:reads/SRP012002/SRS640593/SRX609286/SRR1423253/SRR1423253.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLCM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLKI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLKI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLKI-01A-01D_TARGET-30-PATLKI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLKI-01A-01D_TARGET-30-PATLKI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLKI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLKI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-01A-01D	DNA	EFO	SRS640567	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-01A-01D A44158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44158	SRX609260	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATLKI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-01A-01D A44158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44158_1_lane_dupsFlagged.bam	SRR1423208	@dbgap@:reads/SRP012002/SRS640567/SRX609260/SRR1423208/SRR1423208.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLKI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLKI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLKI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLKI-01A-01D_TARGET-30-PATLKI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLKI-01A-01D_TARGET-30-PATLKI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLKI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLKI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLKI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLKI-10A-01D	DNA	EFO	SRS640633	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLKI-10A-01D A44150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44150	SRX609326	"Specific Capture analysis of normal sample TARGET-30-PATLKI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLKI-10A-01D A44150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44150_1_lane_dupsFlagged.bam	SRR1423217	@dbgap@:reads/SRP012002/SRS640633/SRX609326/SRR1423217/SRR1423217.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLKI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLLI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLLI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLLI-01A-01D_TARGET-30-PATLLI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLLI-01A-01D_TARGET-30-PATLLI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLLI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLLI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-01A-01D	DNA	EFO	SRS640613	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-01A-01D A44159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44159	SRX609306	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-01A-01D A44159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44159_1_lane_dupsFlagged.bam	SRR1423181	@dbgap@:reads/SRP012002/SRS640613/SRX609306/SRR1423181/SRR1423181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLLI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLLI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLLI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLLI-01A-01D_TARGET-30-PATLLI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLLI-01A-01D_TARGET-30-PATLLI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLLI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLLI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLLI-10A-01D	DNA	EFO	SRS640601	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLLI-10A-01D A44151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44151	SRX609294	"Specific Capture analysis of normal sample TARGET-30-PATLLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLLI-10A-01D A44151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44151_1_lane_dupsFlagged.bam	SRR1423197	@dbgap@:reads/SRP012002/SRS640601/SRX609294/SRR1423197/SRR1423197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLLI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLNM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLNM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLNM-01A-01D_TARGET-30-PATLNM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLNM-01A-01D_TARGET-30-PATLNM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLNM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLNM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-01A-01D	DNA	EFO	SRS640656	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-01A-01D A44160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44160	SRX609349	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLNM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-01A-01D A44160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44160_1_lane_dupsFlagged.bam	SRR1423191	@dbgap@:reads/SRP012002/SRS640656/SRX609349/SRR1423191/SRR1423191.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLNM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLNM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLNM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLNM-01A-01D_TARGET-30-PATLNM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLNM-01A-01D_TARGET-30-PATLNM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLNM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLNM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLNM-10A-01D	DNA	EFO	SRS640615	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLNM-10A-01D A44152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44152	SRX609308	"Specific Capture analysis of normal sample TARGET-30-PATLNM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLNM-10A-01D A44152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44152_1_lane_dupsFlagged.bam	SRR1423174	@dbgap@:reads/SRP012002/SRS640615/SRX609308/SRR1423174/SRR1423174.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLNM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLUI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLUI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLUI-01A-01D_TARGET-30-PATLUI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLUI-01A-01D_TARGET-30-PATLUI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLUI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLUI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-01A-01D	DNA	EFO	SRS640586	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-01A-01D A44161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44161	SRX609279	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATLUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-01A-01D A44161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44161_1_lane_dupsFlagged.bam	SRR1423233	@dbgap@:reads/SRP012002/SRS640586/SRX609279/SRR1423233/SRR1423233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLUI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLUI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLUI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLUI-01A-01D_TARGET-30-PATLUI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLUI-01A-01D_TARGET-30-PATLUI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLUI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLUI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLUI-10A-01D	DNA	EFO	SRS640654	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLUI-10A-01D A44153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44153	SRX609347	"Specific Capture analysis of normal sample TARGET-30-PATLUI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLUI-10A-01D A44153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44153_1_lane_dupsFlagged.bam	SRR1423157	@dbgap@:reads/SRP012002/SRS640654/SRX609347/SRR1423157/SRR1423157.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLUI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLXP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLXP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLXP-01A-01D_TARGET-30-PATLXP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLXP-01A-01D_TARGET-30-PATLXP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLXP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLXP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-01A-01D	DNA	EFO	SRS640620	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-01A-01D A44162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44162	SRX609314	"Specific Capture analysis of Neoplasm sample TARGET-30-PATLXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-01A-01D A44162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44162_1_lane_dupsFlagged.bam	SRR1423235	@dbgap@:reads/SRP012002/SRS640620/SRX609314/SRR1423235/SRR1423235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLXP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATLXP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATLXP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLXP-01A-01D_TARGET-30-PATLXP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATLXP-01A-01D_TARGET-30-PATLXP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATLXP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLXP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATLXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATLXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATLXP-10A-01D	DNA	EFO	SRS640641	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATLXP-10A-01D A44154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44154	SRX609333	"Specific Capture analysis of normal sample TARGET-30-PATLXP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATLXP-10A-01D A44154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44154_1_lane_dupsFlagged.bam	SRR1423178	@dbgap@:reads/SRP012002/SRS640641/SRX609333/SRR1423178/SRR1423178.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATLXP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMAJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMAJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAJ-01A-01D_TARGET-30-PATMAJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAJ-01A-01D_TARGET-30-PATMAJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMAJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-01A-01D	DNA	EFO	SRS640648	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-01A-01D A44163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44163	SRX609341	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-01A-01D A44163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44163_1_lane_dupsFlagged.bam	SRR1423252	@dbgap@:reads/SRP012002/SRS640648/SRX609341/SRR1423252/SRR1423252.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMAJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMAJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAJ-01A-01D_TARGET-30-PATMAJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAJ-01A-01D_TARGET-30-PATMAJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMAJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAJ-10A-01D	DNA	EFO	SRS640566	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAJ-10A-01D A44155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44155	SRX609259	"Specific Capture analysis of normal sample TARGET-30-PATMAJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAJ-10A-01D A44155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44155_1_lane_dupsFlagged.bam	SRR1423258	@dbgap@:reads/SRP012002/SRS640566/SRX609259/SRR1423258/SRR1423258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMAW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMAW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAW-01A-01D_TARGET-30-PATMAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAW-01A-01D_TARGET-30-PATMAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMAW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-01A-01D	DNA	EFO	SRS640646	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-01A-01D A44164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44164	SRX609339	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-01A-01D A44164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44164_1_lane_dupsFlagged.bam	SRR1423165	@dbgap@:reads/SRP012002/SRS640646/SRX609339/SRR1423165/SRR1423165.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMAW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMAW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAW-01A-01D_TARGET-30-PATMAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMAW-01A-01D_TARGET-30-PATMAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMAW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMAW-10A-01D	DNA	EFO	SRS640596	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMAW-10A-01D A44156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44156	SRX609289	"Specific Capture analysis of normal sample TARGET-30-PATMAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMAW-10A-01D A44156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44156_1_lane_dupsFlagged.bam	SRR1423196	@dbgap@:reads/SRP012002/SRS640596/SRX609289/SRR1423196/SRR1423196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMAW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMFL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMFL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMFL-01A-01D_TARGET-30-PATMFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMFL-01A-01D_TARGET-30-PATMFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMFL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMFL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-01A-01D	DNA	EFO	SRS640600	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-01A-01D A44173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44173	SRX609293	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-01A-01D A44173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44173_1_lane_dupsFlagged.bam	SRR1423177	@dbgap@:reads/SRP012002/SRS640600/SRX609293/SRR1423177/SRR1423177.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMFL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMFL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMFL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMFL-01A-01D_TARGET-30-PATMFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMFL-01A-01D_TARGET-30-PATMFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMFL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMFL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMFL-10A-01D	DNA	EFO	SRS640631	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMFL-10A-01D A44165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44165	SRX609324	"Specific Capture analysis of normal sample TARGET-30-PATMFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMFL-10A-01D A44165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44165_1_lane_dupsFlagged.bam	SRR1423187	@dbgap@:reads/SRP012002/SRS640631/SRX609324/SRR1423187/SRR1423187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMFL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMJV-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMJV-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMJV-09A-01D_TARGET-30-PATMJV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMJV-09A-01D_TARGET-30-PATMJV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMJV-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMJV-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-09A-01D	DNA	EFO	SRS640658	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-09A-01D A44174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44174	SRX609351	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PATMJV-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-09A-01D A44174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44174_1_lane_dupsFlagged.bam	SRR1423234	@dbgap@:reads/SRP012002/SRS640658/SRX609351/SRR1423234/SRR1423234.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMJV-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMJV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMJV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMJV-09A-01D_TARGET-30-PATMJV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMJV-09A-01D_TARGET-30-PATMJV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMJV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMJV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMJV-10A-01D	DNA	EFO	SRS640657	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMJV-10A-01D A44166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44166	SRX609350	"Specific Capture analysis of normal sample TARGET-30-PATMJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMJV-10A-01D A44166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44166_1_lane_dupsFlagged.bam	SRR1423212	@dbgap@:reads/SRP012002/SRS640657/SRX609350/SRR1423212/SRR1423212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMJV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMPC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMPC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMPC-01A-01D_TARGET-30-PATMPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMPC-01A-01D_TARGET-30-PATMPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMPC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMPC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-01A-01D	DNA	EFO	SRS640667	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-01A-01D A44175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44175	SRX609360	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-01A-01D A44175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44175_1_lane_dupsFlagged.bam	SRR1423215	@dbgap@:reads/SRP012002/SRS640667/SRX609360/SRR1423215/SRR1423215.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMPC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMPC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMPC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMPC-01A-01D_TARGET-30-PATMPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMPC-01A-01D_TARGET-30-PATMPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMPC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMPC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMPC-10A-01D	DNA	EFO	SRS640571	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMPC-10A-01D A44167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44167	SRX609264	"Specific Capture analysis of normal sample TARGET-30-PATMPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMPC-10A-01D A44167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44167_1_lane_dupsFlagged.bam	SRR1423164	@dbgap@:reads/SRP012002/SRS640571/SRX609264/SRR1423164/SRR1423164.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMPC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMRZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMRZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMRZ-01A-01D_TARGET-30-PATMRZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMRZ-01A-01D_TARGET-30-PATMRZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMRZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMRZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-01A-01D	DNA	EFO	SRS640612	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-01A-01D A44176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44176	SRX609296	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-01A-01D A44176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44176_1_lane_dupsFlagged.bam	SRR1423182	@dbgap@:reads/SRP012002/SRS640612/SRX609296/SRR1423182/SRR1423182.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMRZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMRZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMRZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMRZ-01A-01D_TARGET-30-PATMRZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMRZ-01A-01D_TARGET-30-PATMRZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMRZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMRZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMRZ-10A-01D	DNA	EFO	SRS640608	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMRZ-10A-01D A44168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44168	SRX609302	"Specific Capture analysis of normal sample TARGET-30-PATMRZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMRZ-10A-01D A44168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44168_1_lane_dupsFlagged.bam	SRR1423230	@dbgap@:reads/SRP012002/SRS640608/SRX609302/SRR1423230/SRR1423230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMRZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMSI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMSI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSI-01A-01D_TARGET-30-PATMSI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSI-01A-01D_TARGET-30-PATMSI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMSI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-01A-01D	DNA	EFO	SRS641108	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-01A-01D A44986 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44986	SRX610026	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMSI-01A-01D A44986 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44986_1_lane_dupsFlagged.bam	SRR1424195	@dbgap@:reads/SRP012002/SRS641108/SRX610026/SRR1424195/SRR1424195.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMSI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMSI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSI-01A-01D_TARGET-30-PATMSI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSI-01A-01D_TARGET-30-PATMSI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMSI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSI-10A-01D	DNA	EFO	SRS641048	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSI-10A-01D A44981 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44981	SRX609966	"Specific Capture analysis of normal sample TARGET-30-PATMSI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATMSI-10A-01D A44981 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44981_1_lane_dupsFlagged.bam	SRR1424283	@dbgap@:reads/SRP012002/SRS641048/SRX609966/SRR1424283/SRR1424283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMSR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMSR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSR-01A-01D_TARGET-30-PATMSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSR-01A-01D_TARGET-30-PATMSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMSR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-01A-01D	DNA	EFO	SRS640659	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-01A-01D A44177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44177	SRX609353	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-01A-01D A44177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44177_1_lane_dupsFlagged.bam	SRR1423236	@dbgap@:reads/SRP012002/SRS640659/SRX609353/SRR1423236/SRR1423236.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMSR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMSR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSR-01A-01D_TARGET-30-PATMSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMSR-01A-01D_TARGET-30-PATMSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMSR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMSR-10A-01D	DNA	EFO	SRS640643	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMSR-10A-01D A44169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44169	SRX609336	"Specific Capture analysis of normal sample TARGET-30-PATMSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMSR-10A-01D A44169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44169_1_lane_dupsFlagged.bam	SRR1423189	@dbgap@:reads/SRP012002/SRS640643/SRX609336/SRR1423189/SRR1423189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMSR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMTX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMTX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMTX-01A-01D_TARGET-30-PATMTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMTX-01A-01D_TARGET-30-PATMTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMTX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMTX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-01A-01D	DNA	EFO	SRS641101	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-01A-01D A44946 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44946	SRX610019	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMTX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-01A-01D A44946 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44946_1_lane_dupsFlagged.bam	SRR1424218	@dbgap@:reads/SRP012002/SRS641101/SRX610019/SRR1424218/SRR1424218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMTX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMTX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMTX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMTX-01A-01D_TARGET-30-PATMTX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMTX-01A-01D_TARGET-30-PATMTX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMTX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMTX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMTX-10A-01D	DNA	EFO	SRS641049	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMTX-10A-01D A44938 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44938	SRX609968	"Specific Capture analysis of normal sample TARGET-30-PATMTX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATMTX-10A-01D A44938 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44938_1_lane_dupsFlagged.bam	SRR1424268	@dbgap@:reads/SRP012002/SRS641049/SRX609968/SRR1424268/SRR1424268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMTX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMXC-01A-01D_TARGET-30-PATMXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMXC-01A-01D_TARGET-30-PATMXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-01A-01D	DNA	EFO	SRS640640	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-01A-01D A44178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44178	SRX609334	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-01A-01D A44178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44178_1_lane_dupsFlagged.bam	SRR1423213	@dbgap@:reads/SRP012002/SRS640640/SRX609334/SRR1423213/SRR1423213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATMXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATMXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMXC-01A-01D_TARGET-30-PATMXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATMXC-01A-01D_TARGET-30-PATMXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATMXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATMXC-10A-01D	DNA	EFO	SRS640603	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATMXC-10A-01D A44170 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44170	SRX609297	"Specific Capture analysis of normal sample TARGET-30-PATMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATMXC-10A-01D A44170 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44170_1_lane_dupsFlagged.bam	SRR1423192	@dbgap@:reads/SRP012002/SRS640603/SRX609297/SRR1423192/SRR1423192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATMXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNCI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNCI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNCI-01A-01D_TARGET-30-PATNCI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNCI-01A-01D_TARGET-30-PATNCI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNCI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNCI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-01A-01D	DNA	EFO	SRS640583	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-01A-01D A44179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44179	SRX609277	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNCI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-01A-01D A44179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44179_1_lane_dupsFlagged.bam	SRR1423206	@dbgap@:reads/SRP012002/SRS640583/SRX609277/SRR1423206/SRR1423206.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNCI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNCI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNCI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNCI-01A-01D_TARGET-30-PATNCI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNCI-01A-01D_TARGET-30-PATNCI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNCI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNCI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNCI-10A-01D	DNA	EFO	SRS640602	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNCI-10A-01D A44171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44171	SRX609295	"Specific Capture analysis of normal sample TARGET-30-PATNCI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNCI-10A-01D A44171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44171_1_lane_dupsFlagged.bam	SRR1423222	@dbgap@:reads/SRP012002/SRS640602/SRX609295/SRR1423222/SRR1423222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNCI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNEA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNEA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNEA-01A-01D_TARGET-30-PATNEA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNEA-01A-01D_TARGET-30-PATNEA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNEA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNEA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-01A-01D	DNA	EFO	SRS640576	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-01A-01D A44180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44180	SRX609269	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-01A-01D A44180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44180_1_lane_dupsFlagged.bam	SRR1423193	@dbgap@:reads/SRP012002/SRS640576/SRX609269/SRR1423193/SRR1423193.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNEA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNEA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNEA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNEA-01A-01D_TARGET-30-PATNEA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNEA-01A-01D_TARGET-30-PATNEA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNEA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNEA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNEA-10A-01D	DNA	EFO	SRS640573	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNEA-10A-01D A44172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44172	SRX609266	"Specific Capture analysis of normal sample TARGET-30-PATNEA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNEA-10A-01D A44172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44172_1_lane_dupsFlagged.bam	SRR1423167	@dbgap@:reads/SRP012002/SRS640573/SRX609266/SRR1423167/SRR1423167.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNEA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNGD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNGD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNGD-01A-01D_TARGET-30-PATNGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNGD-01A-01D_TARGET-30-PATNGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNGD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNGD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-01A-01D	DNA	EFO	SRS640594	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-01A-01D A44189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44189	SRX609287	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-01A-01D A44189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44189_1_lane_dupsFlagged.bam	SRR1423161	@dbgap@:reads/SRP012002/SRS640594/SRX609287/SRR1423161/SRR1423161.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNGD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNGD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNGD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNGD-01A-01D_TARGET-30-PATNGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNGD-01A-01D_TARGET-30-PATNGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNGD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNGD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNGD-10A-01D	DNA	EFO	SRS640621	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNGD-10A-01D A44181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44181	SRX609313	"Specific Capture analysis of normal sample TARGET-30-PATNGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNGD-10A-01D A44181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44181_1_lane_dupsFlagged.bam	SRR1423210	@dbgap@:reads/SRP012002/SRS640621/SRX609313/SRR1423210/SRR1423210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNGD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNPW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNPW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNPW-01A-01D_TARGET-30-PATNPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNPW-01A-01D_TARGET-30-PATNPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNPW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNPW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-01A-01D	DNA	EFO	SRS640564	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-01A-01D A44190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44190	SRX609257	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-01A-01D A44190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44190_1_lane_dupsFlagged.bam	SRR1423220	@dbgap@:reads/SRP012002/SRS640564/SRX609257/SRR1423220/SRR1423220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNPW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNPW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNPW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNPW-01A-01D_TARGET-30-PATNPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNPW-01A-01D_TARGET-30-PATNPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNPW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNPW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNPW-10A-01D	DNA	EFO	SRS640662	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNPW-10A-01D A44182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44182	SRX609355	"Specific Capture analysis of normal sample TARGET-30-PATNPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNPW-10A-01D A44182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44182_1_lane_dupsFlagged.bam	SRR1423190	@dbgap@:reads/SRP012002/SRS640662/SRX609355/SRR1423190/SRR1423190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNPW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNRI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNRI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRI-01A-01D_TARGET-30-PATNRI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRI-01A-01D_TARGET-30-PATNRI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNRI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-01A-01D	DNA	EFO	SRS640634	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-01A-01D A44191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44191	SRX609327	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-01A-01D A44191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44191_1_lane_dupsFlagged.bam	SRR1423244	@dbgap@:reads/SRP012002/SRS640634/SRX609327/SRR1423244/SRR1423244.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNRI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNRI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRI-01A-01D_TARGET-30-PATNRI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRI-01A-01D_TARGET-30-PATNRI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNRI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRI-10A-01D	DNA	EFO	SRS640647	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRI-10A-01D A44183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44183	SRX609340	"Specific Capture analysis of normal sample TARGET-30-PATNRI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRI-10A-01D A44183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44183_1_lane_dupsFlagged.bam	SRR1423159	@dbgap@:reads/SRP012002/SRS640647/SRX609340/SRR1423159/SRR1423159.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNRK-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNRK-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRK-09A-01D_TARGET-30-PATNRK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRK-09A-01D_TARGET-30-PATNRK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNRK-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRK-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-09A-01D	DNA	EFO	SRS640625	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-09A-01D A44192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44192	SRX609318	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNRK-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-09A-01D A44192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44192_1_lane_dupsFlagged.bam	SRR1423226	@dbgap@:reads/SRP012002/SRS640625/SRX609318/SRR1423226/SRR1423226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRK-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNRK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNRK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRK-09A-01D_TARGET-30-PATNRK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNRK-09A-01D_TARGET-30-PATNRK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNRK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNRK-10A-01D	DNA	EFO	SRS640622	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNRK-10A-01D A44184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44184	SRX609315	"Specific Capture analysis of normal sample TARGET-30-PATNRK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNRK-10A-01D A44184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44184_1_lane_dupsFlagged.bam	SRR1423186	@dbgap@:reads/SRP012002/SRS640622/SRX609315/SRR1423186/SRR1423186.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNRK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNWL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNWL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNWL-01A-01D_TARGET-30-PATNWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNWL-01A-01D_TARGET-30-PATNWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNWL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNWL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-01A-01D	DNA	EFO	SRS640652	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-01A-01D A44193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44193	SRX609345	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNWL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-01A-01D A44193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44193_1_lane_dupsFlagged.bam	SRR1423211	@dbgap@:reads/SRP012002/SRS640652/SRX609345/SRR1423211/SRR1423211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNWL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNWL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNWL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNWL-01A-01D_TARGET-30-PATNWL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNWL-01A-01D_TARGET-30-PATNWL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNWL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNWL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNWL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNWL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNWL-10A-01D	DNA	EFO	SRS640579	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNWL-10A-01D A44185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44185	SRX609272	"Specific Capture analysis of normal sample TARGET-30-PATNWL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNWL-10A-01D A44185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44185_1_lane_dupsFlagged.bam	SRR1423168	@dbgap@:reads/SRP012002/SRS640579/SRX609272/SRR1423168/SRR1423168.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNWL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNXK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNXK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNXK-01A-01D_TARGET-30-PATNXK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNXK-01A-01D_TARGET-30-PATNXK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNXK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNXK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-01A-01D	DNA	EFO	SRS640592	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-01A-01D A44194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44194	SRX609285	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATNXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-01A-01D A44194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44194_1_lane_dupsFlagged.bam	SRR1423202	@dbgap@:reads/SRP012002/SRS640592/SRX609285/SRR1423202/SRR1423202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNXK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNXK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNXK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNXK-01A-01D_TARGET-30-PATNXK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNXK-01A-01D_TARGET-30-PATNXK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNXK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNXK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNXK-10A-01D	DNA	EFO	SRS640627	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNXK-10A-01D A44186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44186	SRX609320	"Specific Capture analysis of normal sample TARGET-30-PATNXK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNXK-10A-01D A44186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44186_1_lane_dupsFlagged.bam	SRR1423171	@dbgap@:reads/SRP012002/SRS640627/SRX609320/SRR1423171/SRR1423171.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNXK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNZJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNZJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNZJ-01A-01D_TARGET-30-PATNZJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNZJ-01A-01D_TARGET-30-PATNZJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNZJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNZJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-01A-01D	DNA	EFO	SRS640568	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-01A-01D A44195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44195	SRX609261	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATNZJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-01A-01D A44195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44195_1_lane_dupsFlagged.bam	SRR1423172	@dbgap@:reads/SRP012002/SRS640568/SRX609261/SRR1423172/SRR1423172.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNZJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATNZJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATNZJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNZJ-01A-01D_TARGET-30-PATNZJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATNZJ-01A-01D_TARGET-30-PATNZJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATNZJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNZJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATNZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATNZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATNZJ-10A-01D	DNA	EFO	SRS640604	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATNZJ-10A-01D A44187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44187	SRX609298	"Specific Capture analysis of normal sample TARGET-30-PATNZJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATNZJ-10A-01D A44187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44187_1_lane_dupsFlagged.bam	SRR1423179	@dbgap@:reads/SRP012002/SRS640604/SRX609298/SRR1423179/SRR1423179.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATNZJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPET-01A-01D_TARGET-30-PATPET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPET-01A-01D_TARGET-30-PATPET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPET-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPET-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-01A-01D	DNA	EFO	SRS640578	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-01A-01D A44196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44196	SRX609271	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-01A-01D A44196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44196_1_lane_dupsFlagged.bam	SRR1423204	@dbgap@:reads/SRP012002/SRS640578/SRX609271/SRR1423204/SRR1423204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPET-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPET-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPET-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPET-01A-01D_TARGET-30-PATPET-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPET-01A-01D_TARGET-30-PATPET-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPET-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPET-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPET-10A-01D	DNA	EFO	SRS640614	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPET-10A-01D A44188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44188	SRX609307	"Specific Capture analysis of normal sample TARGET-30-PATPET-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPET-10A-01D A44188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44188_1_lane_dupsFlagged.bam	SRR1423188	@dbgap@:reads/SRP012002/SRS640614/SRX609307/SRR1423188/SRR1423188.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPET-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPHR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPHR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPHR-01A-01D_TARGET-30-PATPHR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPHR-01A-01D_TARGET-30-PATPHR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPHR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPHR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-01A-01D	DNA	EFO	SRS640570	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-01A-01D A44205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44205	SRX609262	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPHR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-01A-01D A44205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44205_1_lane_dupsFlagged.bam	SRR1423261	@dbgap@:reads/SRP012002/SRS640570/SRX609262/SRR1423261/SRR1423261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPHR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPHR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPHR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPHR-01A-01D_TARGET-30-PATPHR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPHR-01A-01D_TARGET-30-PATPHR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPHR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPHR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPHR-10A-01D	DNA	EFO	SRS640635	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPHR-10A-01D A44197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44197	SRX609328	"Specific Capture analysis of normal sample TARGET-30-PATPHR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPHR-10A-01D A44197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44197_1_lane_dupsFlagged.bam	SRR1423160	@dbgap@:reads/SRP012002/SRS640635/SRX609328/SRR1423160/SRR1423160.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPHR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPJD-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPJD-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPJD-09A-01D_TARGET-30-PATPJD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPJD-09A-01D_TARGET-30-PATPJD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPJD-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPJD-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-09A-01D	DNA	EFO	SRS640565	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-09A-01D A44206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44206	SRX609258	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPJD-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-09A-01D A44206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44206_1_lane_dupsFlagged.bam	SRR1423158	@dbgap@:reads/SRP012002/SRS640565/SRX609258/SRR1423158/SRR1423158.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPJD-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPJD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPJD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPJD-09A-01D_TARGET-30-PATPJD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPJD-09A-01D_TARGET-30-PATPJD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPJD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPJD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPJD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPJD-10A-01D	DNA	EFO	SRS640666	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPJD-10A-01D A44198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44198	SRX609359	"Specific Capture analysis of normal sample TARGET-30-PATPJD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPJD-10A-01D A44198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44198_1_lane_dupsFlagged.bam	SRR1423180	@dbgap@:reads/SRP012002/SRS640666/SRX609359/SRR1423180/SRR1423180.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPJD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPNR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPNR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPNR-01A-01D_TARGET-30-PATPNR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPNR-01A-01D_TARGET-30-PATPNR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPNR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPNR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-01A-01D	DNA	EFO	SRS640598	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-01A-01D A44207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44207	SRX609292	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-01A-01D A44207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44207_1_lane_dupsFlagged.bam	SRR1423229	@dbgap@:reads/SRP012002/SRS640598/SRX609292/SRR1423229/SRR1423229.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPNR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPNR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPNR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPNR-01A-01D_TARGET-30-PATPNR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPNR-01A-01D_TARGET-30-PATPNR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPNR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPNR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPNR-10A-01D	DNA	EFO	SRS640589	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPNR-10A-01D A44199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44199	SRX609282	"Specific Capture analysis of normal sample TARGET-30-PATPNR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPNR-10A-01D A44199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44199_1_lane_dupsFlagged.bam	SRR1423218	@dbgap@:reads/SRP012002/SRS640589/SRX609282/SRR1423218/SRR1423218.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPNR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPPK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPPK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPK-01A-01D_TARGET-30-PATPPK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPK-01A-01D_TARGET-30-PATPPK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPPK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-01A-01D	DNA	EFO	SRS640626	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-01A-01D A44208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44208	SRX609319	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-01A-01D A44208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44208_1_lane_dupsFlagged.bam	SRR1423237	@dbgap@:reads/SRP012002/SRS640626/SRX609319/SRR1423237/SRR1423237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPPK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPPK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPK-01A-01D_TARGET-30-PATPPK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPK-01A-01D_TARGET-30-PATPPK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPPK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPK-10A-01D	DNA	EFO	SRS640590	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPK-10A-01D A44200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44200	SRX609283	"Specific Capture analysis of normal sample TARGET-30-PATPPK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPK-10A-01D A44200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44200_1_lane_dupsFlagged.bam	SRR1423221	@dbgap@:reads/SRP012002/SRS640590/SRX609283/SRR1423221/SRR1423221.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPPU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPPU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPU-01A-01D_TARGET-30-PATPPU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPU-01A-01D_TARGET-30-PATPPU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPPU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-01A-01D	DNA	EFO	SRS640577	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-01A-01D A44209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44209	SRX609270	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-01A-01D A44209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44209_1_lane_dupsFlagged.bam	SRR1423260	@dbgap@:reads/SRP012002/SRS640577/SRX609270/SRR1423260/SRR1423260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPPU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPPU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPU-01A-01D_TARGET-30-PATPPU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPPU-01A-01D_TARGET-30-PATPPU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPPU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPPU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPPU-10A-01D	DNA	EFO	SRS640650	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPPU-10A-01D A44201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44201	SRX609343	"Specific Capture analysis of normal sample TARGET-30-PATPPU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPPU-10A-01D A44201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44201_1_lane_dupsFlagged.bam	SRR1423245	@dbgap@:reads/SRP012002/SRS640650/SRX609343/SRR1423245/SRR1423245.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPPU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPXF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPXF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXF-01A-01D_TARGET-30-PATPXF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXF-01A-01D_TARGET-30-PATPXF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPXF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-01A-01D	DNA	EFO	SRS640878	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-01A-01D A44485 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44485	SRX609570	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-01A-01D A44485 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44485_1_lane_dupsFlagged.bam	SRR1423535	@dbgap@:reads/SRP012002/SRS640878/SRX609570/SRR1423535/SRR1423535.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPXF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPXF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXF-01A-01D_TARGET-30-PATPXF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXF-01A-01D_TARGET-30-PATPXF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPXF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXF-10A-01D	DNA	EFO	SRS640882	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXF-10A-01D A44477 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44477	SRX609575	"Specific Capture analysis of normal sample TARGET-30-PATPXF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATPXF-10A-01D A44477 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44477_1_lane_dupsFlagged.bam	SRR1423556	@dbgap@:reads/SRP012002/SRS640882/SRX609575/SRR1423556/SRR1423556.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPXJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPXJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXJ-01A-01D_TARGET-30-PATPXJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXJ-01A-01D_TARGET-30-PATPXJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPXJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-01A-01D	DNA	EFO	SRS640587	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-01A-01D A44210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44210	SRX609280	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATPXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-01A-01D A44210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44210_1_lane_dupsFlagged.bam	SRR1423246	@dbgap@:reads/SRP012002/SRS640587/SRX609280/SRR1423246/SRR1423246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPXJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPXJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXJ-01A-01D_TARGET-30-PATPXJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPXJ-01A-01D_TARGET-30-PATPXJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPXJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPXJ-10A-01D	DNA	EFO	SRS640665	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPXJ-10A-01D A44202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44202	SRX609358	"Specific Capture analysis of normal sample TARGET-30-PATPXJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPXJ-10A-01D A44202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44202_1_lane_dupsFlagged.bam	SRR1423201	@dbgap@:reads/SRP012002/SRS640665/SRX609358/SRR1423201/SRR1423201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPXJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPYK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPYK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPYK-01A-01D_TARGET-30-PATPYK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPYK-01A-01D_TARGET-30-PATPYK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPYK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPYK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-01A-01D	DNA	EFO	SRS640629	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-01A-01D A44211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44211	SRX609321	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATPYK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-01A-01D A44211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44211_1_lane_dupsFlagged.bam	SRR1423169	@dbgap@:reads/SRP012002/SRS640629/SRX609321/SRR1423169/SRR1423169.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPYK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATPYK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATPYK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPYK-01A-01D_TARGET-30-PATPYK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATPYK-01A-01D_TARGET-30-PATPYK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATPYK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPYK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATPYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATPYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATPYK-10A-01D	DNA	EFO	SRS640605	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATPYK-10A-01D A44203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44203	SRX609299	"Specific Capture analysis of normal sample TARGET-30-PATPYK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATPYK-10A-01D A44203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44203_1_lane_dupsFlagged.bam	SRR1423176	@dbgap@:reads/SRP012002/SRS640605/SRX609299/SRR1423176/SRR1423176.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATPYK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRHD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRHD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRHD-01A-01D_TARGET-30-PATRHD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRHD-01A-01D_TARGET-30-PATRHD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRHD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRHD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-01A-01D	DNA	EFO	SRS640638	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-01A-01D A44212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44212	SRX609331	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-01A-01D A44212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44212_1_lane_dupsFlagged.bam	SRR1423156	@dbgap@:reads/SRP012002/SRS640638/SRX609331/SRR1423156/SRR1423156.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRHD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRHD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRHD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRHD-01A-01D_TARGET-30-PATRHD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRHD-01A-01D_TARGET-30-PATRHD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRHD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRHD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRHD-10A-01D	DNA	EFO	SRS640606	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRHD-10A-01D A44204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44204	SRX609300	"Specific Capture analysis of normal sample TARGET-30-PATRHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRHD-10A-01D A44204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44204_1_lane_dupsFlagged.bam	SRR1423249	@dbgap@:reads/SRP012002/SRS640606/SRX609300/SRR1423249/SRR1423249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRHD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRJG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRJG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJG-01A-01D_TARGET-30-PATRJG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJG-01A-01D_TARGET-30-PATRJG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRJG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-01A-01D	DNA	EFO	SRS640770	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-01A-01D A44221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44221	SRX609463	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-01A-01D A44221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44221_1_lane_dupsFlagged.bam	SRR1423293	@dbgap@:reads/SRP012002/SRS640770/SRX609463/SRR1423293/SRR1423293.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRJG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRJG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJG-01A-01D_TARGET-30-PATRJG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJG-01A-01D_TARGET-30-PATRJG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRJG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJG-10A-01D	DNA	EFO	SRS640664	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJG-10A-01D A44213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44213	SRX609357	"Specific Capture analysis of normal sample TARGET-30-PATRJG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJG-10A-01D A44213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44213_1_lane_dupsFlagged.bam	SRR1423239	@dbgap@:reads/SRP012002/SRS640664/SRX609357/SRR1423239/SRR1423239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRJK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRJK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJK-01A-01D_TARGET-30-PATRJK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJK-01A-01D_TARGET-30-PATRJK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRJK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-01A-01D	DNA	EFO	SRS640748	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-01A-01D A44222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44222	SRX609441	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-01A-01D A44222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44222_1_lane_dupsFlagged.bam	SRR1423300	@dbgap@:reads/SRP012002/SRS640748/SRX609441/SRR1423300/SRR1423300.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRJK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRJK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJK-01A-01D_TARGET-30-PATRJK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRJK-01A-01D_TARGET-30-PATRJK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRJK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRJK-10A-01D	DNA	EFO	SRS640668	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRJK-10A-01D A44214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44214	SRX609361	"Specific Capture analysis of normal sample TARGET-30-PATRJK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRJK-10A-01D A44214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44214_1_lane_dupsFlagged.bam	SRR1423232	@dbgap@:reads/SRP012002/SRS640668/SRX609361/SRR1423232/SRR1423232.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRJK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRMB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRMB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRMB-01A-01D_TARGET-30-PATRMB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRMB-01A-01D_TARGET-30-PATRMB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRMB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRMB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-01A-01D	DNA	EFO	SRS640710	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-01A-01D A44223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44223	SRX609403	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-01A-01D A44223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44223_1_lane_dupsFlagged.bam	SRR1423325	@dbgap@:reads/SRP012002/SRS640710/SRX609403/SRR1423325/SRR1423325.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRMB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRMB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRMB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRMB-01A-01D_TARGET-30-PATRMB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRMB-01A-01D_TARGET-30-PATRMB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRMB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRMB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRMB-10A-01D	DNA	EFO	SRS640642	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRMB-10A-01D A44215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44215	SRX609335	"Specific Capture analysis of normal sample TARGET-30-PATRMB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRMB-10A-01D A44215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44215_1_lane_dupsFlagged.bam	SRR1423170	@dbgap@:reads/SRP012002/SRS640642/SRX609335/SRR1423170/SRR1423170.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRMB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRUL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRUL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUL-01A-01D_TARGET-30-PATRUL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUL-01A-01D_TARGET-30-PATRUL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRUL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-01A-01D	DNA	EFO	SRS640774	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-01A-01D A44224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44224	SRX609467	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATRUL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-01A-01D A44224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44224_1_lane_dupsFlagged.bam	SRR1423272	@dbgap@:reads/SRP012002/SRS640774/SRX609467/SRR1423272/SRR1423272.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRUL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRUL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUL-01A-01D_TARGET-30-PATRUL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUL-01A-01D_TARGET-30-PATRUL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRUL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUL-10A-01D	DNA	EFO	SRS640623	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUL-10A-01D A44216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44216	SRX609316	"Specific Capture analysis of normal sample TARGET-30-PATRUL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUL-10A-01D A44216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44216_1_lane_dupsFlagged.bam	SRR1423227	@dbgap@:reads/SRP012002/SRS640623/SRX609316/SRR1423227/SRR1423227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRUX-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRUX-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUX-09A-01D_TARGET-30-PATRUX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUX-09A-01D_TARGET-30-PATRUX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRUX-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUX-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-09A-01D	DNA	EFO	SRS640737	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-09A-01D A44225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44225	SRX609430	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRUX-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-09A-01D A44225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44225_1_lane_dupsFlagged.bam	SRR1423349	@dbgap@:reads/SRP012002/SRS640737/SRX609430/SRR1423349/SRR1423349.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUX-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRUX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRUX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUX-09A-01D_TARGET-30-PATRUX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRUX-09A-01D_TARGET-30-PATRUX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRUX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRUX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRUX-10A-01D	DNA	EFO	SRS640599	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRUX-10A-01D A44217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44217	SRX609291	"Specific Capture analysis of normal sample TARGET-30-PATRUX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRUX-10A-01D A44217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44217_1_lane_dupsFlagged.bam	SRR1423240	@dbgap@:reads/SRP012002/SRS640599/SRX609291/SRR1423240/SRR1423240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRUX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRXC-01A-01D_TARGET-30-PATRXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRXC-01A-01D_TARGET-30-PATRXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-01A-01D	DNA	EFO	SRS640714	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-01A-01D A44226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44226	SRX609407	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATRXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-01A-01D A44226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44226_1_lane_dupsFlagged.bam	SRR1423312	@dbgap@:reads/SRP012002/SRS640714/SRX609407/SRR1423312/SRR1423312.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATRXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATRXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRXC-01A-01D_TARGET-30-PATRXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATRXC-01A-01D_TARGET-30-PATRXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATRXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATRXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATRXC-10A-01D	DNA	EFO	SRS640584	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATRXC-10A-01D A44218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44218	SRX609276	"Specific Capture analysis of normal sample TARGET-30-PATRXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATRXC-10A-01D A44218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44218_1_lane_dupsFlagged.bam	SRR1423194	@dbgap@:reads/SRP012002/SRS640584/SRX609276/SRR1423194/SRR1423194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATRXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSDR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSDR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSDR-01A-01D_TARGET-30-PATSDR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSDR-01A-01D_TARGET-30-PATSDR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSDR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSDR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-01A-01D	DNA	EFO	SRS640767	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-01A-01D A44227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44227	SRX609460	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSDR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-01A-01D A44227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44227_1_lane_dupsFlagged.bam	SRR1423358	@dbgap@:reads/SRP012002/SRS640767/SRX609460/SRR1423358/SRR1423358.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSDR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSDR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSDR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSDR-01A-01D_TARGET-30-PATSDR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSDR-01A-01D_TARGET-30-PATSDR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSDR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSDR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSDR-10A-01D	DNA	EFO	SRS640610	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSDR-10A-01D A44219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44219	SRX609304	"Specific Capture analysis of normal sample TARGET-30-PATSDR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSDR-10A-01D A44219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44219_1_lane_dupsFlagged.bam	SRR1423166	@dbgap@:reads/SRP012002/SRS640610/SRX609304/SRR1423166/SRR1423166.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSDR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSJV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSJV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSJV-01A-01D_TARGET-30-PATSJV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSJV-01A-01D_TARGET-30-PATSJV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSJV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSJV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-01A-01D	DNA	EFO	SRS640702	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-01A-01D A44228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44228	SRX609394	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSJV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-01A-01D A44228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44228_1_lane_dupsFlagged.bam	SRR1423298	@dbgap@:reads/SRP012002/SRS640702/SRX609394/SRR1423298/SRR1423298.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSJV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSJV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSJV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSJV-01A-01D_TARGET-30-PATSJV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSJV-01A-01D_TARGET-30-PATSJV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSJV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSJV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSJV-10A-01D	DNA	EFO	SRS640723	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSJV-10A-01D A44220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44220	SRX609416	"Specific Capture analysis of normal sample TARGET-30-PATSJV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSJV-10A-01D A44220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44220_1_lane_dupsFlagged.bam	SRR1423265	@dbgap@:reads/SRP012002/SRS640723/SRX609416/SRR1423265/SRR1423265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSJV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSKE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSKE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSKE-01A-01D_TARGET-30-PATSKE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSKE-01A-01D_TARGET-30-PATSKE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSKE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSKE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-01A-01D	DNA	EFO	SRS640708	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-01A-01D A44235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44235	SRX609401	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSKE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-01A-01D A44235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44235_1_lane_dupsFlagged.bam	SRR1423288	@dbgap@:reads/SRP012002/SRS640708/SRX609401/SRR1423288/SRR1423288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSKE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSKE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSKE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSKE-01A-01D_TARGET-30-PATSKE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSKE-01A-01D_TARGET-30-PATSKE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSKE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSKE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSKE-10A-01D	DNA	EFO	SRS640699	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSKE-10A-01D A44229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44229	SRX609393	"Specific Capture analysis of normal sample TARGET-30-PATSKE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSKE-10A-01D A44229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44229_1_lane_dupsFlagged.bam	SRR1423319	@dbgap@:reads/SRP012002/SRS640699/SRX609393/SRR1423319/SRR1423319.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSKE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSPZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSPZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSPZ-01A-01D_TARGET-30-PATSPZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSPZ-01A-01D_TARGET-30-PATSPZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSPZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSPZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-01A-01D	DNA	EFO	SRS640687	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-01A-01D A44236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44236	SRX609381	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-01A-01D A44236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44236_1_lane_dupsFlagged.bam	SRR1423343	@dbgap@:reads/SRP012002/SRS640687/SRX609381/SRR1423343/SRR1423343.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSPZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSPZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSPZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSPZ-01A-01D_TARGET-30-PATSPZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSPZ-01A-01D_TARGET-30-PATSPZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSPZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSPZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSPZ-10A-01D	DNA	EFO	SRS640705	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSPZ-10A-01D A44230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44230	SRX609398	"Specific Capture analysis of normal sample TARGET-30-PATSPZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSPZ-10A-01D A44230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44230_1_lane_dupsFlagged.bam	SRR1423301	@dbgap@:reads/SRP012002/SRS640705/SRX609398/SRR1423301/SRR1423301.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSPZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSRD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSRD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSRD-01A-01D_TARGET-30-PATSRD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSRD-01A-01D_TARGET-30-PATSRD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSRD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSRD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-01A-01D	DNA	EFO	SRS640736	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-01A-01D A44237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44237	SRX609429	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSRD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-01A-01D A44237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44237_1_lane_dupsFlagged.bam	SRR1423262	@dbgap@:reads/SRP012002/SRS640736/SRX609429/SRR1423262/SRR1423262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSRD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSRD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSRD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSRD-01A-01D_TARGET-30-PATSRD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSRD-01A-01D_TARGET-30-PATSRD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSRD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSRD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSRD-10A-01D	DNA	EFO	SRS640715	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSRD-10A-01D A44231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44231	SRX609408	"Specific Capture analysis of normal sample TARGET-30-PATSRD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSRD-10A-01D A44231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44231_1_lane_dupsFlagged.bam	SRR1423357	@dbgap@:reads/SRP012002/SRS640715/SRX609408/SRR1423357/SRR1423357.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSRD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSSA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSSA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSSA-01A-01D_TARGET-30-PATSSA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSSA-01A-01D_TARGET-30-PATSSA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSSA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSSA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-01A-01D	DNA	EFO	SRS640729	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-01A-01D A44238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44238	SRX609422	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-01A-01D A44238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44238_1_lane_dupsFlagged.bam	SRR1423336	@dbgap@:reads/SRP012002/SRS640729/SRX609422/SRR1423336/SRR1423336.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSSA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSSA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSSA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSSA-01A-01D_TARGET-30-PATSSA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSSA-01A-01D_TARGET-30-PATSSA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSSA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSSA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSSA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSSA-10A-01D	DNA	EFO	SRS640773	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSSA-10A-01D A44232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44232	SRX609466	"Specific Capture analysis of normal sample TARGET-30-PATSSA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSSA-10A-01D A44232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44232_1_lane_dupsFlagged.bam	SRR1423305	@dbgap@:reads/SRP012002/SRS640773/SRX609466/SRR1423305/SRR1423305.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSSA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSXC-01A-01D_TARGET-30-PATSXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSXC-01A-01D_TARGET-30-PATSXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-01A-01D	DNA	EFO	SRS640701	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-01A-01D A44239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44239	SRX609395	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATSXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-01A-01D A44239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44239_1_lane_dupsFlagged.bam	SRR1423337	@dbgap@:reads/SRP012002/SRS640701/SRX609395/SRR1423337/SRR1423337.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATSXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATSXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSXC-01A-01D_TARGET-30-PATSXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATSXC-01A-01D_TARGET-30-PATSXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATSXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATSXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATSXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATSXC-10A-01D	DNA	EFO	SRS640734	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATSXC-10A-01D A44233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44233	SRX609427	"Specific Capture analysis of normal sample TARGET-30-PATSXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATSXC-10A-01D A44233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44233_1_lane_dupsFlagged.bam	SRR1423321	@dbgap@:reads/SRP012002/SRS640734/SRX609427/SRR1423321/SRR1423321.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATSXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTDY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTDY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTDY-01A-01D_TARGET-30-PATTDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTDY-01A-01D_TARGET-30-PATTDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTDY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTDY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-01A-01D	DNA	EFO	SRS640733	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-01A-01D A44240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44240	SRX609426	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-01A-01D A44240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44240_1_lane_dupsFlagged.bam	SRR1423339	@dbgap@:reads/SRP012002/SRS640733/SRX609426/SRR1423339/SRR1423339.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTDY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTDY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTDY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTDY-01A-01D_TARGET-30-PATTDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTDY-01A-01D_TARGET-30-PATTDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTDY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTDY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTDY-10A-01D	DNA	EFO	SRS640685	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTDY-10A-01D A44234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44234	SRX609378	"Specific Capture analysis of normal sample TARGET-30-PATTDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-25	TARGET-30-PATTDY-10A-01D A44234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44234_1_lane_dupsFlagged.bam	SRR1423306	@dbgap@:reads/SRP012002/SRS640685/SRX609378/SRR1423306/SRR1423306.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTDY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTEF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTEF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTEF-01A-01D_TARGET-30-PATTEF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTEF-01A-01D_TARGET-30-PATTEF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTEF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTEF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-01A-01D	DNA	EFO	SRS640755	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-01A-01D A44249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44249	SRX609448	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTEF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-01A-01D A44249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44249_1_lane_dupsFlagged.bam	SRR1423331	@dbgap@:reads/SRP012002/SRS640755/SRX609448/SRR1423331/SRR1423331.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTEF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTEF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTEF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTEF-01A-01D_TARGET-30-PATTEF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTEF-01A-01D_TARGET-30-PATTEF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTEF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTEF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTEF-10A-01D	DNA	EFO	SRS640761	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTEF-10A-01D A44241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44241	SRX609454	"Specific Capture analysis of normal sample TARGET-30-PATTEF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTEF-10A-01D A44241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44241_1_lane_dupsFlagged.bam	SRR1423351	@dbgap@:reads/SRP012002/SRS640761/SRX609454/SRR1423351/SRR1423351.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTEF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTFB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTFB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTFB-01A-01D_TARGET-30-PATTFB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTFB-01A-01D_TARGET-30-PATTFB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTFB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTFB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-01A-01D	DNA	EFO	SRS640769	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-01A-01D A44250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44250	SRX609462	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTFB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-01A-01D A44250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44250_1_lane_dupsFlagged.bam	SRR1423332	@dbgap@:reads/SRP012002/SRS640769/SRX609462/SRR1423332/SRR1423332.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTFB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTFB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTFB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTFB-01A-01D_TARGET-30-PATTFB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTFB-01A-01D_TARGET-30-PATTFB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTFB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTFB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTFB-10A-01D	DNA	EFO	SRS640725	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTFB-10A-01D A44242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44242	SRX609418	"Specific Capture analysis of normal sample TARGET-30-PATTFB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTFB-10A-01D A44242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44242_1_lane_dupsFlagged.bam	SRR1423362	@dbgap@:reads/SRP012002/SRS640725/SRX609418/SRR1423362/SRR1423362.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTFB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTHA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTHA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTHA-01A-01D_TARGET-30-PATTHA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTHA-01A-01D_TARGET-30-PATTHA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTHA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTHA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-01A-01D	DNA	EFO	SRS640722	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-01A-01D A44251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44251	SRX609415	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATTHA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-01A-01D A44251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44251_1_lane_dupsFlagged.bam	SRR1423320	@dbgap@:reads/SRP012002/SRS640722/SRX609415/SRR1423320/SRR1423320.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTHA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTHA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTHA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTHA-01A-01D_TARGET-30-PATTHA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTHA-01A-01D_TARGET-30-PATTHA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTHA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTHA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTHA-10A-01D	DNA	EFO	SRS640704	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTHA-10A-01D A44243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44243	SRX609397	"Specific Capture analysis of normal sample TARGET-30-PATTHA-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTHA-10A-01D A44243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44243_1_lane_dupsFlagged.bam	SRR1423299	@dbgap@:reads/SRP012002/SRS640704/SRX609397/SRR1423299/SRR1423299.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTHA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTMM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTMM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTMM-01A-01D_TARGET-30-PATTMM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTMM-01A-01D_TARGET-30-PATTMM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTMM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTMM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-01A-01D	DNA	EFO	SRS640698	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-01A-01D A44252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44252	SRX609391	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTMM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-01A-01D A44252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44252_1_lane_dupsFlagged.bam	SRR1423360	@dbgap@:reads/SRP012002/SRS640698/SRX609391/SRR1423360/SRR1423360.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTMM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTMM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTMM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTMM-01A-01D_TARGET-30-PATTMM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTMM-01A-01D_TARGET-30-PATTMM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTMM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTMM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTMM-10A-01D	DNA	EFO	SRS640743	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTMM-10A-01D A44244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44244	SRX609437	"Specific Capture analysis of normal sample TARGET-30-PATTMM-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATTMM-10A-01D A44244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44244_1_lane_dupsFlagged.bam	SRR1423311	@dbgap@:reads/SRP012002/SRS640743/SRX609437/SRR1423311/SRR1423311.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTMM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTNA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTNA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTNA-01A-01D_TARGET-30-PATTNA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTNA-01A-01D_TARGET-30-PATTNA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTNA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTNA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-01A-01D	DNA	EFO	SRS640713	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-01A-01D A44255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44255	SRX609406	"Specific Capture analysis of Intermixed Ganglioneuroblastoma sample TARGET-30-PATTNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-01A-01D A44255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44255_1_lane_dupsFlagged.bam	SRR1423285	@dbgap@:reads/SRP012002/SRS640713/SRX609406/SRR1423285/SRR1423285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTNA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTNA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTNA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTNA-01A-01D_TARGET-30-PATTNA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTNA-01A-01D_TARGET-30-PATTNA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTNA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTNA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTNA-10A-01D	DNA	EFO	SRS640712	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTNA-10A-01D A44247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44247	SRX609405	"Specific Capture analysis of normal sample TARGET-30-PATTNA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTNA-10A-01D A44247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44247_1_lane_dupsFlagged.bam	SRR1423275	@dbgap@:reads/SRP012002/SRS640712/SRX609405/SRR1423275/SRR1423275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTNA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPC-01A-01D_TARGET-30-PATTPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPC-01A-01D_TARGET-30-PATTPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-01A-01D	DNA	EFO	SRS640693	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-01A-01D A44253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44253	SRX609386	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-01A-01D A44253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44253_1_lane_dupsFlagged.bam	SRR1423326	@dbgap@:reads/SRP012002/SRS640693/SRX609386/SRR1423326/SRR1423326.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPC-01A-01D_TARGET-30-PATTPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPC-01A-01D_TARGET-30-PATTPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPC-10A-01D	DNA	EFO	SRS640669	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPC-10A-01D A44245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44245	SRX609363	"Specific Capture analysis of normal sample TARGET-30-PATTPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPC-10A-01D A44245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44245_1_lane_dupsFlagged.bam	SRR1423356	@dbgap@:reads/SRP012002/SRS640669/SRX609363/SRR1423356/SRR1423356.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPL-01A-01D_TARGET-30-PATTPL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPL-01A-01D_TARGET-30-PATTPL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-01A-01D	DNA	EFO	SRS640680	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-01A-01D A44254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44254	SRX609374	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-01A-01D A44254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44254_1_lane_dupsFlagged.bam	SRR1423322	@dbgap@:reads/SRP012002/SRS640680/SRX609374/SRR1423322/SRR1423322.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPL-01A-01D_TARGET-30-PATTPL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPL-01A-01D_TARGET-30-PATTPL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPL-10A-01D	DNA	EFO	SRS640724	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPL-10A-01D A44246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44246	SRX609417	"Specific Capture analysis of normal sample TARGET-30-PATTPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPL-10A-01D A44246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44246_1_lane_dupsFlagged.bam	SRR1423276	@dbgap@:reads/SRP012002/SRS640724/SRX609417/SRR1423276/SRR1423276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPW-01A-01D_TARGET-30-PATTPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPW-01A-01D_TARGET-30-PATTPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-01A-01D	DNA	EFO	SRS640746	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-01A-01D A44256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44256	SRX609439	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATTPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-01A-01D A44256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44256_1_lane_dupsFlagged.bam	SRR1423353	@dbgap@:reads/SRP012002/SRS640746/SRX609439/SRR1423353/SRR1423353.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATTPW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATTPW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPW-01A-01D_TARGET-30-PATTPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATTPW-01A-01D_TARGET-30-PATTPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATTPW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATTPW-10A-01D	DNA	EFO	SRS640683	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATTPW-10A-01D A44248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44248	SRX609376	"Specific Capture analysis of normal sample TARGET-30-PATTPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATTPW-10A-01D A44248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44248_1_lane_dupsFlagged.bam	SRR1423277	@dbgap@:reads/SRP012002/SRS640683/SRX609376/SRR1423277/SRR1423277.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATTPW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUEH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUEH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUEH-01A-01D_TARGET-30-PATUEH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUEH-01A-01D_TARGET-30-PATUEH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUEH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUEH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-01A-01D	DNA	EFO	SRS640717	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-01A-01D A44265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44265	SRX609410	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUEH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-01A-01D A44265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44265_1_lane_dupsFlagged.bam	SRR1423313	@dbgap@:reads/SRP012002/SRS640717/SRX609410/SRR1423313/SRR1423313.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUEH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUEH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUEH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUEH-01A-01D_TARGET-30-PATUEH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUEH-01A-01D_TARGET-30-PATUEH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUEH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUEH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUEH-10A-01D	DNA	EFO	SRS640679	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUEH-10A-01D A44257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44257	SRX609372	"Specific Capture analysis of normal sample TARGET-30-PATUEH-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUEH-10A-01D A44257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44257_1_lane_dupsFlagged.bam	SRR1423365	@dbgap@:reads/SRP012002/SRS640679/SRX609372/SRR1423365/SRR1423365.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUEH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNK-01A-01D_TARGET-30-PATUNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNK-01A-01D_TARGET-30-PATUNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-01A-01D	DNA	EFO	SRS640731	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-01A-01D A44266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44266	SRX609424	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-01A-01D A44266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44266_1_lane_dupsFlagged.bam	SRR1423344	@dbgap@:reads/SRP012002/SRS640731/SRX609424/SRR1423344/SRR1423344.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNK-01A-01D_TARGET-30-PATUNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNK-01A-01D_TARGET-30-PATUNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNK-10A-01D	DNA	EFO	SRS640754	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNK-10A-01D A44258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44258	SRX609447	"Specific Capture analysis of normal sample TARGET-30-PATUNK-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNK-10A-01D A44258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44258_1_lane_dupsFlagged.bam	SRR1423346	@dbgap@:reads/SRP012002/SRS640754/SRX609447/SRR1423346/SRR1423346.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNX-01A-01D_TARGET-30-PATUNX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNX-01A-01D_TARGET-30-PATUNX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-01A-01D	DNA	EFO	SRS640957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-01A-01D A44486 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44486	SRX609650	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-01A-01D A44486 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44486_1_lane_dupsFlagged.bam	SRR1423470	@dbgap@:reads/SRP012002/SRS640957/SRX609650/SRR1423470/SRR1423470.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNX-01A-01D_TARGET-30-PATUNX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNX-01A-01D_TARGET-30-PATUNX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNX-10A-01D	DNA	EFO	SRS640881	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNX-10A-01D A44478 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44478	SRX609574	"Specific Capture analysis of normal sample TARGET-30-PATUNX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATUNX-10A-01D A44478 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44478_1_lane_dupsFlagged.bam	SRR1423484	@dbgap@:reads/SRP012002/SRS640881/SRX609574/SRR1423484/SRR1423484.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNZ-01A-01D_TARGET-30-PATUNZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNZ-01A-01D_TARGET-30-PATUNZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-01A-01D	DNA	EFO	SRS640762	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-01A-01D A44267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44267	SRX609455	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUNZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-01A-01D A44267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44267_1_lane_dupsFlagged.bam	SRR1423333	@dbgap@:reads/SRP012002/SRS640762/SRX609455/SRR1423333/SRR1423333.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUNZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUNZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNZ-01A-01D_TARGET-30-PATUNZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUNZ-01A-01D_TARGET-30-PATUNZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUNZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUNZ-10A-01D	DNA	EFO	SRS640703	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUNZ-10A-01D A44259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44259	SRX609396	"Specific Capture analysis of normal sample TARGET-30-PATUNZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUNZ-10A-01D A44259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44259_1_lane_dupsFlagged.bam	SRR1423295	@dbgap@:reads/SRP012002/SRS640703/SRX609396/SRR1423295/SRR1423295.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUNZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUPR-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUPR-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUPR-09A-01D_TARGET-30-PATUPR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUPR-09A-01D_TARGET-30-PATUPR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUPR-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUPR-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-09A-01D	DNA	EFO	SRS640747	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-09A-01D A44268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44268	SRX609440	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUPR-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-09A-01D A44268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44268_1_lane_dupsFlagged.bam	SRR1423361	@dbgap@:reads/SRP012002/SRS640747/SRX609440/SRR1423361/SRR1423361.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUPR-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUPR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUPR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUPR-09A-01D_TARGET-30-PATUPR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUPR-09A-01D_TARGET-30-PATUPR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUPR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUPR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUPR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUPR-10A-01D	DNA	EFO	SRS640676	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUPR-10A-01D A44260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44260	SRX609369	"Specific Capture analysis of normal sample TARGET-30-PATUPR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATUPR-10A-01D A44260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44260_1_lane_dupsFlagged.bam	SRR1423266	@dbgap@:reads/SRP012002/SRS640676/SRX609369/SRR1423266/SRR1423266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUPR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUVB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUVB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUVB-01A-01D_TARGET-30-PATUVB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUVB-01A-01D_TARGET-30-PATUVB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUVB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUVB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-01A-01D	DNA	EFO	SRS640719	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-01A-01D A44269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44269	SRX609412	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-01A-01D A44269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44269_1_lane_dupsFlagged.bam	SRR1423363	@dbgap@:reads/SRP012002/SRS640719/SRX609412/SRR1423363/SRR1423363.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUVB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUVB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUVB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUVB-01A-01D_TARGET-30-PATUVB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUVB-01A-01D_TARGET-30-PATUVB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUVB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUVB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUVB-10A-01D	DNA	EFO	SRS640726	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUVB-10A-01D A44261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44261	SRX609419	"Specific Capture analysis of normal sample TARGET-30-PATUVB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUVB-10A-01D A44261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44261_1_lane_dupsFlagged.bam	SRR1423292	@dbgap@:reads/SRP012002/SRS640726/SRX609419/SRR1423292/SRR1423292.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUVB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUWG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUWG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUWG-01A-01D_TARGET-30-PATUWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUWG-01A-01D_TARGET-30-PATUWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUWG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUWG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-01A-01D	DNA	EFO	SRS640721	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-01A-01D A44270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44270	SRX609414	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-01A-01D A44270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44270_1_lane_dupsFlagged.bam	SRR1423318	@dbgap@:reads/SRP012002/SRS640721/SRX609414/SRR1423318/SRR1423318.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUWG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUWG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUWG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUWG-01A-01D_TARGET-30-PATUWG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUWG-01A-01D_TARGET-30-PATUWG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUWG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUWG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUWG-10A-01D	DNA	EFO	SRS640750	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUWG-10A-01D A44262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44262	SRX609443	"Specific Capture analysis of normal sample TARGET-30-PATUWG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATUWG-10A-01D A44262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44262_1_lane_dupsFlagged.bam	SRR1423289	@dbgap@:reads/SRP012002/SRS640750/SRX609443/SRR1423289/SRR1423289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUWG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUZF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUZF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUZF-01A-01D_TARGET-30-PATUZF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUZF-01A-01D_TARGET-30-PATUZF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUZF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUZF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-01A-01D	DNA	EFO	SRS640936	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-01A-01D A44820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44820	SRX609629	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATUZF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-01A-01D A44820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44820_1_lane_dupsFlagged.bam	SRR1423569	@dbgap@:reads/SRP012002/SRS640936/SRX609629/SRR1423569/SRR1423569.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUZF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATUZF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATUZF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUZF-01A-01D_TARGET-30-PATUZF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATUZF-01A-01D_TARGET-30-PATUZF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATUZF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUZF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATUZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATUZF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATUZF-10A-01D	DNA	EFO	SRS640947	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATUZF-10A-01D A44812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44812	SRX609640	"Specific Capture analysis of normal sample TARGET-30-PATUZF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PATUZF-10A-01D A44812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44812_1_lane_dupsFlagged.bam	SRR1423566	@dbgap@:reads/SRP012002/SRS640947/SRX609640/SRR1423566/SRR1423566.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATUZF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDI-01A-01D_TARGET-30-PATVDI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDI-01A-01D_TARGET-30-PATVDI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-01A-01D	DNA	EFO	SRS640730	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-01A-01D A44271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44271	SRX609423	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-01A-01D A44271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44271_1_lane_dupsFlagged.bam	SRR1423290	@dbgap@:reads/SRP012002/SRS640730/SRX609423/SRR1423290/SRR1423290.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDI-01A-01D_TARGET-30-PATVDI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDI-01A-01D_TARGET-30-PATVDI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDI-10A-01D	DNA	EFO	SRS640690	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDI-10A-01D A44263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44263	SRX609383	"Specific Capture analysis of normal sample TARGET-30-PATVDI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDI-10A-01D A44263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44263_1_lane_dupsFlagged.bam	SRR1423264	@dbgap@:reads/SRP012002/SRS640690/SRX609383/SRR1423264/SRR1423264.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDP-01A-01D_TARGET-30-PATVDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDP-01A-01D_TARGET-30-PATVDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-01A-01D	DNA	EFO	SRS640672	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-01A-01D A44272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44272	SRX609365	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-01A-01D A44272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44272_1_lane_dupsFlagged.bam	SRR1423310	@dbgap@:reads/SRP012002/SRS640672/SRX609365/SRR1423310/SRR1423310.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDP-01A-01D_TARGET-30-PATVDP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDP-01A-01D_TARGET-30-PATVDP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDP-10A-01D	DNA	EFO	SRS640678	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDP-10A-01D A44264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44264	SRX609371	"Specific Capture analysis of normal sample TARGET-30-PATVDP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVDP-10A-01D A44264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44264_1_lane_dupsFlagged.bam	SRR1423291	@dbgap@:reads/SRP012002/SRS640678/SRX609371/SRR1423291/SRR1423291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDY-09A-01D_TARGET-30-PATVDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDY-09A-01D_TARGET-30-PATVDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDY-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDY-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-09A-01D	DNA	EFO	SRS640758	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-09A-01D A44281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44281	SRX609451	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVDY-09A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-09A-01D A44281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44281_1_lane_dupsFlagged.bam	SRR1423274	@dbgap@:reads/SRP012002/SRS640758/SRX609451/SRR1423274/SRR1423274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDY-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVDY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVDY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDY-09A-01D_TARGET-30-PATVDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVDY-09A-01D_TARGET-30-PATVDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVDY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVDY-10A-01D	DNA	EFO	SRS640707	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVDY-10A-01D A44273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44273	SRX609400	"Specific Capture analysis of normal sample TARGET-30-PATVDY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVDY-10A-01D A44273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44273_1_lane_dupsFlagged.bam	SRR1423364	@dbgap@:reads/SRP012002/SRS640707/SRX609400/SRR1423364/SRR1423364.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVDY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVJX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVJX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVJX-01A-01D_TARGET-30-PATVJX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVJX-01A-01D_TARGET-30-PATVJX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVJX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVJX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-01A-01D	DNA	EFO	SRS640771	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-01A-01D A44282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44282	SRX609464	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVJX-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-01A-01D A44282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44282_1_lane_dupsFlagged.bam	SRR1423304	@dbgap@:reads/SRP012002/SRS640771/SRX609464/SRR1423304/SRR1423304.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVJX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVJX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVJX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVJX-01A-01D_TARGET-30-PATVJX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVJX-01A-01D_TARGET-30-PATVJX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVJX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVJX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVJX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVJX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVJX-10A-01D	DNA	EFO	SRS640682	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVJX-10A-01D A44274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44274	SRX609375	"Specific Capture analysis of normal sample TARGET-30-PATVJX-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVJX-10A-01D A44274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44274_1_lane_dupsFlagged.bam	SRR1423354	@dbgap@:reads/SRP012002/SRS640682/SRX609375/SRR1423354/SRR1423354.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVJX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVMF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVMF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVMF-01A-01D_TARGET-30-PATVMF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVMF-01A-01D_TARGET-30-PATVMF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVMF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVMF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-01A-01D	DNA	EFO	SRS640673	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-01A-01D A44283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44283	SRX609366	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVMF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-01A-01D A44283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44283_1_lane_dupsFlagged.bam	SRR1423350	@dbgap@:reads/SRP012002/SRS640673/SRX609366/SRR1423350/SRR1423350.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVMF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVMF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVMF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVMF-01A-01D_TARGET-30-PATVMF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVMF-01A-01D_TARGET-30-PATVMF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVMF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVMF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVMF-10A-01D	DNA	EFO	SRS640752	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVMF-10A-01D A44275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44275	SRX609445	"Specific Capture analysis of normal sample TARGET-30-PATVMF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVMF-10A-01D A44275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44275_1_lane_dupsFlagged.bam	SRR1423328	@dbgap@:reads/SRP012002/SRS640752/SRX609445/SRR1423328/SRR1423328.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVMF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVNW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVNW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVNW-01A-01D_TARGET-30-PATVNW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVNW-01A-01D_TARGET-30-PATVNW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVNW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVNW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-01A-01D	DNA	EFO	SRS640697	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-01A-01D A44284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44284	SRX609390	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVNW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-01A-01D A44284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44284_1_lane_dupsFlagged.bam	SRR1423309	@dbgap@:reads/SRP012002/SRS640697/SRX609390/SRR1423309/SRR1423309.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVNW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVNW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVNW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVNW-01A-01D_TARGET-30-PATVNW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVNW-01A-01D_TARGET-30-PATVNW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVNW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVNW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVNW-10A-01D	DNA	EFO	SRS640681	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVNW-10A-01D A44276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44276	SRX609373	"Specific Capture analysis of normal sample TARGET-30-PATVNW-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVNW-10A-01D A44276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44276_1_lane_dupsFlagged.bam	SRR1423283	@dbgap@:reads/SRP012002/SRS640681/SRX609373/SRR1423283/SRR1423283.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVNW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVSU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVSU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVSU-01A-01D_TARGET-30-PATVSU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVSU-01A-01D_TARGET-30-PATVSU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVSU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVSU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-01A-01D	DNA	EFO	SRS640775	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-01A-01D A44285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44285	SRX609468	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVSU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-01A-01D A44285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44285_1_lane_dupsFlagged.bam	SRR1423359	@dbgap@:reads/SRP012002/SRS640775/SRX609468/SRR1423359/SRR1423359.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVSU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVSU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVSU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVSU-01A-01D_TARGET-30-PATVSU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVSU-01A-01D_TARGET-30-PATVSU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVSU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVSU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVSU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVSU-10A-01D	DNA	EFO	SRS640738	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVSU-10A-01D A44277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44277	SRX609431	"Specific Capture analysis of normal sample TARGET-30-PATVSU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVSU-10A-01D A44277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44277_1_lane_dupsFlagged.bam	SRR1423269	@dbgap@:reads/SRP012002/SRS640738/SRX609431/SRR1423269/SRR1423269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVSU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVTL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVTL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVTL-01A-01D_TARGET-30-PATVTL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVTL-01A-01D_TARGET-30-PATVTL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVTL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVTL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-01A-01D	DNA	EFO	SRS640691	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-01A-01D A44286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44286	SRX609384	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-01A-01D A44286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44286_1_lane_dupsFlagged.bam	SRR1423281	@dbgap@:reads/SRP012002/SRS640691/SRX609384/SRR1423281/SRR1423281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVTL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVTL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVTL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVTL-01A-01D_TARGET-30-PATVTL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVTL-01A-01D_TARGET-30-PATVTL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVTL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVTL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVTL-10A-01D	DNA	EFO	SRS640763	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVTL-10A-01D A44278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44278	SRX609456	"Specific Capture analysis of normal sample TARGET-30-PATVTL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVTL-10A-01D A44278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44278_1_lane_dupsFlagged.bam	SRR1423329	@dbgap@:reads/SRP012002/SRS640763/SRX609456/SRR1423329/SRR1423329.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVTL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVWA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVWA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVWA-01A-01D_TARGET-30-PATVWA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVWA-01A-01D_TARGET-30-PATVWA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVWA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVWA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-01A-01D	DNA	EFO	SRS640744	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-01A-01D A44287 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44287	SRX609436	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-01A-01D A44287 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44287_1_lane_dupsFlagged.bam	SRR1423280	@dbgap@:reads/SRP012002/SRS640744/SRX609436/SRR1423280/SRR1423280.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVWA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVWA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVWA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVWA-01A-01D_TARGET-30-PATVWA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVWA-01A-01D_TARGET-30-PATVWA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVWA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVWA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVWA-10A-01D	DNA	EFO	SRS640675	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVWA-10A-01D A44279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44279	SRX609368	"Specific Capture analysis of normal sample TARGET-30-PATVWA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVWA-10A-01D A44279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44279_1_lane_dupsFlagged.bam	SRR1423303	@dbgap@:reads/SRP012002/SRS640675/SRX609368/SRR1423303/SRR1423303.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVWA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVYZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVYZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVYZ-01A-01D_TARGET-30-PATVYZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVYZ-01A-01D_TARGET-30-PATVYZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVYZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVYZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-01A-01D	DNA	EFO	SRS640686	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-01A-01D A44288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44288	SRX609379	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATVYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-01A-01D A44288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44288_1_lane_dupsFlagged.bam	SRR1423340	@dbgap@:reads/SRP012002/SRS640686/SRX609379/SRR1423340/SRR1423340.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVYZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVYZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVYZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVYZ-01A-01D_TARGET-30-PATVYZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVYZ-01A-01D_TARGET-30-PATVYZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVYZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVYZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVYZ-10A-01D	DNA	EFO	SRS640766	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVYZ-10A-01D A44280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44280	SRX609458	"Specific Capture analysis of normal sample TARGET-30-PATVYZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATVYZ-10A-01D A44280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44280_1_lane_dupsFlagged.bam	SRR1423342	@dbgap@:reads/SRP012002/SRS640766/SRX609458/SRR1423342/SRR1423342.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVYZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVZB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVZB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVZB-01A-01D_TARGET-30-PATVZB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVZB-01A-01D_TARGET-30-PATVZB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVZB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVZB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-01A-01D	DNA	EFO	SRS640759	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-01A-01D A44297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44297	SRX609452	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATVZB-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-01A-01D A44297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44297_1_lane_dupsFlagged.bam	SRR1423335	@dbgap@:reads/SRP012002/SRS640759/SRX609452/SRR1423335/SRR1423335.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVZB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATVZB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATVZB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVZB-01A-01D_TARGET-30-PATVZB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATVZB-01A-01D_TARGET-30-PATVZB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATVZB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVZB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATVZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATVZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATVZB-10A-01D	DNA	EFO	SRS640735	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATVZB-10A-01D A44289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44289	SRX609428	"Specific Capture analysis of normal sample TARGET-30-PATVZB-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATVZB-10A-01D A44289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44289_1_lane_dupsFlagged.bam	SRR1423267	@dbgap@:reads/SRP012002/SRS640735/SRX609428/SRR1423267/SRR1423267.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATVZB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWED-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWED-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWED-01A-01D_TARGET-30-PATWED-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWED-01A-01D_TARGET-30-PATWED-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWED-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWED-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-01A-01D	DNA	EFO	SRS640684	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-01A-01D A44298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44298	SRX609377	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-01A-01D A44298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44298_1_lane_dupsFlagged.bam	SRR1423348	@dbgap@:reads/SRP012002/SRS640684/SRX609377/SRR1423348/SRR1423348.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWED-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWED-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWED-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWED-01A-01D_TARGET-30-PATWED-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWED-01A-01D_TARGET-30-PATWED-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWED-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWED-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWED-10A-01D	DNA	EFO	SRS640772	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWED-10A-01D A44290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44290	SRX609465	"Specific Capture analysis of normal sample TARGET-30-PATWED-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWED-10A-01D A44290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44290_1_lane_dupsFlagged.bam	SRR1423268	@dbgap@:reads/SRP012002/SRS640772/SRX609465/SRR1423268/SRR1423268.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWED-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWGC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWGC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGC-01A-01D_TARGET-30-PATWGC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGC-01A-01D_TARGET-30-PATWGC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWGC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-01A-01D	DNA	EFO	SRS640645	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-01A-01D A44131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44131	SRX609338	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-01A-01D A44131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44131_1_lane_dupsFlagged.bam	SRR1423214	@dbgap@:reads/SRP012002/SRS640645/SRX609338/SRR1423214/SRR1423214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWGC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWGC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGC-01A-01D_TARGET-30-PATWGC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGC-01A-01D_TARGET-30-PATWGC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWGC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGC-10A-01D	DNA	EFO	SRS640655	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGC-10A-01D A44123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44123	SRX609348	"Specific Capture analysis of normal sample TARGET-30-PATWGC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-30-PATWGC-10A-01D A44123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44123_1_lane_dupsFlagged.bam	SRR1423185	@dbgap@:reads/SRP012002/SRS640655/SRX609348/SRR1423185/SRR1423185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWGR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWGR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGR-01A-01D_TARGET-30-PATWGR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGR-01A-01D_TARGET-30-PATWGR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWGR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-01A-01D	DNA	EFO	SRS640706	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-01A-01D A44299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44299	SRX609399	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWGR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-01A-01D A44299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44299_1_lane_dupsFlagged.bam	SRR1423273	@dbgap@:reads/SRP012002/SRS640706/SRX609399/SRR1423273/SRR1423273.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWGR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWGR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGR-01A-01D_TARGET-30-PATWGR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWGR-01A-01D_TARGET-30-PATWGR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWGR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWGR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWGR-10A-01D	DNA	EFO	SRS640692	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWGR-10A-01D A44291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44291	SRX609385	"Specific Capture analysis of normal sample TARGET-30-PATWGR-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWGR-10A-01D A44291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44291_1_lane_dupsFlagged.bam	SRR1423323	@dbgap@:reads/SRP012002/SRS640692/SRX609385/SRR1423323/SRR1423323.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWGR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWIL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWIL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWIL-01A-01D_TARGET-30-PATWIL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWIL-01A-01D_TARGET-30-PATWIL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWIL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWIL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-01A-01D	DNA	EFO	SRS640768	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-01A-01D A44300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44300	SRX609461	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWIL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-01A-01D A44300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44300_1_lane_dupsFlagged.bam	SRR1423307	@dbgap@:reads/SRP012002/SRS640768/SRX609461/SRR1423307/SRR1423307.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWIL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWIL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWIL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWIL-01A-01D_TARGET-30-PATWIL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWIL-01A-01D_TARGET-30-PATWIL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWIL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWIL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWIL-10A-01D	DNA	EFO	SRS640739	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWIL-10A-01D A44292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44292	SRX609433	"Specific Capture analysis of normal sample TARGET-30-PATWIL-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWIL-10A-01D A44292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44292_1_lane_dupsFlagged.bam	SRR1423355	@dbgap@:reads/SRP012002/SRS640739/SRX609433/SRR1423355/SRR1423355.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWIL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWMX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWMX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWMX-01A-01D_TARGET-30-PATWMX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWMX-01A-01D_TARGET-30-PATWMX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWMX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWMX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-01A-01D	DNA	EFO	SRS640764	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-01A-01D A44301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44301	SRX609457	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWMX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-01A-01D A44301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44301_1_lane_dupsFlagged.bam	SRR1423334	@dbgap@:reads/SRP012002/SRS640764/SRX609457/SRR1423334/SRR1423334.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWMX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWMX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWMX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWMX-01A-01D_TARGET-30-PATWMX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWMX-01A-01D_TARGET-30-PATWMX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWMX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWMX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWMX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWMX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWMX-10A-01D	DNA	EFO	SRS640756	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWMX-10A-01D A44293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44293	SRX609449	"Specific Capture analysis of normal sample TARGET-30-PATWMX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWMX-10A-01D A44293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44293_1_lane_dupsFlagged.bam	SRR1423366	@dbgap@:reads/SRP012002/SRS640756/SRX609449/SRR1423366/SRR1423366.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWMX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWNB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWNB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWNB-01A-01D_TARGET-30-PATWNB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWNB-01A-01D_TARGET-30-PATWNB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWNB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWNB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-01A-01D	DNA	EFO	SRS640711	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-01A-01D A44302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44302	SRX609404	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWNB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-01A-01D A44302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44302_1_lane_dupsFlagged.bam	SRR1423287	@dbgap@:reads/SRP012002/SRS640711/SRX609404/SRR1423287/SRR1423287.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWNB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWNB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWNB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWNB-01A-01D_TARGET-30-PATWNB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWNB-01A-01D_TARGET-30-PATWNB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWNB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWNB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWNB-10A-01D	DNA	EFO	SRS640765	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWNB-10A-01D A44294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44294	SRX609459	"Specific Capture analysis of normal sample TARGET-30-PATWNB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWNB-10A-01D A44294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44294_1_lane_dupsFlagged.bam	SRR1423347	@dbgap@:reads/SRP012002/SRS640765/SRX609459/SRR1423347/SRR1423347.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWNB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWTW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWTW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWTW-01A-01D_TARGET-30-PATWTW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWTW-01A-01D_TARGET-30-PATWTW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWTW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWTW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-01A-01D	DNA	EFO	SRS640696	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-01A-01D A44303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44303	SRX609389	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWTW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-01A-01D A44303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44303_1_lane_dupsFlagged.bam	SRR1423279	@dbgap@:reads/SRP012002/SRS640696/SRX609389/SRR1423279/SRR1423279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWTW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWTW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWTW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWTW-01A-01D_TARGET-30-PATWTW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWTW-01A-01D_TARGET-30-PATWTW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWTW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWTW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWTW-10A-01D	DNA	EFO	SRS640751	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWTW-10A-01D A44295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44295	SRX609444	"Specific Capture analysis of normal sample TARGET-30-PATWTW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWTW-10A-01D A44295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44295_1_lane_dupsFlagged.bam	SRR1423324	@dbgap@:reads/SRP012002/SRS640751/SRX609444/SRR1423324/SRR1423324.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWTW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWWJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWWJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWWJ-01A-01D_TARGET-30-PATWWJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWWJ-01A-01D_TARGET-30-PATWWJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWWJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWWJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-01A-01D	DNA	EFO	SRS640718	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-01A-01D A44304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44304	SRX609411	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-01A-01D A44304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44304_1_lane_dupsFlagged.bam	SRR1423338	@dbgap@:reads/SRP012002/SRS640718/SRX609411/SRR1423338/SRR1423338.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWWJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWWJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWWJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWWJ-01A-01D_TARGET-30-PATWWJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWWJ-01A-01D_TARGET-30-PATWWJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWWJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWWJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWWJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWWJ-10A-01D	DNA	EFO	SRS640709	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWWJ-10A-01D A44296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44296	SRX609402	"Specific Capture analysis of normal sample TARGET-30-PATWWJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATWWJ-10A-01D A44296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44296_1_lane_dupsFlagged.bam	SRR1423284	@dbgap@:reads/SRP012002/SRS640709/SRX609402/SRR1423284/SRR1423284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWWJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWZB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWZB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZB-01A-01D_TARGET-30-PATWZB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZB-01A-01D_TARGET-30-PATWZB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWZB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-01A-01D	DNA	EFO	SRS641018	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-01A-01D A44978 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44978	SRX609936	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-01A-01D A44978 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44978_1_lane_dupsFlagged.bam	SRR1424255	@dbgap@:reads/SRP012002/SRS641018/SRX609936/SRR1424255/SRR1424255.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWZB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWZB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZB-01A-01D_TARGET-30-PATWZB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZB-01A-01D_TARGET-30-PATWZB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWZB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZB-10A-01D	DNA	EFO	SRS641042	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZB-10A-01D A44970 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44970	SRX609960	"Specific Capture analysis of normal sample TARGET-30-PATWZB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PATWZB-10A-01D A44970 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44970_1_lane_dupsFlagged.bam	SRR1424205	@dbgap@:reads/SRP012002/SRS641042/SRX609960/SRR1424205/SRR1424205.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWZZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWZZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZZ-01A-01D_TARGET-30-PATWZZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZZ-01A-01D_TARGET-30-PATWZZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWZZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-01A-01D	DNA	EFO	SRS640753	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-01A-01D A44313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44313	SRX609446	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATWZZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-01A-01D A44313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44313_1_lane_dupsFlagged.bam	SRR1423345	@dbgap@:reads/SRP012002/SRS640753/SRX609446/SRR1423345/SRR1423345.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATWZZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATWZZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZZ-01A-01D_TARGET-30-PATWZZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATWZZ-01A-01D_TARGET-30-PATWZZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATWZZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATWZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATWZZ-10A-01D	DNA	EFO	SRS640732	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATWZZ-10A-01D A44305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44305	SRX609425	"Specific Capture analysis of normal sample TARGET-30-PATWZZ-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATWZZ-10A-01D A44305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44305_1_lane_dupsFlagged.bam	SRR1423330	@dbgap@:reads/SRP012002/SRS640732/SRX609425/SRR1423330/SRR1423330.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATWZZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXDV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXDV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXDV-01A-01D_TARGET-30-PATXDV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXDV-01A-01D_TARGET-30-PATXDV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXDV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXDV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-01A-01D	DNA	EFO	SRS640760	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-01A-01D A44314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44314	SRX609453	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXDV-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-01A-01D A44314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44314_1_lane_dupsFlagged.bam	SRR1423282	@dbgap@:reads/SRP012002/SRS640760/SRX609453/SRR1423282/SRR1423282.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXDV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXDV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXDV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXDV-01A-01D_TARGET-30-PATXDV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXDV-01A-01D_TARGET-30-PATXDV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXDV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXDV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXDV-10A-01D	DNA	EFO	SRS640745	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXDV-10A-01D A44306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44306	SRX609438	"Specific Capture analysis of normal sample TARGET-30-PATXDV-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXDV-10A-01D A44306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44306_1_lane_dupsFlagged.bam	SRR1423367	@dbgap@:reads/SRP012002/SRS640745/SRX609438/SRR1423367/SRR1423367.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXDV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHC-01A-01D_TARGET-30-PATXHC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHC-01A-01D_TARGET-30-PATXHC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-01A-01D	DNA	EFO	SRS640749	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-01A-01D A44315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44315	SRX609442	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHC-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-01A-01D A44315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44315_1_lane_dupsFlagged.bam	SRR1423294	@dbgap@:reads/SRP012002/SRS640749/SRX609442/SRR1423294/SRR1423294.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHC-01A-01D_TARGET-30-PATXHC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHC-01A-01D_TARGET-30-PATXHC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHC-10A-01D	DNA	EFO	SRS640757	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHC-10A-01D A44307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44307	SRX609450	"Specific Capture analysis of normal sample TARGET-30-PATXHC-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHC-10A-01D A44307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44307_1_lane_dupsFlagged.bam	SRR1423352	@dbgap@:reads/SRP012002/SRS640757/SRX609450/SRR1423352/SRR1423352.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHT-01A-01D_TARGET-30-PATXHT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHT-01A-01D_TARGET-30-PATXHT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-01A-01D	DNA	EFO	SRS640728	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-01A-01D A44316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44316	SRX609421	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXHT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-01A-01D A44316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44316_1_lane_dupsFlagged.bam	SRR1423314	@dbgap@:reads/SRP012002/SRS640728/SRX609421/SRR1423314/SRR1423314.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHT-01A-01D_TARGET-30-PATXHT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHT-01A-01D_TARGET-30-PATXHT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHT-10A-01D	DNA	EFO	SRS640695	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHT-10A-01D A44308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44308	SRX609388	"Specific Capture analysis of normal sample TARGET-30-PATXHT-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXHT-10A-01D A44308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44308_1_lane_dupsFlagged.bam	SRR1423341	@dbgap@:reads/SRP012002/SRS640695/SRX609388/SRR1423341/SRR1423341.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHW-01A-01D_TARGET-30-PATXHW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHW-01A-01D_TARGET-30-PATXHW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-01A-01D	DNA	EFO	SRS640689	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-01A-01D A44317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44317	SRX609382	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PATXHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-01A-01D A44317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44317_1_lane_dupsFlagged.bam	SRR1423263	@dbgap@:reads/SRP012002/SRS640689/SRX609382/SRR1423263/SRR1423263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXHW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXHW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHW-01A-01D_TARGET-30-PATXHW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXHW-01A-01D_TARGET-30-PATXHW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXHW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXHW-10A-01D	DNA	EFO	SRS640727	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXHW-10A-01D A44309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44309	SRX609420	"Specific Capture analysis of normal sample TARGET-30-PATXHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXHW-10A-01D A44309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44309_1_lane_dupsFlagged.bam	SRR1423278	@dbgap@:reads/SRP012002/SRS640727/SRX609420/SRR1423278/SRR1423278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXHW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXKG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXKG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXKG-01A-01D_TARGET-30-PATXKG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXKG-01A-01D_TARGET-30-PATXKG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXKG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXKG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-01A-01D	DNA	EFO	SRS640716	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-01A-01D A44318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44318	SRX609409	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXKG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-01A-01D A44318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44318_1_lane_dupsFlagged.bam	SRR1423315	@dbgap@:reads/SRP012002/SRS640716/SRX609409/SRR1423315/SRR1423315.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXKG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXKG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXKG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXKG-01A-01D_TARGET-30-PATXKG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXKG-01A-01D_TARGET-30-PATXKG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXKG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXKG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXKG-10A-01D	DNA	EFO	SRS640720	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXKG-10A-01D A44310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44310	SRX609413	"Specific Capture analysis of normal sample TARGET-30-PATXKG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXKG-10A-01D A44310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44310_1_lane_dupsFlagged.bam	SRR1423308	@dbgap@:reads/SRP012002/SRS640720/SRX609413/SRR1423308/SRR1423308.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXKG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXTF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXTF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXTF-01A-01D_TARGET-30-PATXTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXTF-01A-01D_TARGET-30-PATXTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXTF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXTF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-01A-01D	DNA	EFO	SRS640677	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-01A-01D A44319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44319	SRX609370	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-01A-01D A44319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44319_1_lane_dupsFlagged.bam	SRR1423302	@dbgap@:reads/SRP012002/SRS640677/SRX609370/SRR1423302/SRR1423302.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXTF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXTF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXTF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXTF-01A-01D_TARGET-30-PATXTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXTF-01A-01D_TARGET-30-PATXTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXTF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXTF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXTF-10A-01D	DNA	EFO	SRS640671	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXTF-10A-01D A44311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44311	SRX609364	"Specific Capture analysis of normal sample TARGET-30-PATXTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXTF-10A-01D A44311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44311_1_lane_dupsFlagged.bam	SRR1423286	@dbgap@:reads/SRP012002/SRS640671/SRX609364/SRR1423286/SRR1423286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXTF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXUG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXUG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXUG-01A-01D_TARGET-30-PATXUG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXUG-01A-01D_TARGET-30-PATXUG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXUG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXUG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-01A-01D	DNA	EFO	SRS640740	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-01A-01D A44320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44320	SRX609432	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXUG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-01A-01D A44320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44320_1_lane_dupsFlagged.bam	SRR1423317	@dbgap@:reads/SRP012002/SRS640740/SRX609432/SRR1423317/SRR1423317.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXUG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXUG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXUG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXUG-01A-01D_TARGET-30-PATXUG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXUG-01A-01D_TARGET-30-PATXUG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXUG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXUG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXUG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXUG-10A-01D	DNA	EFO	SRS640742	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXUG-10A-01D A44312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44312	SRX609435	"Specific Capture analysis of normal sample TARGET-30-PATXUG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXUG-10A-01D A44312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44312_1_lane_dupsFlagged.bam	SRR1423296	@dbgap@:reads/SRP012002/SRS640742/SRX609435/SRR1423296/SRR1423296.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXUG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXWS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXWS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWS-01A-01D_TARGET-30-PATXWS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWS-01A-01D_TARGET-30-PATXWS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXWS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-01A-01D	DNA	EFO	SRS640779	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-01A-01D A44327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44327	SRX609472	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWS-01A-01D A44327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44327_1_lane_dupsFlagged.bam	SRR1423422	@dbgap@:reads/SRP012002/SRS640779/SRX609472/SRR1423422/SRR1423422.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXWS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXWS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWS-01A-01D_TARGET-30-PATXWS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWS-01A-01D_TARGET-30-PATXWS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXWS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWS-10A-01D	DNA	EFO	SRS640741	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWS-10A-01D A44321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44321	SRX609434	"Specific Capture analysis of normal sample TARGET-30-PATXWS-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWS-10A-01D A44321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44321_1_lane_dupsFlagged.bam	SRR1423316	@dbgap@:reads/SRP012002/SRS640741/SRX609434/SRR1423316/SRR1423316.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXWY-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXWY-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWY-09A-01D_TARGET-30-PATXWY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWY-09A-01D_TARGET-30-PATXWY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXWY-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWY-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-09A-01D	DNA	EFO	SRS640803	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-09A-01D A44328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44328	SRX609496	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXWY-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXWY-09A-01D A44328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44328_1_lane_dupsFlagged.bam	SRR1423414	@dbgap@:reads/SRP012002/SRS640803/SRX609496/SRR1423414/SRR1423414.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWY-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXWY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXWY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWY-09A-01D_TARGET-30-PATXWY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXWY-09A-01D_TARGET-30-PATXWY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXWY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXWY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXWY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXWY-10A-01D	DNA	EFO	SRS640694	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXWY-10A-01D A44322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44322	SRX609387	"Specific Capture analysis of normal sample TARGET-30-PATXWY-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXWY-10A-01D A44322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44322_1_lane_dupsFlagged.bam	SRR1423327	@dbgap@:reads/SRP012002/SRS640694/SRX609387/SRR1423327/SRR1423327.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXWY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXXF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXXF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXF-01A-01D_TARGET-30-PATXXF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXF-01A-01D_TARGET-30-PATXXF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXXF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-01A-01D	DNA	EFO	SRS640830	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-01A-01D A44329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44329	SRX609523	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-01A-01D A44329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44329_1_lane_dupsFlagged.bam	SRR1423444	@dbgap@:reads/SRP012002/SRS640830/SRX609523/SRR1423444/SRR1423444.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXXF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXXF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXF-01A-01D_TARGET-30-PATXXF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXF-01A-01D_TARGET-30-PATXXF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXXF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXF-10A-01D	DNA	EFO	SRS640674	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXF-10A-01D A44323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44323	SRX609367	"Specific Capture analysis of normal sample TARGET-30-PATXXF-10A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXF-10A-01D A44323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44323_1_lane_dupsFlagged.bam	SRR1423297	@dbgap@:reads/SRP012002/SRS640674/SRX609367/SRR1423297/SRR1423297.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXXI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXXI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXI-01A-01D_TARGET-30-PATXXI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXI-01A-01D_TARGET-30-PATXXI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXXI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-01A-01D	DNA	EFO	SRS640787	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-01A-01D A44330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44330	SRX609480	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATXXI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATXXI-01A-01D A44330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44330_1_lane_dupsFlagged.bam	SRR1423376	@dbgap@:reads/SRP012002/SRS640787/SRX609480/SRR1423376/SRR1423376.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATXXI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATXXI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXI-01A-01D_TARGET-30-PATXXI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATXXI-01A-01D_TARGET-30-PATXXI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATXXI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATXXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATXXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATXXI-10A-01D	DNA	EFO	SRS640700	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATXXI-10A-01D A44324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44324	SRX609392	"Specific Capture analysis of normal sample TARGET-30-PATXXI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATXXI-10A-01D A44324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44324_1_lane_dupsFlagged.bam	SRR1423271	@dbgap@:reads/SRP012002/SRS640700/SRX609392/SRR1423271/SRR1423271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATXXI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYCM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYCM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYCM-01A-01D_TARGET-30-PATYCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYCM-01A-01D_TARGET-30-PATYCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYCM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYCM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-01A-01D	DNA	EFO	SRS640862	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-01A-01D A44331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44331	SRX609555	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYCM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2500:01	BCCA	2014-03-19	TARGET-30-PATYCM-01A-01D A44331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44331_1_lane_dupsFlagged.bam	SRR1423430	@dbgap@:reads/SRP012002/SRS640862/SRX609555/SRR1423430/SRR1423430.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYCM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYCM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYCM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYCM-01A-01D_TARGET-30-PATYCM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYCM-01A-01D_TARGET-30-PATYCM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYCM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYCM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYCM-10A-01D	DNA	EFO	SRS640688	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYCM-10A-01D A44325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44325	SRX609380	"Specific Capture analysis of normal sample TARGET-30-PATYCM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYCM-10A-01D A44325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44325_1_lane_dupsFlagged.bam	SRR1423270	@dbgap@:reads/SRP012002/SRS640688/SRX609380/SRR1423270/SRR1423270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYCM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYDC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYDC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYDC-01A-01D_TARGET-30-PATYDC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYDC-01A-01D_TARGET-30-PATYDC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYDC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYDC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-01A-01D	DNA	EFO	SRS640863	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-01A-01D A44332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44332	SRX609556	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-01A-01D A44332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44332_1_lane_dupsFlagged.bam	SRR1423462	@dbgap@:reads/SRP012002/SRS640863/SRX609556/SRR1423462/SRR1423462.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYDC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYDC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYDC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYDC-01A-01D_TARGET-30-PATYDC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYDC-01A-01D_TARGET-30-PATYDC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYDC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYDC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYDC-10A-01D	DNA	EFO	SRS640851	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYDC-10A-01D A44326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	300	A44326	SRX609544	"Specific Capture analysis of normal sample TARGET-30-PATYDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-26	TARGET-30-PATYDC-10A-01D A44326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44326_1_lane_dupsFlagged.bam	SRR1423389	@dbgap@:reads/SRP012002/SRS640851/SRX609544/SRR1423389/SRR1423389.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYDC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYEJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYEJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYEJ-01A-01D_TARGET-30-PATYEJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYEJ-01A-01D_TARGET-30-PATYEJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYEJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYEJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-01A-01D	DNA	EFO	SRS640786	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-01A-01D A44341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44341	SRX609479	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-01A-01D A44341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44341_1_lane_dupsFlagged.bam	SRR1423447	@dbgap@:reads/SRP012002/SRS640786/SRX609479/SRR1423447/SRR1423447.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYEJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYEJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYEJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYEJ-01A-01D_TARGET-30-PATYEJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYEJ-01A-01D_TARGET-30-PATYEJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYEJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYEJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYEJ-10A-01D	DNA	EFO	SRS640811	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYEJ-10A-01D A44333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44333	SRX609504	"Specific Capture analysis of normal sample TARGET-30-PATYEJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYEJ-10A-01D A44333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44333_1_lane_dupsFlagged.bam	SRR1423445	@dbgap@:reads/SRP012002/SRS640811/SRX609504/SRR1423445/SRR1423445.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYEJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMK-01A-01D_TARGET-30-PATYMK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMK-01A-01D_TARGET-30-PATYMK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-01A-01D	DNA	EFO	SRS640782	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-01A-01D A44342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44342	SRX609475	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-01A-01D A44342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44342_1_lane_dupsFlagged.bam	SRR1423386	@dbgap@:reads/SRP012002/SRS640782/SRX609475/SRR1423386/SRR1423386.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMK-01A-01D_TARGET-30-PATYMK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMK-01A-01D_TARGET-30-PATYMK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMK-10A-01D	DNA	EFO	SRS640831	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMK-10A-01D A44334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44334	SRX609524	"Specific Capture analysis of normal sample TARGET-30-PATYMK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMK-10A-01D A44334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44334_1_lane_dupsFlagged.bam	SRR1423419	@dbgap@:reads/SRP012002/SRS640831/SRX609524/SRR1423419/SRR1423419.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMS-01A-01D_TARGET-30-PATYMS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMS-01A-01D_TARGET-30-PATYMS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-01A-01D	DNA	EFO	SRS640873	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-01A-01D A44343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44343	SRX609566	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-01A-01D A44343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44343_1_lane_dupsFlagged.bam	SRR1423381	@dbgap@:reads/SRP012002/SRS640873/SRX609566/SRR1423381/SRR1423381.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMS-01A-01D_TARGET-30-PATYMS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMS-01A-01D_TARGET-30-PATYMS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMS-10A-01D	DNA	EFO	SRS640827	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMS-10A-01D A44335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44335	SRX609520	"Specific Capture analysis of normal sample TARGET-30-PATYMS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMS-10A-01D A44335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44335_1_lane_dupsFlagged.bam	SRR1423409	@dbgap@:reads/SRP012002/SRS640827/SRX609520/SRR1423409/SRR1423409.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMZ-01A-01D_TARGET-30-PATYMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMZ-01A-01D_TARGET-30-PATYMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-01A-01D	DNA	EFO	SRS640817	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-01A-01D A44344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44344	SRX609509	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-01A-01D A44344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44344_1_lane_dupsFlagged.bam	SRR1423411	@dbgap@:reads/SRP012002/SRS640817/SRX609509/SRR1423411/SRR1423411.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYMZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYMZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMZ-01A-01D_TARGET-30-PATYMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYMZ-01A-01D_TARGET-30-PATYMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYMZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYMZ-10A-01D	DNA	EFO	SRS640820	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYMZ-10A-01D A44336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44336	SRX609513	"Specific Capture analysis of normal sample TARGET-30-PATYMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYMZ-10A-01D A44336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44336_1_lane_dupsFlagged.bam	SRR1423398	@dbgap@:reads/SRP012002/SRS640820/SRX609513/SRR1423398/SRR1423398.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYMZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYPH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYPH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYPH-01A-01D_TARGET-30-PATYPH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYPH-01A-01D_TARGET-30-PATYPH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYPH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYPH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-01A-01D	DNA	EFO	SRS640869	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-01A-01D A44345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44345	SRX609562	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-01A-01D A44345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44345_1_lane_dupsFlagged.bam	SRR1423395	@dbgap@:reads/SRP012002/SRS640869/SRX609562/SRR1423395/SRR1423395.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYPH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYPH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYPH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYPH-01A-01D_TARGET-30-PATYPH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYPH-01A-01D_TARGET-30-PATYPH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYPH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYPH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYPH-10A-01D	DNA	EFO	SRS640780	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYPH-10A-01D A44337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44337	SRX609473	"Specific Capture analysis of normal sample TARGET-30-PATYPH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYPH-10A-01D A44337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44337_1_lane_dupsFlagged.bam	SRR1423427	@dbgap@:reads/SRP012002/SRS640780/SRX609473/SRR1423427/SRR1423427.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYPH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYWM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYWM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWM-01A-01D_TARGET-30-PATYWM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWM-01A-01D_TARGET-30-PATYWM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYWM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-01A-01D	DNA	EFO	SRS640855	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-01A-01D A44346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44346	SRX609548	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-01A-01D A44346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44346_1_lane_dupsFlagged.bam	SRR1423400	@dbgap@:reads/SRP012002/SRS640855/SRX609548/SRR1423400/SRR1423400.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYWM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYWM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWM-01A-01D_TARGET-30-PATYWM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWM-01A-01D_TARGET-30-PATYWM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYWM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWM-10A-01D	DNA	EFO	SRS640794	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWM-10A-01D A44338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44338	SRX609487	"Specific Capture analysis of normal sample TARGET-30-PATYWM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWM-10A-01D A44338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44338_1_lane_dupsFlagged.bam	SRR1423465	@dbgap@:reads/SRP012002/SRS640794/SRX609487/SRR1423465/SRR1423465.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWX-01A-01D_TARGET-30-PATYWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWX-01A-01D_TARGET-30-PATYWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYWX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-01A-01D	DNA	EFO	SRS640812	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-01A-01D A44347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44347	SRX609505	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATYWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-01A-01D A44347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44347_1_lane_dupsFlagged.bam	SRR1423380	@dbgap@:reads/SRP012002/SRS640812/SRX609505/SRR1423380/SRR1423380.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATYWX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATYWX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWX-01A-01D_TARGET-30-PATYWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATYWX-01A-01D_TARGET-30-PATYWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATYWX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATYWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATYWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATYWX-10A-01D	DNA	EFO	SRS640861	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATYWX-10A-01D A44339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44339	SRX609554	"Specific Capture analysis of normal sample TARGET-30-PATYWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATYWX-10A-01D A44339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44339_1_lane_dupsFlagged.bam	SRR1423457	@dbgap@:reads/SRP012002/SRS640861/SRX609554/SRR1423457/SRR1423457.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATYWX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZBH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZBH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZBH-01A-01D_TARGET-30-PATZBH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZBH-01A-01D_TARGET-30-PATZBH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZBH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZBH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-01A-01D	DNA	EFO	SRS640843	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-01A-01D A44348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44348	SRX609536	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZBH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-01A-01D A44348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44348_1_lane_dupsFlagged.bam	SRR1423440	@dbgap@:reads/SRP012002/SRS640843/SRX609536/SRR1423440/SRR1423440.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZBH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZBH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZBH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZBH-01A-01D_TARGET-30-PATZBH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZBH-01A-01D_TARGET-30-PATZBH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZBH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZBH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZBH-10A-01D	DNA	EFO	SRS640798	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZBH-10A-01D A44340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44340	SRX609491	"Specific Capture analysis of normal sample TARGET-30-PATZBH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZBH-10A-01D A44340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44340_1_lane_dupsFlagged.bam	SRR1423406	@dbgap@:reads/SRP012002/SRS640798/SRX609491/SRR1423406/SRR1423406.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZBH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZIG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZIG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZIG-01A-01D_TARGET-30-PATZIG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZIG-01A-01D_TARGET-30-PATZIG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZIG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZIG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-01A-01D	DNA	EFO	SRS640917	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-01A-01D A44487 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44487	SRX609610	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZIG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-01A-01D A44487 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44487_1_lane_dupsFlagged.bam	SRR1423508	@dbgap@:reads/SRP012002/SRS640917/SRX609610/SRR1423508/SRR1423508.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZIG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZIG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZIG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZIG-01A-01D_TARGET-30-PATZIG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZIG-01A-01D_TARGET-30-PATZIG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZIG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZIG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZIG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZIG-10A-01D	DNA	EFO	SRS640970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZIG-10A-01D A44479 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44479	SRX609663	"Specific Capture analysis of normal sample TARGET-30-PATZIG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZIG-10A-01D A44479 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44479_1_lane_dupsFlagged.bam	SRR1423573	@dbgap@:reads/SRP012002/SRS640970/SRX609663/SRR1423573/SRR1423573.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZIG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZRF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZRF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRF-01A-01D_TARGET-30-PATZRF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRF-01A-01D_TARGET-30-PATZRF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZRF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-01A-01D	DNA	EFO	SRS640808	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-01A-01D A44357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44357	SRX609501	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-01A-01D A44357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44357_1_lane_dupsFlagged.bam	SRR1423442	@dbgap@:reads/SRP012002/SRS640808/SRX609501/SRR1423442/SRR1423442.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZRF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZRF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRF-01A-01D_TARGET-30-PATZRF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRF-01A-01D_TARGET-30-PATZRF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZRF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRF-10A-01D	DNA	EFO	SRS640792	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRF-10A-01D A44349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44349	SRX609485	"Specific Capture analysis of normal sample TARGET-30-PATZRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRF-10A-01D A44349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44349_1_lane_dupsFlagged.bam	SRR1423388	@dbgap@:reads/SRP012002/SRS640792/SRX609485/SRR1423388/SRR1423388.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZRU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZRU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRU-01A-01D_TARGET-30-PATZRU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRU-01A-01D_TARGET-30-PATZRU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZRU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-01A-01D	DNA	EFO	SRS640854	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-01A-01D A44358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44358	SRX609547	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PATZRU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-01A-01D A44358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44358_1_lane_dupsFlagged.bam	SRR1423383	@dbgap@:reads/SRP012002/SRS640854/SRX609547/SRR1423383/SRR1423383.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PATZRU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PATZRU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRU-01A-01D_TARGET-30-PATZRU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PATZRU-01A-01D_TARGET-30-PATZRU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PATZRU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PATZRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PATZRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PATZRU-10A-01D	DNA	EFO	SRS640848	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PATZRU-10A-01D A44350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44350	SRX609541	"Specific Capture analysis of normal sample TARGET-30-PATZRU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PATZRU-10A-01D A44350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44350_1_lane_dupsFlagged.bam	SRR1423404	@dbgap@:reads/SRP012002/SRS640848/SRX609541/SRR1423404/SRR1423404.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PATZRU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUAKT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUAKT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAKT-01A-01D_TARGET-30-PAUAKT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAKT-01A-01D_TARGET-30-PAUAKT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUAKT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAKT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-01A-01D	DNA	EFO	SRS640797	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-01A-01D A44359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44359	SRX609490	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUAKT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-01A-01D A44359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44359_1_lane_dupsFlagged.bam	SRR1423463	@dbgap@:reads/SRP012002/SRS640797/SRX609490/SRR1423463/SRR1423463.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAKT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUAKT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUAKT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAKT-01A-01D_TARGET-30-PAUAKT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAKT-01A-01D_TARGET-30-PAUAKT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUAKT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAKT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUAKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAKT-10A-01D	DNA	EFO	SRS640796	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAKT-10A-01D A44351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44351	SRX609489	"Specific Capture analysis of normal sample TARGET-30-PAUAKT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAKT-10A-01D A44351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44351_1_lane_dupsFlagged.bam	SRR1423387	@dbgap@:reads/SRP012002/SRS640796/SRX609489/SRR1423387/SRR1423387.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAKT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUATG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUATG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUATG-01A-01D_TARGET-30-PAUATG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUATG-01A-01D_TARGET-30-PAUATG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUATG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUATG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-01A-01D	DNA	EFO	SRS640800	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-01A-01D A44360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44360	SRX609494	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUATG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-01A-01D A44360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44360_1_lane_dupsFlagged.bam	SRR1423371	@dbgap@:reads/SRP012002/SRS640800/SRX609494/SRR1423371/SRR1423371.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUATG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUATG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUATG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUATG-01A-01D_TARGET-30-PAUATG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUATG-01A-01D_TARGET-30-PAUATG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUATG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUATG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUATG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUATG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUATG-10A-01D	DNA	EFO	SRS640826	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUATG-10A-01D A44352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44352	SRX609519	"Specific Capture analysis of normal sample TARGET-30-PAUATG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUATG-10A-01D A44352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44352_1_lane_dupsFlagged.bam	SRR1423451	@dbgap@:reads/SRP012002/SRS640826/SRX609519/SRR1423451/SRR1423451.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUATG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUAZA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUAZA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAZA-01A-01D_TARGET-30-PAUAZA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAZA-01A-01D_TARGET-30-PAUAZA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUAZA-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAZA-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-01A-01D	DNA	EFO	SRS640778	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-01A-01D A44361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44361	SRX609471	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUAZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-01A-01D A44361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44361_1_lane_dupsFlagged.bam	SRR1423418	@dbgap@:reads/SRP012002/SRS640778/SRX609471/SRR1423418/SRR1423418.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAZA-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUAZA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUAZA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAZA-01A-01D_TARGET-30-PAUAZA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUAZA-01A-01D_TARGET-30-PAUAZA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUAZA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAZA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUAZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUAZA-10A-01D	DNA	EFO	SRS640815	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUAZA-10A-01D A44353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44353	SRX609508	"Specific Capture analysis of normal sample TARGET-30-PAUAZA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUAZA-10A-01D A44353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44353_1_lane_dupsFlagged.bam	SRR1423443	@dbgap@:reads/SRP012002/SRS640815/SRX609508/SRR1423443/SRR1423443.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUAZA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBDC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBDC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBDC-01A-01D_TARGET-30-PAUBDC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBDC-01A-01D_TARGET-30-PAUBDC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBDC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBDC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-01A-01D	DNA	EFO	SRS640776	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-01A-01D A44362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44362	SRX609469	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-01A-01D A44362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44362_1_lane_dupsFlagged.bam	SRR1423374	@dbgap@:reads/SRP012002/SRS640776/SRX609469/SRR1423374/SRR1423374.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBDC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBDC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBDC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBDC-01A-01D_TARGET-30-PAUBDC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBDC-01A-01D_TARGET-30-PAUBDC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBDC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBDC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBDC-10A-01D	DNA	EFO	SRS640841	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBDC-10A-01D A44354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44354	SRX609534	"Specific Capture analysis of normal sample TARGET-30-PAUBDC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBDC-10A-01D A44354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44354_1_lane_dupsFlagged.bam	SRR1423413	@dbgap@:reads/SRP012002/SRS640841/SRX609534/SRR1423413/SRR1423413.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBDC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBEC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBEC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBEC-01A-01D_TARGET-30-PAUBEC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBEC-01A-01D_TARGET-30-PAUBEC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBEC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBEC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-01A-01D	DNA	EFO	SRS640833	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-01A-01D A44363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44363	SRX609526	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-01A-01D A44363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44363_1_lane_dupsFlagged.bam	SRR1423392	@dbgap@:reads/SRP012002/SRS640833/SRX609526/SRR1423392/SRR1423392.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBEC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBEC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBEC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBEC-01A-01D_TARGET-30-PAUBEC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBEC-01A-01D_TARGET-30-PAUBEC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBEC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBEC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBEC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBEC-10A-01D	DNA	EFO	SRS640813	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBEC-10A-01D A44355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44355	SRX609506	"Specific Capture analysis of normal sample TARGET-30-PAUBEC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBEC-10A-01D A44355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44355_1_lane_dupsFlagged.bam	SRR1423460	@dbgap@:reads/SRP012002/SRS640813/SRX609506/SRR1423460/SRR1423460.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBEC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBFU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBFU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBFU-01A-01D_TARGET-30-PAUBFU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBFU-01A-01D_TARGET-30-PAUBFU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBFU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBFU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-01A-01D	DNA	EFO	SRS640785	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-01A-01D A44364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44364	SRX609478	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUBFU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-01A-01D A44364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44364_1_lane_dupsFlagged.bam	SRR1423394	@dbgap@:reads/SRP012002/SRS640785/SRX609478/SRR1423394/SRR1423394.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBFU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBFU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBFU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBFU-01A-01D_TARGET-30-PAUBFU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBFU-01A-01D_TARGET-30-PAUBFU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBFU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBFU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBFU-10A-01D	DNA	EFO	SRS640822	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBFU-10A-01D A44356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44356	SRX609515	"Specific Capture analysis of normal sample TARGET-30-PAUBFU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBFU-10A-01D A44356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44356_1_lane_dupsFlagged.bam	SRR1423433	@dbgap@:reads/SRP012002/SRS640822/SRX609515/SRR1423433/SRR1423433.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBFU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBGW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBGW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBGW-01A-01D_TARGET-30-PAUBGW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBGW-01A-01D_TARGET-30-PAUBGW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBGW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBGW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-01A-01D	DNA	EFO	SRS640777	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-01A-01D A44373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44373	SRX609470	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBGW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-01A-01D A44373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44373_1_lane_dupsFlagged.bam	SRR1423407	@dbgap@:reads/SRP012002/SRS640777/SRX609470/SRR1423407/SRR1423407.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBGW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBGW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBGW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBGW-01A-01D_TARGET-30-PAUBGW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBGW-01A-01D_TARGET-30-PAUBGW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBGW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBGW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBGW-10A-01D	DNA	EFO	SRS640789	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBGW-10A-01D A44365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44365	SRX609482	"Specific Capture analysis of normal sample TARGET-30-PAUBGW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBGW-10A-01D A44365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44365_1_lane_dupsFlagged.bam	SRR1423435	@dbgap@:reads/SRP012002/SRS640789/SRX609482/SRR1423435/SRR1423435.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBGW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBHV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBHV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBHV-01A-01D_TARGET-30-PAUBHV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBHV-01A-01D_TARGET-30-PAUBHV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBHV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBHV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-01A-01D	DNA	EFO	SRS640856	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-01A-01D A44374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44374	SRX609549	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-01A-01D A44374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44374_1_lane_dupsFlagged.bam	SRR1423446	@dbgap@:reads/SRP012002/SRS640856/SRX609549/SRR1423446/SRR1423446.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBHV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBHV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBHV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBHV-01A-01D_TARGET-30-PAUBHV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBHV-01A-01D_TARGET-30-PAUBHV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBHV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBHV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBHV-10A-01D	DNA	EFO	SRS640871	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBHV-10A-01D A44366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44366	SRX609563	"Specific Capture analysis of normal sample TARGET-30-PAUBHV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBHV-10A-01D A44366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44366_1_lane_dupsFlagged.bam	SRR1423393	@dbgap@:reads/SRP012002/SRS640871/SRX609563/SRR1423393/SRR1423393.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBHV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBPW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBPW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBPW-09A-01D_TARGET-30-PAUBPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBPW-09A-01D_TARGET-30-PAUBPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBPW-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBPW-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-09A-01D	DNA	EFO	SRS640872	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-09A-01D A44375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44375	SRX609565	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUBPW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-09A-01D A44375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44375_1_lane_dupsFlagged.bam	SRR1423416	@dbgap@:reads/SRP012002/SRS640872/SRX609565/SRR1423416/SRR1423416.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBPW-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBPW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBPW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBPW-09A-01D_TARGET-30-PAUBPW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBPW-09A-01D_TARGET-30-PAUBPW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBPW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBPW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBPW-10A-01D	DNA	EFO	SRS640865	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBPW-10A-01D A44367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44367	SRX609558	"Specific Capture analysis of normal sample TARGET-30-PAUBPW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBPW-10A-01D A44367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44367_1_lane_dupsFlagged.bam	SRR1423401	@dbgap@:reads/SRP012002/SRS640865/SRX609558/SRR1423401/SRR1423401.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBPW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBRR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBRR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBRR-01A-01D_TARGET-30-PAUBRR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBRR-01A-01D_TARGET-30-PAUBRR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBRR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBRR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-01A-01D	DNA	EFO	SRS640791	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-01A-01D A44376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44376	SRX609484	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBRR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-01A-01D A44376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44376_1_lane_dupsFlagged.bam	SRR1423437	@dbgap@:reads/SRP012002/SRS640791/SRX609484/SRR1423437/SRR1423437.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBRR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBRR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBRR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBRR-01A-01D_TARGET-30-PAUBRR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBRR-01A-01D_TARGET-30-PAUBRR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBRR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBRR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBRR-10A-01D	DNA	EFO	SRS640809	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBRR-10A-01D A44368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44368	SRX609502	"Specific Capture analysis of normal sample TARGET-30-PAUBRR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBRR-10A-01D A44368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44368_1_lane_dupsFlagged.bam	SRR1423405	@dbgap@:reads/SRP012002/SRS640809/SRX609502/SRR1423405/SRR1423405.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBRR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBSW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBSW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBSW-01A-01D_TARGET-30-PAUBSW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBSW-01A-01D_TARGET-30-PAUBSW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBSW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBSW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-01A-01D	DNA	EFO	SRS640837	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-01A-01D A44377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44377	SRX609530	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBSW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-01A-01D A44377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44377_1_lane_dupsFlagged.bam	SRR1423432	@dbgap@:reads/SRP012002/SRS640837/SRX609530/SRR1423432/SRR1423432.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBSW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBSW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBSW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBSW-01A-01D_TARGET-30-PAUBSW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBSW-01A-01D_TARGET-30-PAUBSW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBSW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBSW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBSW-10A-01D	DNA	EFO	SRS640801	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBSW-10A-01D A44369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44369	SRX609493	"Specific Capture analysis of normal sample TARGET-30-PAUBSW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBSW-10A-01D A44369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44369_1_lane_dupsFlagged.bam	SRR1423379	@dbgap@:reads/SRP012002/SRS640801/SRX609493/SRR1423379/SRR1423379.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBSW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBVN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBVN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBVN-01A-01D_TARGET-30-PAUBVN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBVN-01A-01D_TARGET-30-PAUBVN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBVN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBVN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-01A-01D	DNA	EFO	SRS640860	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-01A-01D A44378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44378	SRX609553	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBVN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-01A-01D A44378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44378_1_lane_dupsFlagged.bam	SRR1423373	@dbgap@:reads/SRP012002/SRS640860/SRX609553/SRR1423373/SRR1423373.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBVN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBVN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBVN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBVN-01A-01D_TARGET-30-PAUBVN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBVN-01A-01D_TARGET-30-PAUBVN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBVN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBVN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBVN-10A-01D	DNA	EFO	SRS640845	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBVN-10A-01D A44370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44370	SRX609539	"Specific Capture analysis of normal sample TARGET-30-PAUBVN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBVN-10A-01D A44370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44370_1_lane_dupsFlagged.bam	SRR1423438	@dbgap@:reads/SRP012002/SRS640845/SRX609539/SRR1423438/SRR1423438.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBVN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBWP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBWP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBWP-01A-01D_TARGET-30-PAUBWP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBWP-01A-01D_TARGET-30-PAUBWP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBWP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBWP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-01A-01D	DNA	EFO	SRS640838	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-01A-01D A44379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44379	SRX609532	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-01A-01D A44379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44379_1_lane_dupsFlagged.bam	SRR1423397	@dbgap@:reads/SRP012002/SRS640838/SRX609532/SRR1423397/SRR1423397.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBWP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBWP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBWP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBWP-01A-01D_TARGET-30-PAUBWP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBWP-01A-01D_TARGET-30-PAUBWP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBWP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBWP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBWP-10A-01D	DNA	EFO	SRS640842	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBWP-10A-01D A44371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44371	SRX609535	"Specific Capture analysis of normal sample TARGET-30-PAUBWP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBWP-10A-01D A44371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44371_1_lane_dupsFlagged.bam	SRR1423453	@dbgap@:reads/SRP012002/SRS640842/SRX609535/SRR1423453/SRR1423453.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBWP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBYW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBYW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBYW-01A-01D_TARGET-30-PAUBYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBYW-01A-01D_TARGET-30-PAUBYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBYW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBYW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-01A-01D	DNA	EFO	SRS640874	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-01A-01D A44380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44380	SRX609567	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUBYW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-01A-01D A44380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44380_1_lane_dupsFlagged.bam	SRR1423425	@dbgap@:reads/SRP012002/SRS640874/SRX609567/SRR1423425/SRR1423425.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBYW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUBYW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUBYW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBYW-01A-01D_TARGET-30-PAUBYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUBYW-01A-01D_TARGET-30-PAUBYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUBYW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBYW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUBYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUBYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUBYW-10A-01D	DNA	EFO	SRS640864	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUBYW-10A-01D A44372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44372	SRX609557	"Specific Capture analysis of normal sample TARGET-30-PAUBYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUBYW-10A-01D A44372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44372_1_lane_dupsFlagged.bam	SRR1423403	@dbgap@:reads/SRP012002/SRS640864/SRX609557/SRR1423403/SRR1423403.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUBYW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCFI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCFI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCFI-01A-01D_TARGET-30-PAUCFI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCFI-01A-01D_TARGET-30-PAUCFI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCFI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCFI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-01A-01D	DNA	EFO	SRS640866	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-01A-01D A44389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44389	SRX609559	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCFI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-01A-01D A44389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44389_1_lane_dupsFlagged.bam	SRR1423369	@dbgap@:reads/SRP012002/SRS640866/SRX609559/SRR1423369/SRR1423369.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCFI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCFI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCFI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCFI-01A-01D_TARGET-30-PAUCFI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCFI-01A-01D_TARGET-30-PAUCFI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCFI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCFI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCFI-10A-01D	DNA	EFO	SRS640804	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCFI-10A-01D A44381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44381	SRX609497	"Specific Capture analysis of normal sample TARGET-30-PAUCFI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCFI-10A-01D A44381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44381_1_lane_dupsFlagged.bam	SRR1423423	@dbgap@:reads/SRP012002/SRS640804/SRX609497/SRR1423423/SRR1423423.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCFI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCGP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCGP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCGP-01A-01D_TARGET-30-PAUCGP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCGP-01A-01D_TARGET-30-PAUCGP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCGP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCGP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-01A-01D	DNA	EFO	SRS640805	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-01A-01D A44390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44390	SRX609498	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-01A-01D A44390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44390_1_lane_dupsFlagged.bam	SRR1423456	@dbgap@:reads/SRP012002/SRS640805/SRX609498/SRR1423456/SRR1423456.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCGP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCGP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCGP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCGP-01A-01D_TARGET-30-PAUCGP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCGP-01A-01D_TARGET-30-PAUCGP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCGP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCGP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCGP-10A-01D	DNA	EFO	SRS640802	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCGP-10A-01D A44382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44382	SRX609495	"Specific Capture analysis of normal sample TARGET-30-PAUCGP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCGP-10A-01D A44382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44382_1_lane_dupsFlagged.bam	SRR1423428	@dbgap@:reads/SRP012002/SRS640802/SRX609495/SRR1423428/SRR1423428.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCGP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCKF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCKF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCKF-01A-01D_TARGET-30-PAUCKF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCKF-01A-01D_TARGET-30-PAUCKF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCKF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCKF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-01A-01D	DNA	EFO	SRS640783	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-01A-01D A44391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44391	SRX609476	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUCKF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-01A-01D A44391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44391_1_lane_dupsFlagged.bam	SRR1423461	@dbgap@:reads/SRP012002/SRS640783/SRX609476/SRR1423461/SRR1423461.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCKF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCKF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCKF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCKF-01A-01D_TARGET-30-PAUCKF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCKF-01A-01D_TARGET-30-PAUCKF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCKF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCKF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCKF-10A-01D	DNA	EFO	SRS640807	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCKF-10A-01D A44383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44383	SRX609499	"Specific Capture analysis of normal sample TARGET-30-PAUCKF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCKF-10A-01D A44383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44383_1_lane_dupsFlagged.bam	SRR1423377	@dbgap@:reads/SRP012002/SRS640807/SRX609499/SRR1423377/SRR1423377.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCKF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCRL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCRL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCRL-01A-01D_TARGET-30-PAUCRL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCRL-01A-01D_TARGET-30-PAUCRL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCRL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCRL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-01A-01D	DNA	EFO	SRS640839	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-01A-01D A44392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44392	SRX609531	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUCRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-01A-01D A44392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44392_1_lane_dupsFlagged.bam	SRR1423439	@dbgap@:reads/SRP012002/SRS640839/SRX609531/SRR1423439/SRR1423439.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCRL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUCRL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUCRL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCRL-01A-01D_TARGET-30-PAUCRL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUCRL-01A-01D_TARGET-30-PAUCRL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUCRL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCRL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUCRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUCRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUCRL-10A-01D	DNA	EFO	SRS640829	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUCRL-10A-01D A44384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44384	SRX609522	"Specific Capture analysis of normal sample TARGET-30-PAUCRL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUCRL-10A-01D A44384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44384_1_lane_dupsFlagged.bam	SRR1423390	@dbgap@:reads/SRP012002/SRS640829/SRX609522/SRR1423390/SRR1423390.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUCRL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDBX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDBX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDBX-01A-01D_TARGET-30-PAUDBX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDBX-01A-01D_TARGET-30-PAUDBX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDBX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDBX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-01A-01D	DNA	EFO	SRS640922	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-01A-01D A44502 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44502	SRX609615	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDBX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-01A-01D A44502 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44502_1_lane_dupsFlagged.bam	SRR1423536	@dbgap@:reads/SRP012002/SRS640922/SRX609615/SRR1423536/SRR1423536.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDBX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDBX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDBX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDBX-01A-01D_TARGET-30-PAUDBX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDBX-01A-01D_TARGET-30-PAUDBX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDBX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDBX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDBX-10A-01D	DNA	EFO	SRS640965	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDBX-10A-01D A44494 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44494	SRX609659	"Specific Capture analysis of normal sample TARGET-30-PAUDBX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDBX-10A-01D A44494 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44494_1_lane_dupsFlagged.bam	SRR1423474	@dbgap@:reads/SRP012002/SRS640965/SRX609659/SRR1423474/SRR1423474.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDBX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDDZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDDZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDDZ-01A-01D_TARGET-30-PAUDDZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDDZ-01A-01D_TARGET-30-PAUDDZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDDZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDDZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-01A-01D	DNA	EFO	SRS640790	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-01A-01D A44393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44393	SRX609483	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDDZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-01A-01D A44393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44393_1_lane_dupsFlagged.bam	SRR1423452	@dbgap@:reads/SRP012002/SRS640790/SRX609483/SRR1423452/SRR1423452.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDDZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDDZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDDZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDDZ-01A-01D_TARGET-30-PAUDDZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDDZ-01A-01D_TARGET-30-PAUDDZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDDZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDDZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDDZ-10A-01D	DNA	EFO	SRS640836	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDDZ-10A-01D A44385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44385	SRX609529	"Specific Capture analysis of normal sample TARGET-30-PAUDDZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDDZ-10A-01D A44385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44385_1_lane_dupsFlagged.bam	SRR1423454	@dbgap@:reads/SRP012002/SRS640836/SRX609529/SRR1423454/SRR1423454.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDDZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDFR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDFR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDFR-01A-01D_TARGET-30-PAUDFR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDFR-01A-01D_TARGET-30-PAUDFR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDFR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDFR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-01A-01D	DNA	EFO	SRS640819	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-01A-01D A44394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44394	SRX609511	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDFR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-01A-01D A44394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44394_1_lane_dupsFlagged.bam	SRR1423424	@dbgap@:reads/SRP012002/SRS640819/SRX609511/SRR1423424/SRR1423424.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDFR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDFR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDFR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDFR-01A-01D_TARGET-30-PAUDFR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDFR-01A-01D_TARGET-30-PAUDFR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDFR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDFR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDFR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDFR-10A-01D	DNA	EFO	SRS640810	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDFR-10A-01D A44386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44386	SRX609503	"Specific Capture analysis of normal sample TARGET-30-PAUDFR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDFR-10A-01D A44386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44386_1_lane_dupsFlagged.bam	SRR1423436	@dbgap@:reads/SRP012002/SRS640810/SRX609503/SRR1423436/SRR1423436.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDFR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDIK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDIK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDIK-01A-01D_TARGET-30-PAUDIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDIK-01A-01D_TARGET-30-PAUDIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDIK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDIK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-01A-01D	DNA	EFO	SRS640844	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-01A-01D A44395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44395	SRX609537	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-01A-01D A44395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44395_1_lane_dupsFlagged.bam	SRR1423384	@dbgap@:reads/SRP012002/SRS640844/SRX609537/SRR1423384/SRR1423384.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDIK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDIK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDIK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDIK-01A-01D_TARGET-30-PAUDIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDIK-01A-01D_TARGET-30-PAUDIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDIK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDIK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDIK-10A-01D	DNA	EFO	SRS640806	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDIK-10A-01D A44387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44387	SRX609500	"Specific Capture analysis of normal sample TARGET-30-PAUDIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDIK-10A-01D A44387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44387_1_lane_dupsFlagged.bam	SRR1423429	@dbgap@:reads/SRP012002/SRS640806/SRX609500/SRR1423429/SRR1423429.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDIK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDMU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDMU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDMU-01A-01D_TARGET-30-PAUDMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDMU-01A-01D_TARGET-30-PAUDMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDMU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDMU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-01A-01D	DNA	EFO	SRS640859	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-01A-01D A44396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44396	SRX609552	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUDMU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-01A-01D A44396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44396_1_lane_dupsFlagged.bam	SRR1423417	@dbgap@:reads/SRP012002/SRS640859/SRX609552/SRR1423417/SRR1423417.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDMU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDMU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDMU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDMU-01A-01D_TARGET-30-PAUDMU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDMU-01A-01D_TARGET-30-PAUDMU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDMU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDMU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDMU-10A-01D	DNA	EFO	SRS640818	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDMU-10A-01D A44388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44388	SRX609512	"Specific Capture analysis of normal sample TARGET-30-PAUDMU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDMU-10A-01D A44388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44388_1_lane_dupsFlagged.bam	SRR1423459	@dbgap@:reads/SRP012002/SRS640818/SRX609512/SRR1423459/SRR1423459.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDMU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDPP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDPP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDPP-01A-01D_TARGET-30-PAUDPP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDPP-01A-01D_TARGET-30-PAUDPP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDPP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDPP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-01A-01D	DNA	EFO	SRS640825	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-01A-01D A44405 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44405	SRX609518	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-01A-01D A44405 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44405_1_lane_dupsFlagged.bam	SRR1423455	@dbgap@:reads/SRP012002/SRS640825/SRX609518/SRR1423455/SRR1423455.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDPP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDPP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDPP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDPP-01A-01D_TARGET-30-PAUDPP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDPP-01A-01D_TARGET-30-PAUDPP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDPP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDPP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDPP-10A-01D	DNA	EFO	SRS640852	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDPP-10A-01D A44397 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44397	SRX609546	"Specific Capture analysis of normal sample TARGET-30-PAUDPP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDPP-10A-01D A44397 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44397_1_lane_dupsFlagged.bam	SRR1423382	@dbgap@:reads/SRP012002/SRS640852/SRX609546/SRR1423382/SRR1423382.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDPP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDVA-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDVA-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDVA-09A-01D_TARGET-30-PAUDVA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDVA-09A-01D_TARGET-30-PAUDVA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDVA-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDVA-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-09A-01D	DNA	EFO	SRS640828	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-09A-01D A44406 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44406	SRX609521	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUDVA-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-09A-01D A44406 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44406_1_lane_dupsFlagged.bam	SRR1423421	@dbgap@:reads/SRP012002/SRS640828/SRX609521/SRR1423421/SRR1423421.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDVA-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUDVA-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUDVA-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDVA-09A-01D_TARGET-30-PAUDVA-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUDVA-09A-01D_TARGET-30-PAUDVA-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUDVA-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDVA-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUDVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUDVA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUDVA-10A-01D	DNA	EFO	SRS640816	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUDVA-10A-01D A44398 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44398	SRX609510	"Specific Capture analysis of normal sample TARGET-30-PAUDVA-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUDVA-10A-01D A44398 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44398_1_lane_dupsFlagged.bam	SRR1423402	@dbgap@:reads/SRP012002/SRS640816/SRX609510/SRR1423402/SRR1423402.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUDVA-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUELT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUELT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUELT-01A-01D_TARGET-30-PAUELT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUELT-01A-01D_TARGET-30-PAUELT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUELT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUELT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-01A-01D	DNA	EFO	SRS640834	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-01A-01D A44407 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44407	SRX609527	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUELT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-01A-01D A44407 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44407_1_lane_dupsFlagged.bam	SRR1423464	@dbgap@:reads/SRP012002/SRS640834/SRX609527/SRR1423464/SRR1423464.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUELT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUELT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUELT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUELT-01A-01D_TARGET-30-PAUELT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUELT-01A-01D_TARGET-30-PAUELT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUELT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUELT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUELT-10A-01D	DNA	EFO	SRS640846	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUELT-10A-01D A44399 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44399	SRX609538	"Specific Capture analysis of normal sample TARGET-30-PAUELT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUELT-10A-01D A44399 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44399_1_lane_dupsFlagged.bam	SRR1423391	@dbgap@:reads/SRP012002/SRS640846/SRX609538/SRR1423391/SRR1423391.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUELT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUEYW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUEYW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEYW-09A-01D_TARGET-30-PAUEYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEYW-09A-01D_TARGET-30-PAUEYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUEYW-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEYW-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-09A-01D	DNA	EFO	SRS640868	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-09A-01D A44408 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44408	SRX609561	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEYW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-09A-01D A44408 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44408_1_lane_dupsFlagged.bam	SRR1423434	@dbgap@:reads/SRP012002/SRS640868/SRX609561/SRR1423434/SRR1423434.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEYW-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUEYW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUEYW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEYW-09A-01D_TARGET-30-PAUEYW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEYW-09A-01D_TARGET-30-PAUEYW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUEYW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEYW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUEYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEYW-10A-01D	DNA	EFO	SRS640832	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEYW-10A-01D A44400 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44400	SRX609525	"Specific Capture analysis of normal sample TARGET-30-PAUEYW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEYW-10A-01D A44400 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44400_1_lane_dupsFlagged.bam	SRR1423466	@dbgap@:reads/SRP012002/SRS640832/SRX609525/SRR1423466/SRR1423466.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEYW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUEZU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUEZU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEZU-01A-01D_TARGET-30-PAUEZU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEZU-01A-01D_TARGET-30-PAUEZU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUEZU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEZU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-01A-01D	DNA	EFO	SRS640784	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-01A-01D A44409 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44409	SRX609477	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUEZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-01A-01D A44409 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44409_1_lane_dupsFlagged.bam	SRR1423450	@dbgap@:reads/SRP012002/SRS640784/SRX609477/SRR1423450/SRR1423450.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEZU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUEZU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUEZU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEZU-01A-01D_TARGET-30-PAUEZU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUEZU-01A-01D_TARGET-30-PAUEZU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUEZU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEZU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUEZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUEZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUEZU-10A-01D	DNA	EFO	SRS640824	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUEZU-10A-01D A44401 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44401	SRX609517	"Specific Capture analysis of normal sample TARGET-30-PAUEZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUEZU-10A-01D A44401 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44401_1_lane_dupsFlagged.bam	SRR1423420	@dbgap@:reads/SRP012002/SRS640824/SRX609517/SRR1423420/SRR1423420.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUEZU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFFP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFFP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFFP-01A-01D_TARGET-30-PAUFFP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFFP-01A-01D_TARGET-30-PAUFFP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFFP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFFP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-01A-01D	DNA	EFO	SRS640847	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-01A-01D A44410 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44410	SRX609540	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-01A-01D A44410 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44410_1_lane_dupsFlagged.bam	SRR1423375	@dbgap@:reads/SRP012002/SRS640847/SRX609540/SRR1423375/SRR1423375.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFFP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFFP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFFP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFFP-01A-01D_TARGET-30-PAUFFP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFFP-01A-01D_TARGET-30-PAUFFP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFFP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFFP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFFP-10A-01D	DNA	EFO	SRS640840	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFFP-10A-01D A44402 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44402	SRX609533	"Specific Capture analysis of normal sample TARGET-30-PAUFFP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFFP-10A-01D A44402 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44402_1_lane_dupsFlagged.bam	SRR1423372	@dbgap@:reads/SRP012002/SRS640840/SRX609533/SRR1423372/SRR1423372.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFFP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFIM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFIM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFIM-01A-01D_TARGET-30-PAUFIM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFIM-01A-01D_TARGET-30-PAUFIM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFIM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFIM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-01A-01D	DNA	EFO	SRS640858	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-01A-01D A44411 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44411	SRX609551	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUFIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-01A-01D A44411 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44411_1_lane_dupsFlagged.bam	SRR1423431	@dbgap@:reads/SRP012002/SRS640858/SRX609551/SRR1423431/SRR1423431.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFIM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFIM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFIM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFIM-01A-01D_TARGET-30-PAUFIM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFIM-01A-01D_TARGET-30-PAUFIM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFIM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFIM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFIM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFIM-10A-01D	DNA	EFO	SRS640821	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFIM-10A-01D A44403 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44403	SRX609514	"Specific Capture analysis of normal sample TARGET-30-PAUFIM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFIM-10A-01D A44403 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44403_1_lane_dupsFlagged.bam	SRR1423385	@dbgap@:reads/SRP012002/SRS640821/SRX609514/SRR1423385/SRR1423385.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFIM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFPG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFPG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFPG-01A-01D_TARGET-30-PAUFPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFPG-01A-01D_TARGET-30-PAUFPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFPG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFPG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-01A-01D	DNA	EFO	SRS640850	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-01A-01D A44412 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44412	SRX609543	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFPG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-01A-01D A44412 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44412_1_lane_dupsFlagged.bam	SRR1423415	@dbgap@:reads/SRP012002/SRS640850/SRX609543/SRR1423415/SRR1423415.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFPG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFPG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFPG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFPG-01A-01D_TARGET-30-PAUFPG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFPG-01A-01D_TARGET-30-PAUFPG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFPG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFPG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFPG-10A-01D	DNA	EFO	SRS640781	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFPG-10A-01D A44404 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44404	SRX609474	"Specific Capture analysis of normal sample TARGET-30-PAUFPG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFPG-10A-01D A44404 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44404_1_lane_dupsFlagged.bam	SRR1423370	@dbgap@:reads/SRP012002/SRS640781/SRX609474/SRR1423370/SRR1423370.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFPG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFSR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFSR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFSR-01A-01D_TARGET-30-PAUFSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFSR-01A-01D_TARGET-30-PAUFSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFSR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFSR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-01A-01D	DNA	EFO	SRS640948	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-01A-01D A44821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44821	SRX609641	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFSR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-01A-01D A44821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44821_1_lane_dupsFlagged.bam	SRR1423515	@dbgap@:reads/SRP012002/SRS640948/SRX609641/SRR1423515/SRR1423515.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFSR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFSR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFSR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFSR-01A-01D_TARGET-30-PAUFSR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFSR-01A-01D_TARGET-30-PAUFSR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFSR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFSR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFSR-10A-01D	DNA	EFO	SRS640911	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFSR-10A-01D A44813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44813	SRX609604	"Specific Capture analysis of normal sample TARGET-30-PAUFSR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUFSR-10A-01D A44813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44813_1_lane_dupsFlagged.bam	SRR1423497	@dbgap@:reads/SRP012002/SRS640911/SRX609604/SRR1423497/SRR1423497.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFSR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFUS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFUS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFUS-01A-01D_TARGET-30-PAUFUS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFUS-01A-01D_TARGET-30-PAUFUS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFUS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFUS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-01A-01D	DNA	EFO	SRS640857	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-01A-01D A44419 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44419	SRX609550	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-01A-01D A44419 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44419_1_lane_dupsFlagged.bam	SRR1423449	@dbgap@:reads/SRP012002/SRS640857/SRX609550/SRR1423449/SRR1423449.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFUS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFUS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFUS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFUS-01A-01D_TARGET-30-PAUFUS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFUS-01A-01D_TARGET-30-PAUFUS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFUS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFUS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFUS-10A-01D	DNA	EFO	SRS640835	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFUS-10A-01D A44413 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44413	SRX609528	"Specific Capture analysis of normal sample TARGET-30-PAUFUS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFUS-10A-01D A44413 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44413_1_lane_dupsFlagged.bam	SRR1423408	@dbgap@:reads/SRP012002/SRS640835/SRX609528/SRR1423408/SRR1423408.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFUS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFVW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFVW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFVW-01A-01D_TARGET-30-PAUFVW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFVW-01A-01D_TARGET-30-PAUFVW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFVW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFVW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-01A-01D	DNA	EFO	SRS640849	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-01A-01D A44420 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44420	SRX609542	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUFVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-01A-01D A44420 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44420_1_lane_dupsFlagged.bam	SRR1423396	@dbgap@:reads/SRP012002/SRS640849/SRX609542/SRR1423396/SRR1423396.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFVW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUFVW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUFVW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFVW-01A-01D_TARGET-30-PAUFVW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUFVW-01A-01D_TARGET-30-PAUFVW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUFVW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFVW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUFVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUFVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUFVW-10A-01D	DNA	EFO	SRS640867	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUFVW-10A-01D A44414 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44414	SRX609560	"Specific Capture analysis of normal sample TARGET-30-PAUFVW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUFVW-10A-01D A44414 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44414_1_lane_dupsFlagged.bam	SRR1423448	@dbgap@:reads/SRP012002/SRS640867/SRX609560/SRR1423448/SRR1423448.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUFVW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGGK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGGK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGGK-01A-01D_TARGET-30-PAUGGK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGGK-01A-01D_TARGET-30-PAUGGK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGGK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGGK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-01A-01D	DNA	EFO	SRS640876	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-01A-01D A44822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44822	SRX609569	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-01A-01D A44822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44822_1_lane_dupsFlagged.bam	SRR1423507	@dbgap@:reads/SRP012002/SRS640876/SRX609569/SRR1423507/SRR1423507.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGGK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGGK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGGK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGGK-01A-01D_TARGET-30-PAUGGK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGGK-01A-01D_TARGET-30-PAUGGK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGGK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGGK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGGK-10A-01D	DNA	EFO	SRS640884	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGGK-10A-01D A44814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44814	SRX609576	"Specific Capture analysis of normal sample TARGET-30-PAUGGK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGGK-10A-01D A44814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44814_1_lane_dupsFlagged.bam	SRR1423475	@dbgap@:reads/SRP012002/SRS640884/SRX609576/SRR1423475/SRR1423475.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGGK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGIP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGIP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGIP-01A-01D_TARGET-30-PAUGIP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGIP-01A-01D_TARGET-30-PAUGIP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGIP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGIP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-01A-01D	DNA	EFO	SRS640974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-01A-01D A44823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44823	SRX609667	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-01A-01D A44823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44823_1_lane_dupsFlagged.bam	SRR1423575	@dbgap@:reads/SRP012002/SRS640974/SRX609667/SRR1423575/SRR1423575.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGIP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGIP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGIP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGIP-01A-01D_TARGET-30-PAUGIP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGIP-01A-01D_TARGET-30-PAUGIP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGIP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGIP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGIP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGIP-10A-01D	DNA	EFO	SRS640885	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGIP-10A-01D A44815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44815	SRX609578	"Specific Capture analysis of normal sample TARGET-30-PAUGIP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGIP-10A-01D A44815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44815_1_lane_dupsFlagged.bam	SRR1423480	@dbgap@:reads/SRP012002/SRS640885/SRX609578/SRR1423480/SRR1423480.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGIP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGJI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGJI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGJI-01A-01D_TARGET-30-PAUGJI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGJI-01A-01D_TARGET-30-PAUGJI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGJI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGJI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-01A-01D	DNA	EFO	SRS640977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-01A-01D A44824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44824	SRX609670	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-01A-01D A44824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44824_1_lane_dupsFlagged.bam	SRR1423562	@dbgap@:reads/SRP012002/SRS640977/SRX609670/SRR1423562/SRR1423562.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGJI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGJI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGJI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGJI-01A-01D_TARGET-30-PAUGJI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGJI-01A-01D_TARGET-30-PAUGJI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGJI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGJI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGJI-10A-01D	DNA	EFO	SRS640969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGJI-10A-01D A44816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44816	SRX609662	"Specific Capture analysis of normal sample TARGET-30-PAUGJI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGJI-10A-01D A44816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44816_1_lane_dupsFlagged.bam	SRR1423495	@dbgap@:reads/SRP012002/SRS640969/SRX609662/SRR1423495/SRR1423495.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGJI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGNL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGNL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGNL-01A-01D_TARGET-30-PAUGNL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGNL-01A-01D_TARGET-30-PAUGNL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGNL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGNL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-01A-01D	DNA	EFO	SRS640958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-01A-01D A44833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44833	SRX609651	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGNL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-01A-01D A44833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44833_1_lane_dupsFlagged.bam	SRR1423541	@dbgap@:reads/SRP012002/SRS640958/SRX609651/SRR1423541/SRR1423541.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGNL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGNL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGNL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGNL-01A-01D_TARGET-30-PAUGNL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGNL-01A-01D_TARGET-30-PAUGNL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGNL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGNL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGNL-10A-01D	DNA	EFO	SRS640933	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGNL-10A-01D A44825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44825	SRX609626	"Specific Capture analysis of normal sample TARGET-30-PAUGNL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGNL-10A-01D A44825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44825_1_lane_dupsFlagged.bam	SRR1423525	@dbgap@:reads/SRP012002/SRS640933/SRX609626/SRR1423525/SRR1423525.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGNL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGRP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGRP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGRP-01A-01D_TARGET-30-PAUGRP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGRP-01A-01D_TARGET-30-PAUGRP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGRP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGRP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-01A-01D	DNA	EFO	SRS640853	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-01A-01D A44421 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44421	SRX609545	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGRP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-01A-01D A44421 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44421_1_lane_dupsFlagged.bam	SRR1423412	@dbgap@:reads/SRP012002/SRS640853/SRX609545/SRR1423412/SRR1423412.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGRP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGRP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGRP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGRP-01A-01D_TARGET-30-PAUGRP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGRP-01A-01D_TARGET-30-PAUGRP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGRP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGRP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGRP-10A-01D	DNA	EFO	SRS640795	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGRP-10A-01D A44415 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44415	SRX609488	"Specific Capture analysis of normal sample TARGET-30-PAUGRP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGRP-10A-01D A44415 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44415_1_lane_dupsFlagged.bam	SRR1423410	@dbgap@:reads/SRP012002/SRS640795/SRX609488/SRR1423410/SRR1423410.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGRP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGVZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGVZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGVZ-01A-01D_TARGET-30-PAUGVZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGVZ-01A-01D_TARGET-30-PAUGVZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGVZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGVZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-01A-01D	DNA	EFO	SRS640899	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-01A-01D A44834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44834	SRX609592	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGVZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-01A-01D A44834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44834_1_lane_dupsFlagged.bam	SRR1423563	@dbgap@:reads/SRP012002/SRS640899/SRX609592/SRR1423563/SRR1423563.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGVZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGVZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGVZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGVZ-01A-01D_TARGET-30-PAUGVZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGVZ-01A-01D_TARGET-30-PAUGVZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGVZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGVZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGVZ-10A-01D	DNA	EFO	SRS640943	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGVZ-10A-01D A44826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44826	SRX609636	"Specific Capture analysis of normal sample TARGET-30-PAUGVZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGVZ-10A-01D A44826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44826_1_lane_dupsFlagged.bam	SRR1423567	@dbgap@:reads/SRP012002/SRS640943/SRX609636/SRR1423567/SRR1423567.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGVZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGWT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGWT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGWT-01A-01D_TARGET-30-PAUGWT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGWT-01A-01D_TARGET-30-PAUGWT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGWT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGWT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-01A-01D	DNA	EFO	SRS640788	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-01A-01D A44422 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44422	SRX609481	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-01A-01D A44422 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44422_1_lane_dupsFlagged.bam	SRR1423426	@dbgap@:reads/SRP012002/SRS640788/SRX609481/SRR1423426/SRR1423426.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGWT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGWT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGWT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGWT-01A-01D_TARGET-30-PAUGWT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGWT-01A-01D_TARGET-30-PAUGWT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGWT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGWT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGWT-10A-01D	DNA	EFO	SRS640799	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGWT-10A-01D A44416 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44416	SRX609492	"Specific Capture analysis of normal sample TARGET-30-PAUGWT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUGWT-10A-01D A44416 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44416_1_lane_dupsFlagged.bam	SRR1423399	@dbgap@:reads/SRP012002/SRS640799/SRX609492/SRR1423399/SRR1423399.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGWT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGZD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGZD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGZD-01A-01D_TARGET-30-PAUGZD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGZD-01A-01D_TARGET-30-PAUGZD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGZD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGZD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-01A-01D	DNA	EFO	SRS640956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-01A-01D A44835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44835	SRX609649	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUGZD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-01A-01D A44835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44835_1_lane_dupsFlagged.bam	SRR1423524	@dbgap@:reads/SRP012002/SRS640956/SRX609649/SRR1423524/SRR1423524.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGZD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUGZD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUGZD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGZD-01A-01D_TARGET-30-PAUGZD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUGZD-01A-01D_TARGET-30-PAUGZD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUGZD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGZD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUGZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUGZD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUGZD-10A-01D	DNA	EFO	SRS640913	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUGZD-10A-01D A44827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44827	SRX609606	"Specific Capture analysis of normal sample TARGET-30-PAUGZD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUGZD-10A-01D A44827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44827_1_lane_dupsFlagged.bam	SRR1423576	@dbgap@:reads/SRP012002/SRS640913/SRX609606/SRR1423576/SRR1423576.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUGZD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHBZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHBZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHBZ-01A-01D_TARGET-30-PAUHBZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHBZ-01A-01D_TARGET-30-PAUHBZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHBZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHBZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-01A-01D	DNA	EFO	SRS640973	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-01A-01D A44836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44836	SRX609666	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-01A-01D A44836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44836_1_lane_dupsFlagged.bam	SRR1423532	@dbgap@:reads/SRP012002/SRS640973/SRX609666/SRR1423532/SRR1423532.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHBZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHBZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHBZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHBZ-01A-01D_TARGET-30-PAUHBZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHBZ-01A-01D_TARGET-30-PAUHBZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHBZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHBZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHBZ-10A-01D	DNA	EFO	SRS640888	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHBZ-10A-01D A44828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44828	SRX609581	"Specific Capture analysis of normal sample TARGET-30-PAUHBZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHBZ-10A-01D A44828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44828_1_lane_dupsFlagged.bam	SRR1423570	@dbgap@:reads/SRP012002/SRS640888/SRX609581/SRR1423570/SRR1423570.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHBZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHFW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHFW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHFW-01A-01D_TARGET-30-PAUHFW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHFW-01A-01D_TARGET-30-PAUHFW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHFW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHFW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-01A-01D	DNA	EFO	SRS640937	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-01A-01D A44504 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44504	SRX609630	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHFW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-01A-01D A44504 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44504_1_lane_dupsFlagged.bam	SRR1423490	@dbgap@:reads/SRP012002/SRS640937/SRX609630/SRR1423490/SRR1423490.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHFW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHFW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHFW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHFW-01A-01D_TARGET-30-PAUHFW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHFW-01A-01D_TARGET-30-PAUHFW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHFW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHFW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHFW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHFW-10A-01D	DNA	EFO	SRS640903	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHFW-10A-01D A44496 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44496	SRX609596	"Specific Capture analysis of normal sample TARGET-30-PAUHFW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHFW-10A-01D A44496 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44496_1_lane_dupsFlagged.bam	SRR1423565	@dbgap@:reads/SRP012002/SRS640903/SRX609596/SRR1423565/SRR1423565.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHFW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHHW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHHW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHHW-01A-01D_TARGET-30-PAUHHW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHHW-01A-01D_TARGET-30-PAUHHW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHHW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHHW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-01A-01D	DNA	EFO	SRS640942	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-01A-01D A44837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44837	SRX609635	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-01A-01D A44837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44837_1_lane_dupsFlagged.bam	SRR1423506	@dbgap@:reads/SRP012002/SRS640942/SRX609635/SRR1423506/SRR1423506.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHHW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHHW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHHW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHHW-01A-01D_TARGET-30-PAUHHW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHHW-01A-01D_TARGET-30-PAUHHW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHHW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHHW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHHW-10A-01D	DNA	EFO	SRS640984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHHW-10A-01D A44829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44829	SRX609678	"Specific Capture analysis of normal sample TARGET-30-PAUHHW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUHHW-10A-01D A44829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44829_1_lane_dupsFlagged.bam	SRR1423488	@dbgap@:reads/SRP012002/SRS640984/SRX609678/SRR1423488/SRR1423488.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHHW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHIK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHIK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHIK-01A-01D_TARGET-30-PAUHIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHIK-01A-01D_TARGET-30-PAUHIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHIK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHIK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-01A-01D	DNA	EFO	SRS640793	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-01A-01D A44423 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44423	SRX609486	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHIK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-01A-01D A44423 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44423_1_lane_dupsFlagged.bam	SRR1423378	@dbgap@:reads/SRP012002/SRS640793/SRX609486/SRR1423378/SRR1423378.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHIK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHIK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHIK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHIK-01A-01D_TARGET-30-PAUHIK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHIK-01A-01D_TARGET-30-PAUHIK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHIK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHIK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHIK-10A-01D	DNA	EFO	SRS640870	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHIK-10A-01D A44417 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44417	SRX609564	"Specific Capture analysis of normal sample TARGET-30-PAUHIK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHIK-10A-01D A44417 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44417_1_lane_dupsFlagged.bam	SRR1423458	@dbgap@:reads/SRP012002/SRS640870/SRX609564/SRR1423458/SRR1423458.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHIK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHSJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHSJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHSJ-01A-01D_TARGET-30-PAUHSJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHSJ-01A-01D_TARGET-30-PAUHSJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHSJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHSJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-01A-01D	DNA	EFO	SRS640814	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-01A-01D A44424 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44424	SRX609507	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHSJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-01A-01D A44424 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44424_1_lane_dupsFlagged.bam	SRR1423368	@dbgap@:reads/SRP012002/SRS640814/SRX609507/SRR1423368/SRR1423368.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHSJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHSJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHSJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHSJ-01A-01D_TARGET-30-PAUHSJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHSJ-01A-01D_TARGET-30-PAUHSJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHSJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHSJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHSJ-10A-01D	DNA	EFO	SRS640823	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHSJ-10A-01D A44418 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44418	SRX609516	"Specific Capture analysis of normal sample TARGET-30-PAUHSJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHSJ-10A-01D A44418 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44418_1_lane_dupsFlagged.bam	SRR1423441	@dbgap@:reads/SRP012002/SRS640823/SRX609516/SRR1423441/SRR1423441.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHSJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHYY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHYY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHYY-01A-01D_TARGET-30-PAUHYY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHYY-01A-01D_TARGET-30-PAUHYY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHYY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHYY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-01A-01D	DNA	EFO	SRS653983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-01A-01D A44433 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44433	SRX645929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUHYY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-01A-01D A44433 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44433_1_lane_dupsFlagged.bam	SRR1506639	@dbgap@:reads/SRP012002/SRS653983/SRX645929/SRR1506639/SRR1506639.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHYY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUHYY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUHYY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHYY-01A-01D_TARGET-30-PAUHYY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUHYY-01A-01D_TARGET-30-PAUHYY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUHYY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHYY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUHYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUHYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUHYY-10A-01D	DNA	EFO	SRS653967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUHYY-10A-01D A44425 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44425	SRX645913	"Specific Capture analysis of normal sample TARGET-30-PAUHYY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUHYY-10A-01D A44425 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44425_1_lane_dupsFlagged.bam	SRR1506654	@dbgap@:reads/SRP012002/SRS653967/SRX645913/SRR1506654/SRR1506654.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUHYY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUICI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUICI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUICI-01A-01D_TARGET-30-PAUICI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUICI-01A-01D_TARGET-30-PAUICI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUICI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUICI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-01A-01D	DNA	EFO	SRS653981	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-01A-01D A44434 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44434	SRX645927	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUICI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-01A-01D A44434 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44434_1_lane_dupsFlagged.bam	SRR1506640	@dbgap@:reads/SRP012002/SRS653981/SRX645927/SRR1506640/SRR1506640.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUICI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUICI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUICI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUICI-01A-01D_TARGET-30-PAUICI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUICI-01A-01D_TARGET-30-PAUICI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUICI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUICI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUICI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUICI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUICI-10A-01D	DNA	EFO	SRS653990	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUICI-10A-01D A44426 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44426	SRX645936	"Specific Capture analysis of normal sample TARGET-30-PAUICI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUICI-10A-01D A44426 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44426_1_lane_dupsFlagged.bam	SRR1506666	@dbgap@:reads/SRP012002/SRS653990/SRX645936/SRR1506666/SRR1506666.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUICI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIFL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIFL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIFL-01A-01D_TARGET-30-PAUIFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIFL-01A-01D_TARGET-30-PAUIFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIFL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIFL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-01A-01D	DNA	EFO	SRS640962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-01A-01D A44838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44838	SRX609654	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUIFL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-01A-01D A44838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44838_1_lane_dupsFlagged.bam	SRR1423478	@dbgap@:reads/SRP012002/SRS640962/SRX609654/SRR1423478/SRR1423478.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIFL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIFL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIFL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIFL-01A-01D_TARGET-30-PAUIFL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIFL-01A-01D_TARGET-30-PAUIFL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIFL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIFL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIFL-10A-01D	DNA	EFO	SRS640907	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIFL-10A-01D A44830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44830	SRX609600	"Specific Capture analysis of normal sample TARGET-30-PAUIFL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIFL-10A-01D A44830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44830_1_lane_dupsFlagged.bam	SRR1423472	@dbgap@:reads/SRP012002/SRS640907/SRX609600/SRR1423472/SRR1423472.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIFL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIHH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIHH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIHH-01A-01D_TARGET-30-PAUIHH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIHH-01A-01D_TARGET-30-PAUIHH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIHH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIHH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-01A-01D	DNA	EFO	SRS640927	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-01A-01D A44839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44839	SRX609620	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-01A-01D A44839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44839_1_lane_dupsFlagged.bam	SRR1423501	@dbgap@:reads/SRP012002/SRS640927/SRX609620/SRR1423501/SRR1423501.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIHH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIHH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIHH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIHH-01A-01D_TARGET-30-PAUIHH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIHH-01A-01D_TARGET-30-PAUIHH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIHH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIHH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIHH-10A-01D	DNA	EFO	SRS640894	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIHH-10A-01D A44831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44831	SRX609587	"Specific Capture analysis of normal sample TARGET-30-PAUIHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIHH-10A-01D A44831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44831_1_lane_dupsFlagged.bam	SRR1423571	@dbgap@:reads/SRP012002/SRS640894/SRX609587/SRR1423571/SRR1423571.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIHH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUITU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUITU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUITU-01A-01D_TARGET-30-PAUITU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUITU-01A-01D_TARGET-30-PAUITU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUITU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUITU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-01A-01D	DNA	EFO	SRS640926	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-01A-01D A44840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44840	SRX609619	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUITU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-01A-01D A44840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44840_1_lane_dupsFlagged.bam	SRR1423476	@dbgap@:reads/SRP012002/SRS640926/SRX609619/SRR1423476/SRR1423476.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUITU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUITU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUITU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUITU-01A-01D_TARGET-30-PAUITU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUITU-01A-01D_TARGET-30-PAUITU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUITU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUITU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUITU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUITU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUITU-10A-01D	DNA	EFO	SRS640879	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUITU-10A-01D A44832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44832	SRX609572	"Specific Capture analysis of normal sample TARGET-30-PAUITU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUITU-10A-01D A44832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44832_1_lane_dupsFlagged.bam	SRR1423499	@dbgap@:reads/SRP012002/SRS640879/SRX609572/SRR1423499/SRR1423499.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUITU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIWS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIWS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIWS-01A-01D_TARGET-30-PAUIWS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIWS-01A-01D_TARGET-30-PAUIWS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIWS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIWS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-01A-01D	DNA	EFO	SRS640972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-01A-01D A44849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44849	SRX609664	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUIWS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-01A-01D A44849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44849_1_lane_dupsFlagged.bam	SRR1423540	@dbgap@:reads/SRP012002/SRS640972/SRX609664/SRR1423540/SRR1423540.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIWS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUIWS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUIWS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIWS-01A-01D_TARGET-30-PAUIWS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUIWS-01A-01D_TARGET-30-PAUIWS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUIWS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIWS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUIWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUIWS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUIWS-10A-01D	DNA	EFO	SRS640912	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUIWS-10A-01D A44841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44841	SRX609605	"Specific Capture analysis of normal sample TARGET-30-PAUIWS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUIWS-10A-01D A44841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44841_1_lane_dupsFlagged.bam	SRR1423537	@dbgap@:reads/SRP012002/SRS640912/SRX609605/SRR1423537/SRR1423537.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUIWS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJLH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJLH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJLH-01A-01D_TARGET-30-PAUJLH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJLH-01A-01D_TARGET-30-PAUJLH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJLH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJLH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-01A-01D	DNA	EFO	SRS653969	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-01A-01D A44435 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44435	SRX645915	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJLH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-01A-01D A44435 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44435_1_lane_dupsFlagged.bam	SRR1506649	@dbgap@:reads/SRP012002/SRS653969/SRX645915/SRR1506649/SRR1506649.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJLH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJLH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJLH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJLH-01A-01D_TARGET-30-PAUJLH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJLH-01A-01D_TARGET-30-PAUJLH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJLH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJLH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJLH-10A-01D	DNA	EFO	SRS653980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJLH-10A-01D A44427 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44427	SRX645926	"Specific Capture analysis of normal sample TARGET-30-PAUJLH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJLH-10A-01D A44427 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44427_1_lane_dupsFlagged.bam	SRR1506644	@dbgap@:reads/SRP012002/SRS653980/SRX645926/SRR1506644/SRR1506644.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJLH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJPC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJPC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJPC-01A-01D_TARGET-30-PAUJPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJPC-01A-01D_TARGET-30-PAUJPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJPC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJPC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-01A-01D	DNA	EFO	SRS640893	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-01A-01D A44850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44850	SRX609586	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-01A-01D A44850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44850_1_lane_dupsFlagged.bam	SRR1423468	@dbgap@:reads/SRP012002/SRS640893/SRX609586/SRR1423468/SRR1423468.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJPC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJPC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJPC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJPC-01A-01D_TARGET-30-PAUJPC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJPC-01A-01D_TARGET-30-PAUJPC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJPC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJPC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJPC-10A-01D	DNA	EFO	SRS640892	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJPC-10A-01D A44842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44842	SRX609585	"Specific Capture analysis of normal sample TARGET-30-PAUJPC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUJPC-10A-01D A44842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44842_1_lane_dupsFlagged.bam	SRR1423520	@dbgap@:reads/SRP012002/SRS640892/SRX609585/SRR1423520/SRR1423520.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJPC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJRW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJRW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJRW-01A-01D_TARGET-30-PAUJRW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJRW-01A-01D_TARGET-30-PAUJRW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJRW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJRW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-01A-01D	DNA	EFO	SRS653977	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-01A-01D A44436 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44436	SRX645923	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJRW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-01A-01D A44436 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44436_1_lane_dupsFlagged.bam	SRR1506647	@dbgap@:reads/SRP012002/SRS653977/SRX645923/SRR1506647/SRR1506647.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJRW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJRW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJRW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJRW-01A-01D_TARGET-30-PAUJRW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJRW-01A-01D_TARGET-30-PAUJRW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJRW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJRW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJRW-10A-01D	DNA	EFO	SRS653984	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJRW-10A-01D A44428 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44428	SRX645930	"Specific Capture analysis of normal sample TARGET-30-PAUJRW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJRW-10A-01D A44428 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44428_1_lane_dupsFlagged.bam	SRR1506677	@dbgap@:reads/SRP012002/SRS653984/SRX645930/SRR1506677/SRR1506677.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJRW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJTY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJTY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJTY-01A-01D_TARGET-30-PAUJTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJTY-01A-01D_TARGET-30-PAUJTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJTY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJTY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-01A-01D	DNA	EFO	SRS640906	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-01A-01D A44437 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44437	SRX609599	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-01A-01D A44437 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44437_1_lane_dupsFlagged.bam	SRR1423539	@dbgap@:reads/SRP012002/SRS640906/SRX609599/SRR1423539/SRR1423539.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJTY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJTY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJTY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJTY-01A-01D_TARGET-30-PAUJTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJTY-01A-01D_TARGET-30-PAUJTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJTY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJTY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJTY-10A-01D	DNA	EFO	SRS640983	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJTY-10A-01D A44429 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44429	SRX609676	"Specific Capture analysis of normal sample TARGET-30-PAUJTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJTY-10A-01D A44429 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44429_1_lane_dupsFlagged.bam	SRR1423471	@dbgap@:reads/SRP012002/SRS640983/SRX609676/SRR1423471/SRR1423471.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJTY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJVX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJVX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJVX-01A-01D_TARGET-30-PAUJVX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJVX-01A-01D_TARGET-30-PAUJVX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJVX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJVX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-01A-01D	DNA	EFO	SRS640946	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-01A-01D A44488 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44488	SRX609639	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUJVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-01A-01D A44488 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44488_1_lane_dupsFlagged.bam	SRR1423549	@dbgap@:reads/SRP012002/SRS640946/SRX609639/SRR1423549/SRR1423549.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJVX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUJVX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUJVX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJVX-01A-01D_TARGET-30-PAUJVX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUJVX-01A-01D_TARGET-30-PAUJVX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUJVX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJVX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUJVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUJVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUJVX-10A-01D	DNA	EFO	SRS640905	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUJVX-10A-01D A44480 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44480	SRX609598	"Specific Capture analysis of normal sample TARGET-30-PAUJVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUJVX-10A-01D A44480 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44480_1_lane_dupsFlagged.bam	SRR1423514	@dbgap@:reads/SRP012002/SRS640905/SRX609598/SRR1423514/SRR1423514.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUJVX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKAP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKAP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAP-01A-01D_TARGET-30-PAUKAP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAP-01A-01D_TARGET-30-PAUKAP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKAP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-01A-01D	DNA	EFO	SRS640877	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-01A-01D A44438 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44438	SRX609571	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-01A-01D A44438 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44438_1_lane_dupsFlagged.bam	SRR1423512	@dbgap@:reads/SRP012002/SRS640877/SRX609571/SRR1423512/SRR1423512.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKAP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKAP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAP-01A-01D_TARGET-30-PAUKAP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAP-01A-01D_TARGET-30-PAUKAP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKAP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAP-10A-01D	DNA	EFO	SRS640966	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAP-10A-01D A44430 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44430	SRX609658	"Specific Capture analysis of normal sample TARGET-30-PAUKAP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKAP-10A-01D A44430 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44430_1_lane_dupsFlagged.bam	SRR1423548	@dbgap@:reads/SRP012002/SRS640966/SRX609658/SRR1423548/SRR1423548.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKAW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKAW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAW-01A-01D_TARGET-30-PAUKAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAW-01A-01D_TARGET-30-PAUKAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKAW-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAW-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-01A-01D	DNA	EFO	SRS640902	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-01A-01D A44851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44851	SRX609595	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKAW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-01A-01D A44851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44851_1_lane_dupsFlagged.bam	SRR1423551	@dbgap@:reads/SRP012002/SRS640902/SRX609595/SRR1423551/SRR1423551.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAW-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKAW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKAW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAW-01A-01D_TARGET-30-PAUKAW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKAW-01A-01D_TARGET-30-PAUKAW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKAW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKAW-10A-01D	DNA	EFO	SRS640895	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKAW-10A-01D A44843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44843	SRX609588	"Specific Capture analysis of normal sample TARGET-30-PAUKAW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKAW-10A-01D A44843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44843_1_lane_dupsFlagged.bam	SRR1423486	@dbgap@:reads/SRP012002/SRS640895/SRX609588/SRR1423486/SRR1423486.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKAW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKIJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKIJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKIJ-01A-01D_TARGET-30-PAUKIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKIJ-01A-01D_TARGET-30-PAUKIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKIJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKIJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-01A-01D	DNA	EFO	SRS640925	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-01A-01D A44852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44852	SRX609618	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-01A-01D A44852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44852_1_lane_dupsFlagged.bam	SRR1423559	@dbgap@:reads/SRP012002/SRS640925/SRX609618/SRR1423559/SRR1423559.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKIJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKIJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKIJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKIJ-01A-01D_TARGET-30-PAUKIJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKIJ-01A-01D_TARGET-30-PAUKIJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKIJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKIJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKIJ-10A-01D	DNA	EFO	SRS640967	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKIJ-10A-01D A44844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44844	SRX609661	"Specific Capture analysis of normal sample TARGET-30-PAUKIJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKIJ-10A-01D A44844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44844_1_lane_dupsFlagged.bam	SRR1423574	@dbgap@:reads/SRP012002/SRS640967/SRX609661/SRR1423574/SRR1423574.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKIJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKLK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKLK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKLK-01A-01D_TARGET-30-PAUKLK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKLK-01A-01D_TARGET-30-PAUKLK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKLK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKLK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-01A-01D	DNA	EFO	SRS640931	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-01A-01D A44439 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44439	SRX609624	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-01A-01D A44439 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44439_1_lane_dupsFlagged.bam	SRR1423546	@dbgap@:reads/SRP012002/SRS640931/SRX609624/SRR1423546/SRR1423546.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKLK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKLK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKLK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKLK-01A-01D_TARGET-30-PAUKLK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKLK-01A-01D_TARGET-30-PAUKLK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKLK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKLK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKLK-10A-01D	DNA	EFO	SRS640920	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKLK-10A-01D A44431 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44431	SRX609613	"Specific Capture analysis of normal sample TARGET-30-PAUKLK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUKLK-10A-01D A44431 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44431_1_lane_dupsFlagged.bam	SRR1423529	@dbgap@:reads/SRP012002/SRS640920/SRX609613/SRR1423529/SRR1423529.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKLK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKNU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKNU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKNU-01A-01D_TARGET-30-PAUKNU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKNU-01A-01D_TARGET-30-PAUKNU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKNU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKNU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-01A-01D	DNA	EFO	SRS640961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-01A-01D A44853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44853	SRX609655	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUKNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-01A-01D A44853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44853_1_lane_dupsFlagged.bam	SRR1423503	@dbgap@:reads/SRP012002/SRS640961/SRX609655/SRR1423503/SRR1423503.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKNU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKNU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKNU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKNU-01A-01D_TARGET-30-PAUKNU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKNU-01A-01D_TARGET-30-PAUKNU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKNU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKNU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKNU-10A-01D	DNA	EFO	SRS640918	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKNU-10A-01D A44845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44845	SRX609612	"Specific Capture analysis of normal sample TARGET-30-PAUKNU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKNU-10A-01D A44845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44845_1_lane_dupsFlagged.bam	SRR1423479	@dbgap@:reads/SRP012002/SRS640918/SRX609612/SRR1423479/SRR1423479.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKNU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKRF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKRF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKRF-01A-01D_TARGET-30-PAUKRF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKRF-01A-01D_TARGET-30-PAUKRF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKRF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKRF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-01A-01D	DNA	EFO	SRS640901	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-01A-01D A44854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44854	SRX609594	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-01A-01D A44854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44854_1_lane_dupsFlagged.bam	SRR1423543	@dbgap@:reads/SRP012002/SRS640901/SRX609594/SRR1423543/SRR1423543.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKRF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKRF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKRF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKRF-01A-01D_TARGET-30-PAUKRF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKRF-01A-01D_TARGET-30-PAUKRF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKRF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKRF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKRF-10A-01D	DNA	EFO	SRS640932	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKRF-10A-01D A44846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44846	SRX609625	"Specific Capture analysis of normal sample TARGET-30-PAUKRF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKRF-10A-01D A44846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44846_1_lane_dupsFlagged.bam	SRR1423510	@dbgap@:reads/SRP012002/SRS640932/SRX609625/SRR1423510/SRR1423510.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKRF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKVC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKVC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKVC-01A-01D_TARGET-30-PAUKVC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKVC-01A-01D_TARGET-30-PAUKVC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKVC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKVC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-01A-01D	DNA	EFO	SRS640889	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-01A-01D A44855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44855	SRX609582	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUKVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-01A-01D A44855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44855_1_lane_dupsFlagged.bam	SRR1423489	@dbgap@:reads/SRP012002/SRS640889/SRX609582/SRR1423489/SRR1423489.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKVC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUKVC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUKVC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKVC-01A-01D_TARGET-30-PAUKVC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUKVC-01A-01D_TARGET-30-PAUKVC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUKVC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKVC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUKVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUKVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUKVC-10A-01D	DNA	EFO	SRS640963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUKVC-10A-01D A44847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44847	SRX609656	"Specific Capture analysis of normal sample TARGET-30-PAUKVC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUKVC-10A-01D A44847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44847_1_lane_dupsFlagged.bam	SRR1423521	@dbgap@:reads/SRP012002/SRS640963/SRX609656/SRR1423521/SRR1423521.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUKVC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULMT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULMT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULMT-01A-01D_TARGET-30-PAULMT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULMT-01A-01D_TARGET-30-PAULMT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULMT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULMT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-01A-01D	DNA	EFO	SRS640883	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-01A-01D A44440 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44440	SRX609577	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-01A-01D A44440 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44440_1_lane_dupsFlagged.bam	SRR1423552	@dbgap@:reads/SRP012002/SRS640883/SRX609577/SRR1423552/SRR1423552.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULMT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULMT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULMT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULMT-01A-01D_TARGET-30-PAULMT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULMT-01A-01D_TARGET-30-PAULMT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULMT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULMT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULMT-10A-01D	DNA	EFO	SRS640887	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULMT-10A-01D A44432 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44432	SRX609580	"Specific Capture analysis of normal sample TARGET-30-PAULMT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULMT-10A-01D A44432 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44432_1_lane_dupsFlagged.bam	SRR1423577	@dbgap@:reads/SRP012002/SRS640887/SRX609580/SRR1423577/SRR1423577.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULMT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULNF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULNF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULNF-01A-01D_TARGET-30-PAULNF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULNF-01A-01D_TARGET-30-PAULNF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULNF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULNF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-01A-01D	DNA	EFO	SRS653993	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-01A-01D A44449 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44449	SRX645939	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-01A-01D A44449 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44449_1_lane_dupsFlagged.bam	SRR1506653	@dbgap@:reads/SRP012002/SRS653993/SRX645939/SRR1506653/SRR1506653.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULNF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULNF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULNF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULNF-01A-01D_TARGET-30-PAULNF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULNF-01A-01D_TARGET-30-PAULNF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULNF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULNF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULNF-10A-01D	DNA	EFO	SRS653970	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULNF-10A-01D A44441 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44441	SRX645916	"Specific Capture analysis of normal sample TARGET-30-PAULNF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAULNF-10A-01D A44441 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44441_1_lane_dupsFlagged.bam	SRR1506665	@dbgap@:reads/SRP012002/SRS653970/SRX645916/SRR1506665/SRR1506665.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULNF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULVH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULVH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULVH-01A-01D_TARGET-30-PAULVH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULVH-01A-01D_TARGET-30-PAULVH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULVH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULVH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-01A-01D	DNA	EFO	SRS640919	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-01A-01D A44856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44856	SRX609611	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAULVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-01A-01D A44856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44856_1_lane_dupsFlagged.bam	SRR1423519	@dbgap@:reads/SRP012002/SRS640919/SRX609611/SRR1423519/SRR1423519.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULVH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAULVH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAULVH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULVH-01A-01D_TARGET-30-PAULVH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAULVH-01A-01D_TARGET-30-PAULVH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAULVH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULVH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAULVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAULVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAULVH-10A-01D	DNA	EFO	SRS640909	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAULVH-10A-01D A44848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44848	SRX609602	"Specific Capture analysis of normal sample TARGET-30-PAULVH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAULVH-10A-01D A44848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44848_1_lane_dupsFlagged.bam	SRR1423509	@dbgap@:reads/SRP012002/SRS640909/SRX609602/SRR1423509/SRR1423509.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAULVH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMBB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMBB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMBB-01A-01D_TARGET-30-PAUMBB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMBB-01A-01D_TARGET-30-PAUMBB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMBB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMBB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-01A-01D	DNA	EFO	SRS640941	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-01A-01D A44865 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44865	SRX609634	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMBB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-01A-01D A44865 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44865_1_lane_dupsFlagged.bam	SRR1423534	@dbgap@:reads/SRP012002/SRS640941/SRX609634/SRR1423534/SRR1423534.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMBB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMBB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMBB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMBB-01A-01D_TARGET-30-PAUMBB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMBB-01A-01D_TARGET-30-PAUMBB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMBB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMBB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMBB-10A-01D	DNA	EFO	SRS640976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMBB-10A-01D A44857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44857	SRX609669	"Specific Capture analysis of normal sample TARGET-30-PAUMBB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUMBB-10A-01D A44857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44857_1_lane_dupsFlagged.bam	SRR1423496	@dbgap@:reads/SRP012002/SRS640976/SRX609669/SRR1423496/SRR1423496.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMBB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMMZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMMZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMMZ-01A-01D_TARGET-30-PAUMMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMMZ-01A-01D_TARGET-30-PAUMMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMMZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMMZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-01A-01D	DNA	EFO	SRS653962	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-01A-01D A44450 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44450	SRX645908	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-01A-01D A44450 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44450_1_lane_dupsFlagged.bam	SRR1506667	@dbgap@:reads/SRP012002/SRS653962/SRX645908/SRR1506667/SRR1506667.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMMZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMMZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMMZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMMZ-01A-01D_TARGET-30-PAUMMZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMMZ-01A-01D_TARGET-30-PAUMMZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMMZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMMZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMMZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMMZ-10A-01D	DNA	EFO	SRS653958	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMMZ-10A-01D A44442 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44442	SRX645904	"Specific Capture analysis of normal sample TARGET-30-PAUMMZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMMZ-10A-01D A44442 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44442_1_lane_dupsFlagged.bam	SRR1506636	@dbgap@:reads/SRP012002/SRS653958/SRX645904/SRR1506636/SRR1506636.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMMZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMUC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMUC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMUC-01A-01D_TARGET-30-PAUMUC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMUC-01A-01D_TARGET-30-PAUMUC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMUC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMUC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-01A-01D	DNA	EFO	SRS653978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-01A-01D A44451 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44451	SRX645924	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUMUC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-01A-01D A44451 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44451_1_lane_dupsFlagged.bam	SRR1506676	@dbgap@:reads/SRP012002/SRS653978/SRX645924/SRR1506676/SRR1506676.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMUC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMUC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMUC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMUC-01A-01D_TARGET-30-PAUMUC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMUC-01A-01D_TARGET-30-PAUMUC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMUC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMUC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMUC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMUC-10A-01D	DNA	EFO	SRS653953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMUC-10A-01D A44443 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44443	SRX645899	"Specific Capture analysis of normal sample TARGET-30-PAUMUC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMUC-10A-01D A44443 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44443_1_lane_dupsFlagged.bam	SRR1506643	@dbgap@:reads/SRP012002/SRS653953/SRX645899/SRR1506643/SRR1506643.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMUC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMXC-01A-01D_TARGET-30-PAUMXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMXC-01A-01D_TARGET-30-PAUMXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMXC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMXC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-01A-01D	DNA	EFO	SRS653987	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-01A-01D A44452 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44452	SRX645933	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUMXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-01A-01D A44452 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44452_1_lane_dupsFlagged.bam	SRR1506656	@dbgap@:reads/SRP012002/SRS653987/SRX645933/SRR1506656/SRR1506656.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMXC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUMXC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUMXC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMXC-01A-01D_TARGET-30-PAUMXC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUMXC-01A-01D_TARGET-30-PAUMXC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUMXC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMXC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUMXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUMXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUMXC-10A-01D	DNA	EFO	SRS653972	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUMXC-10A-01D A44444 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44444	SRX645918	"Specific Capture analysis of normal sample TARGET-30-PAUMXC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUMXC-10A-01D A44444 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44444_1_lane_dupsFlagged.bam	SRR1506672	@dbgap@:reads/SRP012002/SRS653972/SRX645918/SRR1506672/SRR1506672.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUMXC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNST-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNST-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNST-01A-01D_TARGET-30-PAUNST-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNST-01A-01D_TARGET-30-PAUNST-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNST-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNST-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-01A-01D	DNA	EFO	SRS653954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-01A-01D A44497 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44497	SRX645900	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-01A-01D A44497 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44497_1_lane_dupsFlagged.bam	SRR1506673	@dbgap@:reads/SRP012002/SRS653954/SRX645900/SRR1506673/SRR1506673.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNST-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNST-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNST-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNST-01A-01D_TARGET-30-PAUNST-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNST-01A-01D_TARGET-30-PAUNST-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNST-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNST-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNST-10A-01D	DNA	EFO	SRS653974	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNST-10A-01D A44489 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44489	SRX645920	"Specific Capture analysis of normal sample TARGET-30-PAUNST-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNST-10A-01D A44489 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44489_1_lane_dupsFlagged.bam	SRR1506635	@dbgap@:reads/SRP012002/SRS653974/SRX645920/SRR1506635/SRR1506635.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNST-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNTY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNTY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNTY-01A-01D_TARGET-30-PAUNTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNTY-01A-01D_TARGET-30-PAUNTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNTY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNTY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-01A-01D	DNA	EFO	SRS653963	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-01A-01D A44500 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44500	SRX645909	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNTY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-01A-01D A44500 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44500_1_lane_dupsFlagged.bam	SRR1506661	@dbgap@:reads/SRP012002/SRS653963/SRX645909/SRR1506661/SRR1506661.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNTY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNTY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNTY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNTY-01A-01D_TARGET-30-PAUNTY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNTY-01A-01D_TARGET-30-PAUNTY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNTY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNTY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNTY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNTY-10A-01D	DNA	EFO	SRS653985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNTY-10A-01D A44492 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44492	SRX645931	"Specific Capture analysis of normal sample TARGET-30-PAUNTY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNTY-10A-01D A44492 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44492_1_lane_dupsFlagged.bam	SRR1506659	@dbgap@:reads/SRP012002/SRS653985/SRX645931/SRR1506659/SRR1506659.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNTY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNWR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNWR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNWR-01A-01D_TARGET-30-PAUNWR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNWR-01A-01D_TARGET-30-PAUNWR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNWR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNWR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-01A-01D	DNA	EFO	SRS640886	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-01A-01D A44453 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44453	SRX609579	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUNWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-01A-01D A44453 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44453_1_lane_dupsFlagged.bam	SRR1423517	@dbgap@:reads/SRP012002/SRS640886/SRX609579/SRR1423517/SRR1423517.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNWR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUNWR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUNWR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNWR-01A-01D_TARGET-30-PAUNWR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUNWR-01A-01D_TARGET-30-PAUNWR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUNWR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNWR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUNWR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUNWR-10A-01D	DNA	EFO	SRS640940	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUNWR-10A-01D A44445 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44445	SRX609633	"Specific Capture analysis of normal sample TARGET-30-PAUNWR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUNWR-10A-01D A44445 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44445_1_lane_dupsFlagged.bam	SRR1423527	@dbgap@:reads/SRP012002/SRS640940/SRX609633/SRR1423527/SRR1423527.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUNWR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPDY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPDY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPDY-01A-01D_TARGET-30-PAUPDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPDY-01A-01D_TARGET-30-PAUPDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPDY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPDY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-01A-01D	DNA	EFO	SRS640923	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-01A-01D A44508 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44508	SRX609616	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPDY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-01A-01D A44508 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44508_1_lane_dupsFlagged.bam	SRR1423550	@dbgap@:reads/SRP012002/SRS640923/SRX609616/SRR1423550/SRR1423550.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPDY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPDY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPDY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPDY-01A-01D_TARGET-30-PAUPDY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPDY-01A-01D_TARGET-30-PAUPDY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPDY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPDY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPDY-10A-01D	DNA	EFO	SRS653951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPDY-10A-01D A44506 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44506	SRX645897	"Specific Capture analysis of normal sample TARGET-30-PAUPDY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPDY-10A-01D A44506 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44506_1_lane_dupsFlagged.bam	SRR1506638	@dbgap@:reads/SRP012002/SRS653951/SRX645897/SRR1506638/SRR1506638.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPDY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPGV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPGV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPGV-01A-01D_TARGET-30-PAUPGV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPGV-01A-01D_TARGET-30-PAUPGV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPGV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPGV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-01A-01D	DNA	EFO	SRS640951	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-01A-01D A44454 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44454	SRX609644	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-01A-01D A44454 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44454_1_lane_dupsFlagged.bam	SRR1423522	@dbgap@:reads/SRP012002/SRS640951/SRX609644/SRR1423522/SRR1423522.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPGV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPGV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPGV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPGV-01A-01D_TARGET-30-PAUPGV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPGV-01A-01D_TARGET-30-PAUPGV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPGV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPGV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPGV-10A-01D	DNA	EFO	SRS640950	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPGV-10A-01D A44446 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44446	SRX609642	"Specific Capture analysis of normal sample TARGET-30-PAUPGV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPGV-10A-01D A44446 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44446_1_lane_dupsFlagged.bam	SRR1423498	@dbgap@:reads/SRP012002/SRS640950/SRX609642/SRR1423498/SRR1423498.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPGV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPIC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPIC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPIC-01A-01D_TARGET-30-PAUPIC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPIC-01A-01D_TARGET-30-PAUPIC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPIC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPIC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-01A-01D	DNA	EFO	SRS640935	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-01A-01D A44455 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44455	SRX609627	"Specific Capture analysis of Peripheral Neuroblastic Tumor sample TARGET-30-PAUPIC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-01A-01D A44455 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44455_1_lane_dupsFlagged.bam	SRR1423500	@dbgap@:reads/SRP012002/SRS640935/SRX609627/SRR1423500/SRR1423500.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPIC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPIC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPIC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPIC-01A-01D_TARGET-30-PAUPIC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPIC-01A-01D_TARGET-30-PAUPIC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPIC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPIC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPIC-10A-01D	DNA	EFO	SRS640904	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPIC-10A-01D A44447 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44447	SRX609597	"Specific Capture analysis of normal sample TARGET-30-PAUPIC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPIC-10A-01D A44447 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44447_1_lane_dupsFlagged.bam	SRR1423531	@dbgap@:reads/SRP012002/SRS640904/SRX609597/SRR1423531/SRR1423531.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPIC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPRN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPRN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPRN-01A-01D_TARGET-30-PAUPRN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPRN-01A-01D_TARGET-30-PAUPRN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPRN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPRN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-01A-01D	DNA	EFO	SRS640930	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-01A-01D A44456 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44456	SRX609623	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUPRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-01A-01D A44456 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44456_1_lane_dupsFlagged.bam	SRR1423505	@dbgap@:reads/SRP012002/SRS640930/SRX609623/SRR1423505/SRR1423505.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPRN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPRN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPRN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPRN-01A-01D_TARGET-30-PAUPRN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPRN-01A-01D_TARGET-30-PAUPRN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPRN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPRN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPRN-10A-01D	DNA	EFO	SRS640916	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPRN-10A-01D A44448 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44448	SRX609609	"Specific Capture analysis of normal sample TARGET-30-PAUPRN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUPRN-10A-01D A44448 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44448_1_lane_dupsFlagged.bam	SRR1423483	@dbgap@:reads/SRP012002/SRS640916/SRX609609/SRR1423483/SRR1423483.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPRN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPWX-01A-01D_TARGET-30-PAUPWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPWX-01A-01D_TARGET-30-PAUPWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPWX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPWX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-01A-01D	DNA	EFO	SRS641113	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-01A-01D A44964 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44964	SRX610031	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUPWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-01A-01D A44964 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44964_1_lane_dupsFlagged.bam	SRR1424189	@dbgap@:reads/SRP012002/SRS641113/SRX610031/SRR1424189/SRR1424189.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPWX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUPWX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUPWX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPWX-01A-01D_TARGET-30-PAUPWX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUPWX-01A-01D_TARGET-30-PAUPWX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUPWX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPWX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUPWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUPWX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUPWX-10A-01D	DNA	EFO	SRS641005	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUPWX-10A-01D A44956 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44956	SRX609923	"Specific Capture analysis of normal sample TARGET-30-PAUPWX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUPWX-10A-01D A44956 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44956_1_lane_dupsFlagged.bam	SRR1424220	@dbgap@:reads/SRP012002/SRS641005/SRX609923/SRR1424220/SRR1424220.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUPWX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURCG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURCG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURCG-01A-01D_TARGET-30-PAURCG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURCG-01A-01D_TARGET-30-PAURCG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURCG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURCG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-01A-01D	DNA	EFO	SRS640952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-01A-01D A44866 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44866	SRX609645	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURCG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-01A-01D A44866 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44866_1_lane_dupsFlagged.bam	SRR1423485	@dbgap@:reads/SRP012002/SRS640952/SRX609645/SRR1423485/SRR1423485.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURCG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURCG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURCG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURCG-01A-01D_TARGET-30-PAURCG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURCG-01A-01D_TARGET-30-PAURCG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURCG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURCG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURCG-10A-01D	DNA	EFO	SRS640938	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURCG-10A-01D A44858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44858	SRX609632	"Specific Capture analysis of normal sample TARGET-30-PAURCG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURCG-10A-01D A44858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44858_1_lane_dupsFlagged.bam	SRR1423572	@dbgap@:reads/SRP012002/SRS640938/SRX609632/SRR1423572/SRR1423572.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURCG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURGD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURGD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURGD-01A-01D_TARGET-30-PAURGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURGD-01A-01D_TARGET-30-PAURGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURGD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURGD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-01A-01D	DNA	EFO	SRS653957	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-01A-01D A44465 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44465	SRX645903	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAURGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-01A-01D A44465 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44465_1_lane_dupsFlagged.bam	SRR1506651	@dbgap@:reads/SRP012002/SRS653957/SRX645903/SRR1506651/SRR1506651.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURGD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURGD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURGD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURGD-01A-01D_TARGET-30-PAURGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURGD-01A-01D_TARGET-30-PAURGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURGD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURGD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURGD-10A-01D	DNA	EFO	SRS653955	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURGD-10A-01D A44457 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44457	SRX645901	"Specific Capture analysis of normal sample TARGET-30-PAURGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURGD-10A-01D A44457 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44457_1_lane_dupsFlagged.bam	SRR1506670	@dbgap@:reads/SRP012002/SRS653955/SRX645901/SRR1506670/SRR1506670.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURGD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURPL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURPL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURPL-01A-01D_TARGET-30-PAURPL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURPL-01A-01D_TARGET-30-PAURPL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURPL-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURPL-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-01A-01D	DNA	EFO	SRS653976	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-01A-01D A44507 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44507	SRX645922	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-01A-01D A44507 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44507_1_lane_dupsFlagged.bam	SRR1506674	@dbgap@:reads/SRP012002/SRS653976/SRX645922/SRR1506674/SRR1506674.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURPL-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURPL-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURPL-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURPL-01A-01D_TARGET-30-PAURPL-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURPL-01A-01D_TARGET-30-PAURPL-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURPL-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURPL-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURPL-10A-01D	DNA	EFO	SRS653960	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURPL-10A-01D A44505 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44505	SRX645906	"Specific Capture analysis of normal sample TARGET-30-PAURPL-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURPL-10A-01D A44505 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44505_1_lane_dupsFlagged.bam	SRR1506650	@dbgap@:reads/SRP012002/SRS653960/SRX645906/SRR1506650/SRR1506650.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURPL-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURUR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURUR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURUR-01A-01D_TARGET-30-PAURUR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURUR-01A-01D_TARGET-30-PAURUR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURUR-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURUR-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-01A-01D	DNA	EFO	SRS640954	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-01A-01D A44867 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44867	SRX609648	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURUR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-01A-01D A44867 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44867_1_lane_dupsFlagged.bam	SRR1423564	@dbgap@:reads/SRP012002/SRS640954/SRX609648/SRR1423564/SRR1423564.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURUR-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURUR-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURUR-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURUR-01A-01D_TARGET-30-PAURUR-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURUR-01A-01D_TARGET-30-PAURUR-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURUR-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURUR-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURUR-10A-01D	DNA	EFO	SRS640934	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURUR-10A-01D A44859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44859	SRX609628	"Specific Capture analysis of normal sample TARGET-30-PAURUR-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAURUR-10A-01D A44859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44859_1_lane_dupsFlagged.bam	SRR1423516	@dbgap@:reads/SRP012002/SRS640934/SRX609628/SRR1423516/SRR1423516.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURUR-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURYJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURYJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURYJ-01A-01D_TARGET-30-PAURYJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURYJ-01A-01D_TARGET-30-PAURYJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURYJ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURYJ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-01A-01D	DNA	EFO	SRS653952	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-01A-01D A44498 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44498	SRX645898	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-01A-01D A44498 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44498_1_lane_dupsFlagged.bam	SRR1506641	@dbgap@:reads/SRP012002/SRS653952/SRX645898/SRR1506641/SRR1506641.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURYJ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURYJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURYJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURYJ-01A-01D_TARGET-30-PAURYJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURYJ-01A-01D_TARGET-30-PAURYJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURYJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURYJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURYJ-10A-01D	DNA	EFO	SRS653986	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURYJ-10A-01D A44490 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44490	SRX645932	"Specific Capture analysis of normal sample TARGET-30-PAURYJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURYJ-10A-01D A44490 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44490_1_lane_dupsFlagged.bam	SRR1506662	@dbgap@:reads/SRP012002/SRS653986/SRX645932/SRR1506662/SRR1506662.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURYJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURZH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURZH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURZH-01A-01D_TARGET-30-PAURZH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURZH-01A-01D_TARGET-30-PAURZH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURZH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURZH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-01A-01D	DNA	EFO	SRS653975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-01A-01D A44466 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44466	SRX645921	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAURZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-01A-01D A44466 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44466_1_lane_dupsFlagged.bam	SRR1506642	@dbgap@:reads/SRP012002/SRS653975/SRX645921/SRR1506642/SRR1506642.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURZH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAURZH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAURZH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURZH-01A-01D_TARGET-30-PAURZH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAURZH-01A-01D_TARGET-30-PAURZH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAURZH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURZH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAURZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAURZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAURZH-10A-01D	DNA	EFO	SRS653956	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAURZH-10A-01D A44458 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44458	SRX645902	"Specific Capture analysis of normal sample TARGET-30-PAURZH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAURZH-10A-01D A44458 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44458_1_lane_dupsFlagged.bam	SRR1506645	@dbgap@:reads/SRP012002/SRS653956/SRX645902/SRR1506645/SRR1506645.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAURZH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUSJB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUSJB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSJB-01A-01D_TARGET-30-PAUSJB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSJB-01A-01D_TARGET-30-PAUSJB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUSJB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSJB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-01A-01D	DNA	EFO	SRS653979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-01A-01D A44467 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44467	SRX645925	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-01A-01D A44467 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44467_1_lane_dupsFlagged.bam	SRR1506663	@dbgap@:reads/SRP012002/SRS653979/SRX645925/SRR1506663/SRR1506663.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSJB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUSJB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUSJB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSJB-01A-01D_TARGET-30-PAUSJB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSJB-01A-01D_TARGET-30-PAUSJB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUSJB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSJB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUSJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSJB-10A-01D	DNA	EFO	SRS653964	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSJB-10A-01D A44459 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44459	SRX645910	"Specific Capture analysis of normal sample TARGET-30-PAUSJB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUSJB-10A-01D A44459 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44459_1_lane_dupsFlagged.bam	SRR1506668	@dbgap@:reads/SRP012002/SRS653964/SRX645910/SRR1506668/SRR1506668.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSJB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUSXH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUSXH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSXH-01A-01D_TARGET-30-PAUSXH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSXH-01A-01D_TARGET-30-PAUSXH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUSXH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSXH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-01A-01D	DNA	EFO	SRS640924	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-01A-01D A44868 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44868	SRX609617	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUSXH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-01A-01D A44868 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44868_1_lane_dupsFlagged.bam	SRR1423557	@dbgap@:reads/SRP012002/SRS640924/SRX609617/SRR1423557/SRR1423557.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSXH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUSXH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUSXH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSXH-01A-01D_TARGET-30-PAUSXH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUSXH-01A-01D_TARGET-30-PAUSXH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUSXH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSXH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUSXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUSXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUSXH-10A-01D	DNA	EFO	SRS640985	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUSXH-10A-01D A44860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44860	SRX609677	"Specific Capture analysis of normal sample TARGET-30-PAUSXH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUSXH-10A-01D A44860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44860_1_lane_dupsFlagged.bam	SRR1423492	@dbgap@:reads/SRP012002/SRS640985/SRX609677/SRR1423492/SRR1423492.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUSXH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTKJ-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTKJ-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKJ-09A-01D_TARGET-30-PAUTKJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKJ-09A-01D_TARGET-30-PAUTKJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTKJ-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKJ-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-09A-01D	DNA	EFO	SRS653968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-09A-01D A44468 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44468	SRX645914	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKJ-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-09A-01D A44468 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44468_1_lane_dupsFlagged.bam	SRR1506655	@dbgap@:reads/SRP012002/SRS653968/SRX645914/SRR1506655/SRR1506655.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKJ-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTKJ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTKJ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKJ-09A-01D_TARGET-30-PAUTKJ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKJ-09A-01D_TARGET-30-PAUTKJ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTKJ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKJ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKJ-10A-01D	DNA	EFO	SRS653991	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKJ-10A-01D A44460 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44460	SRX645937	"Specific Capture analysis of normal sample TARGET-30-PAUTKJ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTKJ-10A-01D A44460 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44460_1_lane_dupsFlagged.bam	SRR1506675	@dbgap@:reads/SRP012002/SRS653991/SRX645937/SRR1506675/SRR1506675.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKJ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTKP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTKP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKP-01A-01D_TARGET-30-PAUTKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKP-01A-01D_TARGET-30-PAUTKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTKP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-01A-01D	DNA	EFO	SRS640897	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-01A-01D A44869 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44869	SRX609590	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-01A-01D A44869 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44869_1_lane_dupsFlagged.bam	SRR1423494	@dbgap@:reads/SRP012002/SRS640897/SRX609590/SRR1423494/SRR1423494.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTKP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTKP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKP-01A-01D_TARGET-30-PAUTKP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTKP-01A-01D_TARGET-30-PAUTKP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTKP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTKP-10A-01D	DNA	EFO	SRS640982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTKP-10A-01D A44861 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44861	SRX609675	"Specific Capture analysis of normal sample TARGET-30-PAUTKP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUTKP-10A-01D A44861 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44861_1_lane_dupsFlagged.bam	SRR1423491	@dbgap@:reads/SRP012002/SRS640982/SRX609675/SRR1423491/SRR1423491.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTKP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTLP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTLP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTLP-01A-01D_TARGET-30-PAUTLP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTLP-01A-01D_TARGET-30-PAUTLP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTLP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTLP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-01A-01D	DNA	EFO	SRS640890	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-01A-01D A44469 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44469	SRX609583	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTLP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-01A-01D A44469 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44469_1_lane_dupsFlagged.bam	SRR1423523	@dbgap@:reads/SRP012002/SRS640890/SRX609583/SRR1423523/SRR1423523.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTLP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTLP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTLP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTLP-01A-01D_TARGET-30-PAUTLP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTLP-01A-01D_TARGET-30-PAUTLP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTLP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTLP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTLP-10A-01D	DNA	EFO	SRS640971	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTLP-10A-01D A44461 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44461	SRX609665	"Specific Capture analysis of normal sample TARGET-30-PAUTLP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTLP-10A-01D A44461 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44461_1_lane_dupsFlagged.bam	SRR1423561	@dbgap@:reads/SRP012002/SRS640971/SRX609665/SRR1423561/SRR1423561.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTLP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTVX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTVX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTVX-01A-01D_TARGET-30-PAUTVX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTVX-01A-01D_TARGET-30-PAUTVX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTVX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTVX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-01A-01D	DNA	EFO	SRS640975	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-01A-01D A44470 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44470	SRX609668	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUTVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-01A-01D A44470 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44470_1_lane_dupsFlagged.bam	SRR1423477	@dbgap@:reads/SRP012002/SRS640975/SRX609668/SRR1423477/SRR1423477.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTVX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUTVX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUTVX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTVX-01A-01D_TARGET-30-PAUTVX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUTVX-01A-01D_TARGET-30-PAUTVX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUTVX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTVX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUTVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUTVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUTVX-10A-01D	DNA	EFO	SRS640953	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUTVX-10A-01D A44462 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44462	SRX609646	"Specific Capture analysis of normal sample TARGET-30-PAUTVX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUTVX-10A-01D A44462 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44462_1_lane_dupsFlagged.bam	SRR1423528	@dbgap@:reads/SRP012002/SRS640953/SRX609646/SRR1423528/SRR1423528.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUTVX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUGT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUGT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUGT-01A-01D_TARGET-30-PAUUGT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUGT-01A-01D_TARGET-30-PAUUGT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUGT-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUGT-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-01A-01D	DNA	EFO	SRS640910	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-01A-01D A44870 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44870	SRX609603	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUGT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-01A-01D A44870 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44870_1_lane_dupsFlagged.bam	SRR1423568	@dbgap@:reads/SRP012002/SRS640910/SRX609603/SRR1423568/SRR1423568.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUGT-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUGT-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUGT-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUGT-01A-01D_TARGET-30-PAUUGT-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUGT-01A-01D_TARGET-30-PAUUGT-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUGT-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUGT-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUGT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUGT-10A-01D	DNA	EFO	SRS640875	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUGT-10A-01D A44862 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44862	SRX609568	"Specific Capture analysis of normal sample TARGET-30-PAUUGT-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUGT-10A-01D A44862 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44862_1_lane_dupsFlagged.bam	SRR1423558	@dbgap@:reads/SRP012002/SRS640875/SRX609568/SRR1423558/SRR1423558.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUGT-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUHD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUHD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUHD-01A-01D_TARGET-30-PAUUHD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUHD-01A-01D_TARGET-30-PAUUHD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUHD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUHD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-01A-01D	DNA	EFO	SRS640945	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-01A-01D A44871 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44871	SRX609638	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUUHD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-01A-01D A44871 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44871_1_lane_dupsFlagged.bam	SRR1423542	@dbgap@:reads/SRP012002/SRS640945/SRX609638/SRR1423542/SRR1423542.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUHD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUHD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUHD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUHD-01A-01D_TARGET-30-PAUUHD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUHD-01A-01D_TARGET-30-PAUUHD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUHD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUHD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUHD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUHD-10A-01D	DNA	EFO	SRS640939	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUHD-10A-01D A44863 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44863	SRX609631	"Specific Capture analysis of normal sample TARGET-30-PAUUHD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUHD-10A-01D A44863 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44863_1_lane_dupsFlagged.bam	SRR1423526	@dbgap@:reads/SRP012002/SRS640939/SRX609631/SRR1423526/SRR1423526.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUHD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUZU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUZU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUZU-01A-01D_TARGET-30-PAUUZU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUZU-01A-01D_TARGET-30-PAUUZU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUZU-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUZU-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-01A-01D	DNA	EFO	SRS640980	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-01A-01D A44872 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44872	SRX609673	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUUZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-01A-01D A44872 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44872_1_lane_dupsFlagged.bam	SRR1423518	@dbgap@:reads/SRP012002/SRS640980/SRX609673/SRR1423518/SRR1423518.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUZU-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUUZU-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUUZU-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUZU-01A-01D_TARGET-30-PAUUZU-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUUZU-01A-01D_TARGET-30-PAUUZU-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUUZU-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUZU-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUUZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUUZU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUUZU-10A-01D	DNA	EFO	SRS640959	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUUZU-10A-01D A44864 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44864	SRX609652	"Specific Capture analysis of normal sample TARGET-30-PAUUZU-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUUZU-10A-01D A44864 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44864_1_lane_dupsFlagged.bam	SRR1423544	@dbgap@:reads/SRP012002/SRS640959/SRX609652/SRR1423544/SRR1423544.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUUZU-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUVVE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUVVE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUVVE-01A-01D_TARGET-30-PAUVVE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUVVE-01A-01D_TARGET-30-PAUVVE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUVVE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUVVE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-01A-01D	DNA	EFO	SRS653982	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-01A-01D A44499 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44499	SRX645928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUVVE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-01A-01D A44499 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44499_1_lane_dupsFlagged.bam	SRR1506637	@dbgap@:reads/SRP012002/SRS653982/SRX645928/SRR1506637/SRR1506637.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUVVE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUVVE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUVVE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUVVE-01A-01D_TARGET-30-PAUVVE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUVVE-01A-01D_TARGET-30-PAUVVE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUVVE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUVVE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUVVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUVVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUVVE-10A-01D	DNA	EFO	SRS653961	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUVVE-10A-01D A44491 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44491	SRX645907	"Specific Capture analysis of normal sample TARGET-30-PAUVVE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-30-PAUVVE-10A-01D A44491 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44491_1_lane_dupsFlagged.bam	SRR1506664	@dbgap@:reads/SRP012002/SRS653961/SRX645907/SRR1506664/SRR1506664.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUVVE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWDK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWDK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWDK-01A-01D_TARGET-30-PAUWDK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWDK-01A-01D_TARGET-30-PAUWDK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWDK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWDK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-01A-01D	DNA	EFO	SRS641078	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-01A-01D A44962 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44962	SRX609996	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWDK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-01A-01D A44962 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44962_1_lane_dupsFlagged.bam	SRR1424235	@dbgap@:reads/SRP012002/SRS641078/SRX609996/SRR1424235/SRR1424235.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWDK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWDK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWDK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWDK-01A-01D_TARGET-30-PAUWDK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWDK-01A-01D_TARGET-30-PAUWDK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWDK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWDK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWDK-10A-01D	DNA	EFO	SRS641024	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWDK-10A-01D A44954 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44954	SRX609942	"Specific Capture analysis of normal sample TARGET-30-PAUWDK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWDK-10A-01D A44954 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44954_1_lane_dupsFlagged.bam	SRR1424258	@dbgap@:reads/SRP012002/SRS641024/SRX609942/SRR1424258/SRR1424258.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWDK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWED-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWED-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWED-01A-01D_TARGET-30-PAUWED-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWED-01A-01D_TARGET-30-PAUWED-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWED-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWED-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-01A-01D	DNA	EFO	SRS641058	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-01A-01D A44948 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44948	SRX609976	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-01A-01D A44948 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44948_1_lane_dupsFlagged.bam	SRR1424281	@dbgap@:reads/SRP012002/SRS641058/SRX609976/SRR1424281/SRR1424281.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWED-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWED-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWED-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWED-01A-01D_TARGET-30-PAUWED-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWED-01A-01D_TARGET-30-PAUWED-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWED-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWED-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWED-10A-01D	DNA	EFO	SRS641046	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWED-10A-01D A44940 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44940	SRX609964	"Specific Capture analysis of normal sample TARGET-30-PAUWED-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWED-10A-01D A44940 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44940_1_lane_dupsFlagged.bam	SRR1424197	@dbgap@:reads/SRP012002/SRS641046/SRX609964/SRR1424197/SRR1424197.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWED-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWEV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWEV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWEV-01A-01D_TARGET-30-PAUWEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWEV-01A-01D_TARGET-30-PAUWEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWEV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWEV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-01A-01D	DNA	EFO	SRS641025	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-01A-01D A44961 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44961	SRX609943	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWEV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-01A-01D A44961 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44961_1_lane_dupsFlagged.bam	SRR1424203	@dbgap@:reads/SRP012002/SRS641025/SRX609943/SRR1424203/SRR1424203.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWEV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWEV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWEV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWEV-01A-01D_TARGET-30-PAUWEV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWEV-01A-01D_TARGET-30-PAUWEV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWEV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWEV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWEV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWEV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWEV-10A-01D	DNA	EFO	SRS641036	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWEV-10A-01D A44953 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44953	SRX609954	"Specific Capture analysis of normal sample TARGET-30-PAUWEV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWEV-10A-01D A44953 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44953_1_lane_dupsFlagged.bam	SRR1424202	@dbgap@:reads/SRP012002/SRS641036/SRX609954/SRR1424202/SRR1424202.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWEV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWFE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWFE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWFE-01A-01D_TARGET-30-PAUWFE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWFE-01A-01D_TARGET-30-PAUWFE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWFE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWFE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-01A-01D	DNA	EFO	SRS641063	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-01A-01D A44975 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44975	SRX609981	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUWFE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-01A-01D A44975 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44975_1_lane_dupsFlagged.bam	SRR1424288	@dbgap@:reads/SRP012002/SRS641063/SRX609981/SRR1424288/SRR1424288.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWFE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWFE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWFE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWFE-01A-01D_TARGET-30-PAUWFE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWFE-01A-01D_TARGET-30-PAUWFE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWFE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWFE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWFE-10A-01D	DNA	EFO	SRS641096	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWFE-10A-01D A44967 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44967	SRX610013	"Specific Capture analysis of normal sample TARGET-30-PAUWFE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUWFE-10A-01D A44967 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44967_1_lane_dupsFlagged.bam	SRR1424265	@dbgap@:reads/SRP012002/SRS641096/SRX610013/SRR1424265/SRR1424265.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWFE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWXY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWXY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWXY-01A-01D_TARGET-30-PAUWXY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWXY-01A-01D_TARGET-30-PAUWXY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWXY-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWXY-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-01A-01D	DNA	EFO	SRS641065	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-01A-01D A44957 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44957	SRX609983	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWXY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-01A-01D A44957 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44957_1_lane_dupsFlagged.bam	SRR1424224	@dbgap@:reads/SRP012002/SRS641065/SRX609983/SRR1424224/SRR1424224.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWXY-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWXY-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWXY-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWXY-01A-01D_TARGET-30-PAUWXY-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWXY-01A-01D_TARGET-30-PAUWXY-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWXY-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWXY-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWXY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWXY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWXY-10A-01D	DNA	EFO	SRS641056	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWXY-10A-01D A44949 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44949	SRX609974	"Specific Capture analysis of normal sample TARGET-30-PAUWXY-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWXY-10A-01D A44949 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44949_1_lane_dupsFlagged.bam	SRR1424261	@dbgap@:reads/SRP012002/SRS641056/SRX609974/SRR1424261/SRR1424261.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWXY-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWYM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWYM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWYM-01A-01D_TARGET-30-PAUWYM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWYM-01A-01D_TARGET-30-PAUWYM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWYM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWYM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-01A-01D	DNA	EFO	SRS641011	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-01A-01D A44881 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44881	SRX609929	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUWYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-01A-01D A44881 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44881_1_lane_dupsFlagged.bam	SRR1424266	@dbgap@:reads/SRP012002/SRS641011/SRX609929/SRR1424266/SRR1424266.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWYM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUWYM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUWYM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWYM-01A-01D_TARGET-30-PAUWYM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUWYM-01A-01D_TARGET-30-PAUWYM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUWYM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWYM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUWYM-10A-01D	DNA	EFO	SRS640968	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUWYM-10A-01D A44873 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44873	SRX609660	"Specific Capture analysis of normal sample TARGET-30-PAUWYM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUWYM-10A-01D A44873 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44873_1_lane_dupsFlagged.bam	SRR1423511	@dbgap@:reads/SRP012002/SRS640968/SRX609660/SRR1423511/SRR1423511.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUWYM-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXFZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXFZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXFZ-01A-01D_TARGET-30-PAUXFZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXFZ-01A-01D_TARGET-30-PAUXFZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXFZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXFZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-01A-01D	DNA	EFO	SRS641075	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-01A-01D A44977 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44977	SRX609993	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-01A-01D A44977 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44977_1_lane_dupsFlagged.bam	SRR1424262	@dbgap@:reads/SRP012002/SRS641075/SRX609993/SRR1424262/SRR1424262.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXFZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXFZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXFZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXFZ-01A-01D_TARGET-30-PAUXFZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXFZ-01A-01D_TARGET-30-PAUXFZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXFZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXFZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXFZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXFZ-10A-01D	DNA	EFO	SRS641012	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXFZ-10A-01D A44969 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44969	SRX609930	"Specific Capture analysis of normal sample TARGET-30-PAUXFZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUXFZ-10A-01D A44969 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44969_1_lane_dupsFlagged.bam	SRR1424263	@dbgap@:reads/SRP012002/SRS641012/SRX609930/SRR1424263/SRR1424263.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXFZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXIW-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXIW-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXIW-09A-01D_TARGET-30-PAUXIW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXIW-09A-01D_TARGET-30-PAUXIW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXIW-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXIW-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-09A-01D	DNA	EFO	SRS641111	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-09A-01D A44882 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44882	SRX610029	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXIW-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-09A-01D A44882 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44882_1_lane_dupsFlagged.bam	SRR1424233	@dbgap@:reads/SRP012002/SRS641111/SRX610029/SRR1424233/SRR1424233.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXIW-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXIW-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXIW-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXIW-09A-01D_TARGET-30-PAUXIW-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXIW-09A-01D_TARGET-30-PAUXIW-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXIW-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXIW-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXIW-10A-01D	DNA	EFO	SRS640944	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXIW-10A-01D A44874 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44874	SRX609637	"Specific Capture analysis of normal sample TARGET-30-PAUXIW-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXIW-10A-01D A44874 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44874_1_lane_dupsFlagged.bam	SRR1423560	@dbgap@:reads/SRP012002/SRS640944/SRX609637/SRR1423560/SRR1423560.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXIW-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXSZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXSZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXSZ-01A-01D_TARGET-30-PAUXSZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXSZ-01A-01D_TARGET-30-PAUXSZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXSZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXSZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-01A-01D	DNA	EFO	SRS641032	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-01A-01D A44883 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44883	SRX609950	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXSZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-01A-01D A44883 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44883_1_lane_dupsFlagged.bam	SRR1424285	@dbgap@:reads/SRP012002/SRS641032/SRX609950/SRR1424285/SRR1424285.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXSZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXSZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXSZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXSZ-01A-01D_TARGET-30-PAUXSZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXSZ-01A-01D_TARGET-30-PAUXSZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXSZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXSZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXSZ-10A-01D	DNA	EFO	SRS640928	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXSZ-10A-01D A44875 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44875	SRX609621	"Specific Capture analysis of normal sample TARGET-30-PAUXSZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXSZ-10A-01D A44875 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44875_1_lane_dupsFlagged.bam	SRR1423493	@dbgap@:reads/SRP012002/SRS640928/SRX609621/SRR1423493/SRR1423493.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXSZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXUP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXUP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXUP-01A-01D_TARGET-30-PAUXUP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXUP-01A-01D_TARGET-30-PAUXUP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXUP-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXUP-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-01A-01D	DNA	EFO	SRS641085	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-01A-01D A44884 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44884	SRX610003	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUXUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-01A-01D A44884 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44884_1_lane_dupsFlagged.bam	SRR1424278	@dbgap@:reads/SRP012002/SRS641085/SRX610003/SRR1424278/SRR1424278.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXUP-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUXUP-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUXUP-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXUP-01A-01D_TARGET-30-PAUXUP-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUXUP-01A-01D_TARGET-30-PAUXUP-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUXUP-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXUP-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUXUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUXUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUXUP-10A-01D	DNA	EFO	SRS640978	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUXUP-10A-01D A44876 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44876	SRX609671	"Specific Capture analysis of normal sample TARGET-30-PAUXUP-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUXUP-10A-01D A44876 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44876_1_lane_dupsFlagged.bam	SRR1423481	@dbgap@:reads/SRP012002/SRS640978/SRX609671/SRR1423481/SRR1423481.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUXUP-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUYDE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUYDE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYDE-01A-01D_TARGET-30-PAUYDE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYDE-01A-01D_TARGET-30-PAUYDE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUYDE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYDE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-01A-01D	DNA	EFO	SRS641053	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-01A-01D A44885 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44885	SRX609971	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-01A-01D A44885 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44885_1_lane_dupsFlagged.bam	SRR1424222	@dbgap@:reads/SRP012002/SRS641053/SRX609971/SRR1424222/SRR1424222.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYDE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUYDE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUYDE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYDE-01A-01D_TARGET-30-PAUYDE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYDE-01A-01D_TARGET-30-PAUYDE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUYDE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYDE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUYDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYDE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYDE-10A-01D	DNA	EFO	SRS640979	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYDE-10A-01D A44877 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44877	SRX609672	"Specific Capture analysis of normal sample TARGET-30-PAUYDE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUYDE-10A-01D A44877 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44877_1_lane_dupsFlagged.bam	SRR1423469	@dbgap@:reads/SRP012002/SRS640979/SRX609672/SRR1423469/SRR1423469.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYDE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUYXX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUYXX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYXX-01A-01D_TARGET-30-PAUYXX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYXX-01A-01D_TARGET-30-PAUYXX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUYXX-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYXX-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-01A-01D	DNA	EFO	SRS641052	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-01A-01D A44947 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44947	SRX609970	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUYXX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-01A-01D A44947 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44947_1_lane_dupsFlagged.bam	SRR1424230	@dbgap@:reads/SRP012002/SRS641052/SRX609970/SRR1424230/SRR1424230.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYXX-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUYXX-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUYXX-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYXX-01A-01D_TARGET-30-PAUYXX-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUYXX-01A-01D_TARGET-30-PAUYXX-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUYXX-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYXX-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUYXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUYXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUYXX-10A-01D	DNA	EFO	SRS641066	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUYXX-10A-01D A44939 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44939	SRX609984	"Specific Capture analysis of normal sample TARGET-30-PAUYXX-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUYXX-10A-01D A44939 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44939_1_lane_dupsFlagged.bam	SRR1424239	@dbgap@:reads/SRP012002/SRS641066/SRX609984/SRR1424239/SRR1424239.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUYXX-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZAE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZAE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZAE-01A-01D_TARGET-30-PAUZAE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZAE-01A-01D_TARGET-30-PAUZAE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZAE-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZAE-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-01A-01D	DNA	EFO	SRS641038	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-01A-01D A44886 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44886	SRX609956	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-01A-01D A44886 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44886_1_lane_dupsFlagged.bam	SRR1424274	@dbgap@:reads/SRP012002/SRS641038/SRX609956/SRR1424274/SRR1424274.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZAE-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZAE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZAE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZAE-01A-01D_TARGET-30-PAUZAE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZAE-01A-01D_TARGET-30-PAUZAE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZAE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZAE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZAE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZAE-10A-01D	DNA	EFO	SRS640929	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZAE-10A-01D A44878 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44878	SRX609622	"Specific Capture analysis of normal sample TARGET-30-PAUZAE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZAE-10A-01D A44878 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44878_1_lane_dupsFlagged.bam	SRR1423504	@dbgap@:reads/SRP012002/SRS640929/SRX609622/SRR1423504/SRR1423504.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZAE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZMG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZMG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZMG-01A-01D_TARGET-30-PAUZMG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZMG-01A-01D_TARGET-30-PAUZMG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZMG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZMG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-01A-01D	DNA	EFO	SRS641035	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-01A-01D A44958 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44958	SRX609953	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-01A-01D A44958 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44958_1_lane_dupsFlagged.bam	SRR1424241	@dbgap@:reads/SRP012002/SRS641035/SRX609953/SRR1424241/SRR1424241.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZMG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZMG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZMG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZMG-01A-01D_TARGET-30-PAUZMG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZMG-01A-01D_TARGET-30-PAUZMG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZMG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZMG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZMG-10A-01D	DNA	EFO	SRS641043	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZMG-10A-01D A44950 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44950	SRX609961	"Specific Capture analysis of normal sample TARGET-30-PAUZMG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZMG-10A-01D A44950 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44950_1_lane_dupsFlagged.bam	SRR1424279	@dbgap@:reads/SRP012002/SRS641043/SRX609961/SRR1424279/SRR1424279.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZMG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZRC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZRC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZRC-01A-01D_TARGET-30-PAUZRC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZRC-01A-01D_TARGET-30-PAUZRC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZRC-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZRC-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-01A-01D	DNA	EFO	SRS641002	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-01A-01D A44959 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44959	SRX609920	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-01A-01D A44959 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44959_1_lane_dupsFlagged.bam	SRR1424192	@dbgap@:reads/SRP012002/SRS641002/SRX609920/SRR1424192/SRR1424192.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZRC-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZRC-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZRC-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZRC-01A-01D_TARGET-30-PAUZRC-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZRC-01A-01D_TARGET-30-PAUZRC-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZRC-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZRC-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZRC-10A-01D	DNA	EFO	SRS641055	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZRC-10A-01D A44951 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44951	SRX609973	"Specific Capture analysis of normal sample TARGET-30-PAUZRC-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZRC-10A-01D A44951 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44951_1_lane_dupsFlagged.bam	SRR1424223	@dbgap@:reads/SRP012002/SRS641055/SRX609973/SRR1424223/SRR1424223.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZRC-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZSB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZSB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZSB-01A-01D_TARGET-30-PAUZSB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZSB-01A-01D_TARGET-30-PAUZSB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZSB-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZSB-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-01A-01D	DNA	EFO	SRS641006	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-01A-01D A44887 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44887	SRX609924	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAUZSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-01A-01D A44887 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44887_1_lane_dupsFlagged.bam	SRR1424276	@dbgap@:reads/SRP012002/SRS641006/SRX609924/SRR1424276/SRR1424276.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZSB-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZSB-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZSB-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZSB-01A-01D_TARGET-30-PAUZSB-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZSB-01A-01D_TARGET-30-PAUZSB-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZSB-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZSB-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZSB-10A-01D	DNA	EFO	SRS641050	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZSB-10A-01D A44879 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44879	SRX609969	"Specific Capture analysis of normal sample TARGET-30-PAUZSB-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZSB-10A-01D A44879 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44879_1_lane_dupsFlagged.bam	SRR1424204	@dbgap@:reads/SRP012002/SRS641050/SRX609969/SRR1424204/SRR1424204.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZSB-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZTF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZTF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZTF-01A-01D_TARGET-30-PAUZTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZTF-01A-01D_TARGET-30-PAUZTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZTF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZTF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-01A-01D	DNA	EFO	SRS641033	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-01A-01D A44960 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44960	SRX609951	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZTF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-01A-01D A44960 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44960_1_lane_dupsFlagged.bam	SRR1424213	@dbgap@:reads/SRP012002/SRS641033/SRX609951/SRR1424213/SRR1424213.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZTF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZTF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZTF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZTF-01A-01D_TARGET-30-PAUZTF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZTF-01A-01D_TARGET-30-PAUZTF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZTF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZTF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZTF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZTF-10A-01D	DNA	EFO	SRS641028	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZTF-10A-01D A44952 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44952	SRX609947	"Specific Capture analysis of normal sample TARGET-30-PAUZTF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAUZTF-10A-01D A44952 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44952_1_lane_dupsFlagged.bam	SRR1424187	@dbgap@:reads/SRP012002/SRS641028/SRX609947/SRR1424187/SRR1424187.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZTF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZZI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZZI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZZI-01A-01D_TARGET-30-PAUZZI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZZI-01A-01D_TARGET-30-PAUZZI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZZI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZZI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-01A-01D	DNA	EFO	SRS641026	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-01A-01D A44888 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44888	SRX609944	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAUZZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-01A-01D A44888 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44888_1_lane_dupsFlagged.bam	SRR1424251	@dbgap@:reads/SRP012002/SRS641026/SRX609944/SRR1424251/SRR1424251.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZZI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAUZZI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAUZZI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZZI-01A-01D_TARGET-30-PAUZZI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAUZZI-01A-01D_TARGET-30-PAUZZI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAUZZI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZZI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAUZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAUZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAUZZI-10A-01D	DNA	EFO	SRS641076	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAUZZI-10A-01D A44880 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44880	SRX609994	"Specific Capture analysis of normal sample TARGET-30-PAUZZI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAUZZI-10A-01D A44880 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44880_1_lane_dupsFlagged.bam	SRR1424237	@dbgap@:reads/SRP012002/SRS641076/SRX609994/SRR1424237/SRR1424237.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAUZZI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVABN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVABN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVABN-01A-01D_TARGET-30-PAVABN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVABN-01A-01D_TARGET-30-PAVABN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVABN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVABN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-01A-01D	DNA	EFO	SRS641112	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-01A-01D A44895 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44895	SRX610030	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVABN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-01A-01D A44895 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44895_1_lane_dupsFlagged.bam	SRR1424201	@dbgap@:reads/SRP012002/SRS641112/SRX610030/SRR1424201/SRR1424201.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVABN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVABN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVABN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVABN-01A-01D_TARGET-30-PAVABN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVABN-01A-01D_TARGET-30-PAVABN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVABN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVABN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVABN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVABN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVABN-10A-01D	DNA	EFO	SRS641016	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVABN-10A-01D A44889 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44889	SRX609934	"Specific Capture analysis of normal sample TARGET-30-PAVABN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVABN-10A-01D A44889 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44889_1_lane_dupsFlagged.bam	SRR1424284	@dbgap@:reads/SRP012002/SRS641016/SRX609934/SRR1424284/SRR1424284.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVABN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVAGS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVAGS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAGS-01A-01D_TARGET-30-PAVAGS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAGS-01A-01D_TARGET-30-PAVAGS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVAGS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAGS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-01A-01D	DNA	EFO	SRS641084	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-01A-01D A44896 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44896	SRX610002	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVAGS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-01A-01D A44896 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44896_1_lane_dupsFlagged.bam	SRR1424256	@dbgap@:reads/SRP012002/SRS641084/SRX610002/SRR1424256/SRR1424256.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAGS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVAGS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVAGS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAGS-01A-01D_TARGET-30-PAVAGS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAGS-01A-01D_TARGET-30-PAVAGS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVAGS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAGS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAGS-10A-01D	DNA	EFO	SRS641109	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAGS-10A-01D A44890 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44890	SRX610027	"Specific Capture analysis of normal sample TARGET-30-PAVAGS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAGS-10A-01D A44890 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44890_1_lane_dupsFlagged.bam	SRR1424275	@dbgap@:reads/SRP012002/SRS641109/SRX610027/SRR1424275/SRR1424275.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAGS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVALS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVALS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVALS-01A-01D_TARGET-30-PAVALS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVALS-01A-01D_TARGET-30-PAVALS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVALS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVALS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-01A-01D	DNA	EFO	SRS641015	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-01A-01D A44897 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	251	A44897	SRX609933	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVALS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-01A-01D A44897 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44897_1_lane_dupsFlagged.bam	SRR1424210	@dbgap@:reads/SRP012002/SRS641015/SRX609933/SRR1424210/SRR1424210.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVALS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVALS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVALS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVALS-01A-01D_TARGET-30-PAVALS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVALS-01A-01D_TARGET-30-PAVALS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVALS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVALS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVALS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVALS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVALS-10A-01D	DNA	EFO	SRS641021	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVALS-10A-01D A44891 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44891	SRX609939	"Specific Capture analysis of normal sample TARGET-30-PAVALS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVALS-10A-01D A44891 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44891_1_lane_dupsFlagged.bam	SRR1424271	@dbgap@:reads/SRP012002/SRS641021/SRX609939/SRR1424271/SRR1424271.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVALS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVAYF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVAYF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAYF-01A-01D_TARGET-30-PAVAYF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAYF-01A-01D_TARGET-30-PAVAYF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVAYF-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAYF-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-01A-01D	DNA	EFO	SRS641060	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-01A-01D A44898 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44898	SRX609979	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVAYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-01A-01D A44898 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44898_1_lane_dupsFlagged.bam	SRR1424214	@dbgap@:reads/SRP012002/SRS641060/SRX609979/SRR1424214/SRR1424214.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAYF-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVAYF-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVAYF-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAYF-01A-01D_TARGET-30-PAVAYF-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVAYF-01A-01D_TARGET-30-PAVAYF-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVAYF-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAYF-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVAYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVAYF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVAYF-10A-01D	DNA	EFO	SRS641062	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVAYF-10A-01D A44892 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44892	SRX609980	"Specific Capture analysis of normal sample TARGET-30-PAVAYF-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVAYF-10A-01D A44892 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44892_1_lane_dupsFlagged.bam	SRR1424270	@dbgap@:reads/SRP012002/SRS641062/SRX609980/SRR1424270/SRR1424270.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVAYF-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCGD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCGD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCGD-01A-01D_TARGET-30-PAVCGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCGD-01A-01D_TARGET-30-PAVCGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCGD-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCGD-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-01A-01D	DNA	EFO	SRS641064	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-01A-01D A44899 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44899	SRX609982	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCGD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-01A-01D A44899 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44899_1_lane_dupsFlagged.bam	SRR1424240	@dbgap@:reads/SRP012002/SRS641064/SRX609982/SRR1424240/SRR1424240.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCGD-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCGD-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCGD-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCGD-01A-01D_TARGET-30-PAVCGD-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCGD-01A-01D_TARGET-30-PAVCGD-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCGD-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCGD-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCGD-10A-01D	DNA	EFO	SRS641097	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCGD-10A-01D A44893 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44893	SRX610015	"Specific Capture analysis of normal sample TARGET-30-PAVCGD-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCGD-10A-01D A44893 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44893_1_lane_dupsFlagged.bam	SRR1424211	@dbgap@:reads/SRP012002/SRS641097/SRX610015/SRR1424211/SRR1424211.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCGD-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCHH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCHH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCHH-01A-01D_TARGET-30-PAVCHH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCHH-01A-01D_TARGET-30-PAVCHH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCHH-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCHH-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-01A-01D	DNA	EFO	SRS641014	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-01A-01D A44900 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	258	A44900	SRX609932	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-01A-01D A44900 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44900_1_lane_dupsFlagged.bam	SRR1424198	@dbgap@:reads/SRP012002/SRS641014/SRX609932/SRR1424198/SRR1424198.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCHH-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCHH-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCHH-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCHH-01A-01D_TARGET-30-PAVCHH-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCHH-01A-01D_TARGET-30-PAVCHH-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCHH-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCHH-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCHH-10A-01D	DNA	EFO	SRS641057	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCHH-10A-01D A44894 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	268	A44894	SRX609975	"Specific Capture analysis of normal sample TARGET-30-PAVCHH-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCHH-10A-01D A44894 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44894_1_lane_dupsFlagged.bam	SRR1424194	@dbgap@:reads/SRP012002/SRS641057/SRX609975/SRR1424194/SRR1424194.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCHH-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCJZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCJZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCJZ-01A-01D_TARGET-30-PAVCJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCJZ-01A-01D_TARGET-30-PAVCJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCJZ-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCJZ-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-01A-01D	DNA	EFO	SRS641079	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-01A-01D A44909 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44909	SRX609997	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-01A-01D A44909 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44909_1_lane_dupsFlagged.bam	SRR1424200	@dbgap@:reads/SRP012002/SRS641079/SRX609997/SRR1424200/SRR1424200.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCJZ-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCJZ-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCJZ-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCJZ-01A-01D_TARGET-30-PAVCJZ-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCJZ-01A-01D_TARGET-30-PAVCJZ-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCJZ-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCJZ-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCJZ-10A-01D	DNA	EFO	SRS641107	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCJZ-10A-01D A44901 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44901	SRX610025	"Specific Capture analysis of normal sample TARGET-30-PAVCJZ-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCJZ-10A-01D A44901 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44901_1_lane_dupsFlagged.bam	SRR1424243	@dbgap@:reads/SRP012002/SRS641107/SRX610025/SRR1424243/SRR1424243.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCJZ-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCKK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCKK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCKK-01A-01D_TARGET-30-PAVCKK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCKK-01A-01D_TARGET-30-PAVCKK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCKK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCKK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-01A-01D	DNA	EFO	SRS641083	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-01A-01D A44910 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44910	SRX610001	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVCKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-01A-01D A44910 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44910_1_lane_dupsFlagged.bam	SRR1424286	@dbgap@:reads/SRP012002/SRS641083/SRX610001/SRR1424286/SRR1424286.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCKK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCKK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCKK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCKK-01A-01D_TARGET-30-PAVCKK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCKK-01A-01D_TARGET-30-PAVCKK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCKK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCKK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCKK-10A-01D	DNA	EFO	SRS641095	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCKK-10A-01D A44902 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44902	SRX610014	"Specific Capture analysis of normal sample TARGET-30-PAVCKK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVCKK-10A-01D A44902 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44902_1_lane_dupsFlagged.bam	SRR1424259	@dbgap@:reads/SRP012002/SRS641095/SRX610014/SRR1424259/SRR1424259.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCKK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCLI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCLI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCLI-01A-01D_TARGET-30-PAVCLI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCLI-01A-01D_TARGET-30-PAVCLI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCLI-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCLI-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-01A-01D	DNA	EFO	SRS641034	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-01A-01D A44911 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44911	SRX609952	"Specific Capture analysis of Nodular Ganglioneuroblastoma sample TARGET-30-PAVCLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-01A-01D A44911 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44911_1_lane_dupsFlagged.bam	SRR1424249	@dbgap@:reads/SRP012002/SRS641034/SRX609952/SRR1424249/SRR1424249.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCLI-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVCLI-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVCLI-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCLI-01A-01D_TARGET-30-PAVCLI-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVCLI-01A-01D_TARGET-30-PAVCLI-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVCLI-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCLI-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVCLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVCLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVCLI-10A-01D	DNA	EFO	SRS641098	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVCLI-10A-01D A44903 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44903	SRX610016	"Specific Capture analysis of normal sample TARGET-30-PAVCLI-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVCLI-10A-01D A44903 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44903_1_lane_dupsFlagged.bam	SRR1424185	@dbgap@:reads/SRP012002/SRS641098/SRX610016/SRR1424185/SRR1424185.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVCLI-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDBS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDBS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDBS-01A-01D_TARGET-30-PAVDBS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDBS-01A-01D_TARGET-30-PAVDBS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDBS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDBS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-01A-01D	DNA	EFO	SRS641110	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-01A-01D A44912 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44912	SRX610028	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-01A-01D A44912 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44912_1_lane_dupsFlagged.bam	SRR1424269	@dbgap@:reads/SRP012002/SRS641110/SRX610028/SRR1424269/SRR1424269.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDBS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDBS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDBS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDBS-01A-01D_TARGET-30-PAVDBS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDBS-01A-01D_TARGET-30-PAVDBS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDBS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDBS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDBS-10A-01D	DNA	EFO	SRS641100	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDBS-10A-01D A44904 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44904	SRX610018	"Specific Capture analysis of normal sample TARGET-30-PAVDBS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDBS-10A-01D A44904 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44904_1_lane_dupsFlagged.bam	SRR1424181	@dbgap@:reads/SRP012002/SRS641100/SRX610018/SRR1424181/SRR1424181.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDBS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDGG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDGG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDGG-01A-01D_TARGET-30-PAVDGG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDGG-01A-01D_TARGET-30-PAVDGG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDGG-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDGG-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-01A-01D	DNA	EFO	SRS641089	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-01A-01D A44913 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44913	SRX610007	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDGG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-01A-01D A44913 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44913_1_lane_dupsFlagged.bam	SRR1424238	@dbgap@:reads/SRP012002/SRS641089/SRX610007/SRR1424238/SRR1424238.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDGG-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDGG-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDGG-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDGG-01A-01D_TARGET-30-PAVDGG-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDGG-01A-01D_TARGET-30-PAVDGG-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDGG-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDGG-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDGG-10A-01D	DNA	EFO	SRS641004	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDGG-10A-01D A44905 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44905	SRX609922	"Specific Capture analysis of normal sample TARGET-30-PAVDGG-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDGG-10A-01D A44905 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44905_1_lane_dupsFlagged.bam	SRR1424246	@dbgap@:reads/SRP012002/SRS641004/SRX609922/SRR1424246/SRR1424246.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDGG-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDNK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDNK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDNK-01A-01D_TARGET-30-PAVDNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDNK-01A-01D_TARGET-30-PAVDNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDNK-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDNK-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-01A-01D	DNA	EFO	SRS641069	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-01A-01D A44914 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44914	SRX609987	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-01A-01D A44914 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44914_1_lane_dupsFlagged.bam	SRR1424250	@dbgap@:reads/SRP012002/SRS641069/SRX609987/SRR1424250/SRR1424250.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDNK-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDNK-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDNK-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDNK-01A-01D_TARGET-30-PAVDNK-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDNK-01A-01D_TARGET-30-PAVDNK-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDNK-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDNK-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDNK-10A-01D	DNA	EFO	SRS641105	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDNK-10A-01D A44906 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44906	SRX610024	"Specific Capture analysis of normal sample TARGET-30-PAVDNK-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDNK-10A-01D A44906 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44906_1_lane_dupsFlagged.bam	SRR1424260	@dbgap@:reads/SRP012002/SRS641105/SRX610024/SRR1424260/SRR1424260.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDNK-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDPE-09A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDPE-09A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDPE-09A-01D_TARGET-30-PAVDPE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDPE-09A-01D_TARGET-30-PAVDPE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDPE-09A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDPE-09A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-09A-01D	DNA	EFO	SRS641019	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-09A-01D A44987 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44987	SRX609937	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDPE-09A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDPE-09A-01D A44987 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44987_1_lane_dupsFlagged.bam	SRR1424216	@dbgap@:reads/SRP012002/SRS641019/SRX609937/SRR1424216/SRR1424216.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDPE-09A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDPE-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDPE-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDPE-09A-01D_TARGET-30-PAVDPE-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDPE-09A-01D_TARGET-30-PAVDPE-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDPE-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDPE-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDPE-10A-01D	DNA	EFO	SRS641073	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDPE-10A-01D A44982 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44982	SRX609992	"Specific Capture analysis of normal sample TARGET-30-PAVDPE-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVDPE-10A-01D A44982 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44982_1_lane_dupsFlagged.bam	SRR1424226	@dbgap@:reads/SRP012002/SRS641073/SRX609992/SRR1424226/SRR1424226.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDPE-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDYS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDYS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDYS-01A-01D_TARGET-30-PAVDYS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDYS-01A-01D_TARGET-30-PAVDYS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDYS-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDYS-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-01A	organism part	EFO	Solid Tumor	NCIt	"Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-01A-01D	DNA	EFO	SRS641029	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-01A-01D A44980 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44980	SRX609946	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVDYS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-01A-01D A44980 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44980_1_lane_dupsFlagged.bam	SRR1424242	@dbgap@:reads/SRP012002/SRS641029/SRX609946/SRR1424242/SRR1424242.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDYS-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVDYS-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVDYS-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDYS-01A-01D_TARGET-30-PAVDYS-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVDYS-01A-01D_TARGET-30-PAVDYS-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVDYS-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDYS-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVDYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVDYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVDYS-10A-01D	DNA	EFO	SRS641093	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVDYS-10A-01D A44972 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44972	SRX610011	"Specific Capture analysis of normal sample TARGET-30-PAVDYS-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVDYS-10A-01D A44972 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44972_1_lane_dupsFlagged.bam	SRR1424196	@dbgap@:reads/SRP012002/SRS641093/SRX610011/SRR1424196/SRR1424196.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVDYS-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVEKN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVEKN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEKN-01A-01D_TARGET-30-PAVEKN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEKN-01A-01D_TARGET-30-PAVEKN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVEKN-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEKN-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-01A-01D	DNA	EFO	SRS641010	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-01A-01D A44988 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	249	A44988	SRX609928	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-01A-01D A44988 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44988_1_lane_dupsFlagged.bam	SRR1424190	@dbgap@:reads/SRP012002/SRS641010/SRX609928/SRR1424190/SRR1424190.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEKN-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVEKN-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVEKN-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEKN-01A-01D_TARGET-30-PAVEKN-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEKN-01A-01D_TARGET-30-PAVEKN-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVEKN-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEKN-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVEKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEKN-10A-01D	DNA	EFO	SRS641104	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEKN-10A-01D A44983 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44983	SRX610021	"Specific Capture analysis of normal sample TARGET-30-PAVEKN-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEKN-10A-01D A44983 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44983_1_lane_dupsFlagged.bam	SRR1424248	@dbgap@:reads/SRP012002/SRS641104/SRX610021/SRR1424248/SRR1424248.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEKN-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVETV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVETV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVETV-01A-01D_TARGET-30-PAVETV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVETV-01A-01D_TARGET-30-PAVETV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVETV-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVETV-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-01A-01D	DNA	EFO	SRS641054	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-01A-01D A44989 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	259	A44989	SRX609972	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVETV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-16	TARGET-30-PAVETV-01A-01D A44989 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44989_1_lane_dupsFlagged.bam	SRR1424289	@dbgap@:reads/SRP012002/SRS641054/SRX609972/SRR1424289/SRR1424289.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVETV-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVETV-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVETV-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVETV-01A-01D_TARGET-30-PAVETV-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVETV-01A-01D_TARGET-30-PAVETV-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVETV-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVETV-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVETV-10A-01D	DNA	EFO	SRS641017	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVETV-10A-01D A44984 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44984	SRX609935	"Specific Capture analysis of normal sample TARGET-30-PAVETV-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVETV-10A-01D A44984 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44984_1_lane_dupsFlagged.bam	SRR1424291	@dbgap@:reads/SRP012002/SRS641017/SRX609935/SRR1424291/SRR1424291.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVETV-10A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVEZM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVEZM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEZM-01A-01D_TARGET-30-PAVEZM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEZM-01A-01D_TARGET-30-PAVEZM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVEZM-01A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEZM-01A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-01A-01D	DNA	EFO	SRS641092	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-01A-01D A44990 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	256	A44990	SRX610010	"Specific Capture analysis of Neuroblastoma sample TARGET-30-PAVEZM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-01A-01D A44990 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44990_1_lane_dupsFlagged.bam	SRR1424227	@dbgap@:reads/SRP012002/SRS641092/SRX610010/SRR1424227/SRR1424227.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEZM-01A-01D.bam.cov.plot.pdf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-30-PAVEZM-10A-01D.capture_dna_normal.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-30-PAVEZM-10A-01D.format_1.2.capture_dna_normal.maf.txt	3
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEZM-01A-01D_TARGET-30-PAVEZM-10A-01D.capture_dna.somatic.indel.vcf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Strelka:01	TARGET-30-PAVEZM-01A-01D_TARGET-30-PAVEZM-10A-01D.capture_dna.somatic.snv.vcf	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	TARGET-30-PAVEZM-10A-01D.bam.cov.segments.seg	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEZM-10A-01D.bam.cov.cnvs.xls	3			
TARGET-30-PAVEZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Neuroblastoma	NCIt	Validation	TARGET-30-PAVEZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-GenomicTips:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-30-PAVEZM-10A-01D	DNA	EFO	SRS641088	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-30-PAVEZM-10A-01D A44985 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	262	A44985	SRX610006	"Specific Capture analysis of normal sample TARGET-30-PAVEZM-10A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-17	TARGET-30-PAVEZM-10A-01D A44985 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44985_1_lane_dupsFlagged.bam	SRR1424212	@dbgap@:reads/SRP012002/SRS641088/SRX610006/SRR1424212/SRR1424212.sra	2	GRCh37-lite	uhnresearch.ca:Protocol:TargetedCapture-CnvSegment-VisCap:01	purity_20__TARGET-30-PAVEZM-10A-01D.bam.cov.plot.pdf	3			
