Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	3208470	83364681	45631	0.0816
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	83364811	83369052	4	-0.8823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	83369598	98792172	9440	0.1418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	98792473	99172275	209	-0.0971
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	99172348	99173273	3	-0.8628
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	99174812	102176779	2035	-0.0616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102176835	102635379	167	-0.3471
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102635435	102653834	23	0.1023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102662935	142745296	10169	-0.1688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	145143007	158579249	5449	0.2794
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	158581381	162016145	2321	0.5974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	162069600	164963407	2304	0.2505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	164965617	165846973	664	0.5873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	165849887	189492225	14670	0.3177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	189494439	196475545	3977	0.0268
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	196481665	204496562	5094	0.3484
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	204606274	205327819	493	-0.1332
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	205328510	205328537	2	-1.6738
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	205334574	206568581	865	-0.1129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	206572358	214773635	5644	0.1246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	214773663	214943138	149	0.4985
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	214943466	219913515	3355	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	219918046	228170083	4723	0.3543
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	228170506	228256187	68	0.7036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	228256498	245880329	11506	0.3586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	474222	21678712	13713	0.0633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	21679365	21693598	2	-1.889
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	21696172	76891965	30967	0.0596
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	76892049	76897589	4	-1.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	76899832	187761538	55317	0.0432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	187779523	187781798	3	-1.2331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	187783039	242124735	31171	0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	526235	90568652	50879	-0.1217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	95217361	166504530	38868	0.1891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	166504968	166505608	2	-1.2591
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	166513373	199023074	16548	0.2624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	1043934	40963222	24685	-0.1069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	40963236	40967050	2	-2.0395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	40967092	189836143	77932	-0.1026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	967233	176357965	98615	-0.0481
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	176359975	176367394	2	-1.8062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	176368531	180293075	1781	-0.0937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	959281	78495697	42819	-0.1285
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	78503620	78882447	230	-0.5956
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	78884282	101833484	12427	-0.1349
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	101833937	102082323	172	-0.4873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	102082984	107171000	2934	-0.1397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	107171319	107416799	173	0.2345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	107416824	128491895	11910	-0.1378
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	128492541	128495762	2	-1.6183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	128496307	170745844	25697	-0.1439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	671810	15623058	7337	0.3678
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	15623232	15664703	35	0.1063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	15664985	72039564	30082	0.3971
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	72369889	73056510	233	0.0496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	73060356	91078406	8253	0.4234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	91082518	91913807	415	1.0369
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	91918331	95350898	2180	0.4191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	95351270	96674115	812	1.2616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	96674148	97726057	532	0.9509
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	97727620	99440127	720	1.3329
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	99443524	99947136	140	0.8915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	99955216	100393516	129	0.0724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100393526	100504464	53	0.7169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100505859	100928691	94	0.0496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100928910	101371654	207	0.5993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	101376119	104991321	1811	0.1124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	104991641	106406708	1020	0.6949
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	106409865	109967841	1970	0.1325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	109968004	110562334	311	0.8191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	111140597	115351601	2090	0.1461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	115358126	117983875	1554	0.8074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	117985056	119008215	495	0.1578
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	119020158	119719667	311	0.9876
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	119731289	158077879	20491	0.1221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	607667	87858448	47324	-0.1436
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	87858473	87858742	2	-2.5947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	87858962	99233851	6736	-0.1166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	99236072	99236499	2	-1.5961
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	99236512	145304484	27381	-0.1107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	779932	79454905	29813	-0.2904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	79455024	79455865	2	-1.4606
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	79456150	85793133	4292	-0.1116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	85793346	85800856	5	-1.1011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	85801131	140058573	33817	-0.1357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	10	405240	135075077	80755	-0.1457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	11	446120	133647740	77184	-0.1198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	760163	96445215	54105	0.0917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	96448243	96449248	2	-1.1988
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	96451194	131671419	19770	0.072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	18348806	75400554	32674	0.0559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	75400587	75400806	2	-1.4515
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	75404780	76603317	829	0.0373
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	76606045	76611957	3	2.2977
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	76612442	114005560	23077	0.0299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	14	19571208	105059083	49383	-0.1405
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	15	21238778	99701830	44477	-0.0379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	16	593460	69403572	28817	0.1993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	16	69408394	69757550	63	0.4404
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	16	69762695	87907437	11970	0.1962
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	17	933971	22294927	9623	-0.4169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	17	22295421	78510305	27331	0.0607
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	319586	18178188	8767	0.1366
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	18179719	26878815	5355	-0.2992
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	26880310	29231935	1515	0.1476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	29234265	46655560	10847	-0.299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	46656038	46816802	90	0.0681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	46818576	48645540	1314	-0.2878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	48658735	48728420	53	0.1021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	48729083	49619808	516	-0.3
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	49624248	55414945	3708	0.078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	55417228	58352555	1864	-0.2997
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	58353388	75210228	8573	0.0702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	19	235018	63570038	23944	0.1964
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	20	403764	61690281	37260	0.1851
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	14269492	32032308	11272	0.1008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	32036551	32037546	2	-1.0761
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	32040087	46503202	9293	-0.0399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	15803930	34521317	9123	0.1173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	34524573	34524630	2	-0.9837
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	34532427	47717016	7795	0.1011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	3167107	12581083	3323	0.0287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	12582454	28133562	7724	-0.2259
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	28133823	30783343	1466	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	31096228	31348583	204	-0.2135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	31350557	119685758	35253	0.0252
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	119686175	119686649	2	-2.4413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	119690426	154558783	15661	0.0336
