Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	51598	9250000	4696	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	9250070	9322226	53	0.5132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	9323121	12815095	1811	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	12832564	12849694	7	-0.8482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	12850443	16884256	2209	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	16884365	16929044	32	0.3138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	16949054	25455928	5359	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	25465715	25519533	27	-1.6457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	25519573	58492497	19036	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	58496146	58505914	13	0.4884
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	58515058	72541504	9726	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	72541524	72583736	45	-0.895
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	72584492	105822727	21038	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	105822742	105823898	11	0.9616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	105825578	110034497	2670	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	110034560	110041701	16	1.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	110044476	112491849	1957	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	112497488	112498520	17	-0.4874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	112498535	150822151	8045	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	150822330	150853218	35	1.485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	150857118	151026302	171	0.0427
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	151028547	151035324	37	0.4933
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	151040529	159775499	5277	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	159780383	159905104	47	-0.4858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	159905137	166031459	4896	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	166032807	166033543	4	-1.0716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	166035137	167483561	1112	-0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	167500598	167508390	7	-2.2062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	167509025	179419017	7757	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	179420057	179420232	2	-1.3986
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	179420498	194994473	10432	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	194997658	195068473	89	-0.3749
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	195068610	227877792	21891	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	227883479	227886819	3	-2.9248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	227887079	247191011	14056	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	2784	4181455	2986	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	4183562	4201042	37	0.3025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	4201387	7556824	2901	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	7560516	7564423	2	1.4152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	7564458	13626271	4401	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	13626446	13637499	7	-1.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	13639162	34373977	13675	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34377482	34379084	2	-1.523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34379471	34516482	86	-0.0232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34516862	34518254	4	-0.5644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34528971	34544573	5	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34552819	34590561	46	-0.5716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34590667	40844166	4646	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	40844256	40844942	2	1.3475
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	40845310	52595241	8396	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	52597429	52635046	41	0.6448
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	52641453	110195900	31820	0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	110197347	111114271	84	0.5596
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	111117134	208063157	58739	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	208063200	208067581	17	-0.8517
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	208067721	212889567	3042	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	212894794	212900070	25	-0.8508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	212900371	242738129	19068	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	35345	16214067	12947	0.0152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	16215560	16216183	6	-2.6184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	16216329	100419653	50865	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	100420474	100432004	38	0.3411
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	100432111	131243814	18743	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	131245549	131281425	47	0.337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	131281471	162998291	19609	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162998321	162998343	2	1.397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162998638	163990872	674	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	163990886	164106536	67	0.6303
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	164106547	164197211	77	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	164200421	164202256	2	-3.0376
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	164208853	194360596	19117	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194360656	194365597	19	-1.1107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194369129	196032677	1097	-0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196033063	196033281	3	-0.8318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196036103	196122605	62	0.0383
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196122635	196123134	4	-0.9231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196123769	196757361	316	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196760499	196960434	51	0.2797
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	196964365	199380515	1174	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	2281	5361204	2610	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	5361322	5371835	6	-0.7938
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	5374196	8979788	2573	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	8981401	9038409	44	0.4463
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9039367	9046107	10	-0.5503
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9046108	9088443	16	0.4957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9095185	9832514	547	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9832726	9845240	35	0.5422
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9847534	34442166	16972	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	34446701	34501120	47	0.4921
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	34506267	44700512	6643	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	44700609	44701092	4	-0.9315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	44705726	61619533	8436	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	61623530	61624547	2	1.5532
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	61628281	63350429	939	-0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	63352531	63354257	8	-2.3496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	63362225	64380064	557	0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	64380112	64399026	29	0.3823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	64399621	69057550	2876	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	69057755	69168574	63	-0.3196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	69171930	152400917	49583	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	152405812	152412686	7	-0.9972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	152413176	162093450	6204	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	162099468	162104358	21	-0.5004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	162104369	172605921	6669	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	172611459	172614285	10	1.872
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	172614299	176936356	2489	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	176937360	176937459	2	-1.4263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	176937563	189458252	8859	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189458354	189458418	3	1.136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189458433	189673909	210	0.0568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189674080	189674404	8	-0.9191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189676866	191261904	959	0.035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	68532	949815	384	-0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	958701	967098	6	-0.7867
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	967233	12868780	9827	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	12868865	12891533	13	-1.3727
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	12902201	14716047	1331	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14718413	14718615	2	-1.7801
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14720143	76753826	35759	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76753943	76754201	2	-2.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76754382	140176762	38685	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	140177120	140223940	20	-0.4559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	140232347	151491841	7531	5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	151492190	151498493	21	0.3566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	151498544	180722926	19511	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	94661	199283	101	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	202353	320277	95	-0.4318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	320759	4198412	3170	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	4200744	4416634	211	-0.979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	4423069	16195628	9010	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	16196247	16197030	5	-1.4425
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	16197064	31394284	9837	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	31394510	31404430	9	-1.1435
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	31417903	32539270	502	0.0254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32539530	32689867	49	-0.3286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32690181	32796593	60	0.0702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32796610	32796831	2	-2.2245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32797302	162698991	81022	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	162702851	162972042	230	-0.9875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	162973600	170892930	5628	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	52911	48551488	34306	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	48552398	48570725	9	-0.8064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	48571391	54353999	4256	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	54354003	54354011	5	2.3685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	54360982	109221021	28800	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109221034	109228448	25	-0.6029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109228480	109241146	11	-2.0009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109241218	125832210	10033	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	125832718	125833779	10	0.7749
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	125833836	133435735	4709	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	133435751	133446174	25	0.6372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	133446205	139615424	3988	-0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	139615520	139626124	8	-0.9241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	139626996	158819765	12316	0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	21254	25030360	21844	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	25030393	25040140	24	0.4723
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	25040167	51193325	13685	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	51194564	51194940	8	-1.8362
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	51201131	65010896	9056	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	65011145	65011562	6	0.7322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	65011625	95626488	18099	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	95626778	95627168	6	0.8005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	95627291	112363822	10281	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	112363846	112364436	6	-2.2199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	112369457	120221191	4968	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	120223965	120228627	4	-1.0326
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	120232035	141293268	15759	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	141295342	141296740	3	-1.2243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	141298387	146268959	2203	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	36587	23351805	20446	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	23353115	23363484	8	0.9424
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	23368488	44688241	11009	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	44688654	44767041	23	-0.4084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	44770235	78332125	6371	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	78340158	78350283	14	-1.1931
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	78353328	89914265	8351	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	89918461	89946250	3	-1.1861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	89950625	105606318	10510	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	105608517	105609111	2	-3.2875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	105610523	132715349	19181	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	132715367	132715588	2	-1.3646
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	132715602	140211215	3984	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	62759	20893207	17041	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	20893278	20893509	2	-2.3958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	20893540	24415269	2199	-0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	24417680	24418060	11	-2.1942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	24418914	28707231	2998	-0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28708104	28751053	21	0.6235
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28754548	35288374	4736	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	35289820	35294126	4	-1.0426
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	35300515	66975091	17719	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	66975117	66992801	33	0.3984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	66992932	77922857	6801	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	77927067	77927616	2	1.9817
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	77931273	135356694	39507	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	188510	4923972	2476	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	4924226	4933390	40	0.6605
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	4933441	5735099	779	0.0262
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	5739501	5768936	44	0.2736
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	5772762	18897446	9417	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18905648	18909704	28	-0.7974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18911384	18917326	9	-1.2719
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18917641	18918498	18	-0.4742
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18918511	49664951	21068	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	49667437	49714247	19	-0.5759
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	49714343	51040151	382	0.0324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	51040270	51051627	4	-0.9553
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	51061717	55132856	384	0.0391
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	55133074	55198894	40	-0.5085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	55200787	134449982	52445	0.0086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	20703	9521823	6206	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	9525137	9619559	24	0.3576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	9626236	11112094	1045	0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	11113635	11132799	10	-1.1878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	11143141	29051048	12505	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	29054895	29055789	3	-1.1639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	29059250	36273993	3945	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	36298834	36300285	2	-2.1568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	36320625	47011087	6502	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	47011286	47011682	5	-1.2247
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	47016303	67833388	12605	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	67833909	67834063	2	1.37
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	67834742	69158125	873	-0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	69158942	69164294	9	-2.3048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	69165652	71528383	1518	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	71531671	71531672	2	1.658
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	71539459	132288262	39813	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	17924949	22527210	2897	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	22530678	22531279	10	0.586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	22531501	36970036	10656	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	36970224	36986330	16	0.5459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	36986374	37950811	700	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	37955572	37956056	2	-2.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	37963057	50443055	8423	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	50444912	50447199	2	2.2826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	50447558	57482791	3868	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	57488282	57495031	6	-0.8995
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	57500053	71374989	8568	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	71375556	71378557	4	-2.1459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	71378606	114126499	29137	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	18072124	18405751	23	0.0599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	18452209	19492423	165	-0.3653
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	19493212	28793480	6065	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	28797605	28798105	2	-1.4589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	28801413	29440901	375	-0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29442516	29469175	10	0.566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29475584	40678108	7189	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	40680246	40746111	18	0.4128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	40746246	73076460	20472	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	73076604	73099653	8	-1.937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	73099668	76532887	2112	-0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	76535213	76536993	2	-1.2485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	76539178	105531947	18668	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	105550720	105550986	2	-1.4787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	105553173	105950876	181	0.2352
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	105952397	105989694	51	-0.5904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	105993576	106249617	151	0.0322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106249648	106250892	3	-1.0438
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106255229	106356482	69	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	18276341	19803370	313	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	19813174	20085795	106	0.2634
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	20088324	32507227	7395	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	32510094	32643110	70	-0.7626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	32645302	74678566	26458	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	74678682	74682830	20	-0.3908
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	74689234	80692083	3656	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	80692417	80905894	11	-0.9846
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	80966604	95609413	10575	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	95618796	95633191	11	-0.73
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	95634653	100286563	3431	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	777	32054387	20098	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32066353	32496123	68	-0.2826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32496402	32496410	5	-3.6717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32516775	33009105	76	-0.1659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	33149454	33539331	90	-0.4915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	33550900	68697043	15778	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	68709028	68755897	16	0.7751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	68768945	72941759	2507	-0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	72954559	73009537	8	0.8638
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	73014102	76929109	3212	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	76929941	76942266	17	0.8148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	76942502	88815036	10638	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	526	611794	337	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	613993	629851	4	1.1134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	630242	9181359	4870	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9182678	9184618	8	0.8328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9185149	41544175	18303	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	41546466	41707463	101	-0.2938
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	41707478	41784437	14	0.0251
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	41785076	42139835	43	0.6307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	42139861	53042488	7010	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	53043332	53043992	2	1.5168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	53046992	76243458	13643	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	76244388	76248774	2	2.0781
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	76248895	78643088	963	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	18	1543	76116029	50801	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	41910	59414087	26728	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	59422014	59433131	17	-0.7127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	59445152	60973882	762	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	60974181	60974841	3	-1.5134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	60974879	63789666	1850	-0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	9305	1508999	1207	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	1509580	1541893	41	-1.437
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	1545946	52078275	33751	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	52081215	52088051	30	-0.7864
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	52091124	62426597	7466	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	21	9758742	46921385	24403	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	14432528	22674422	4624	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	22680529	22726814	19	-1.7771
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	22731529	31912803	6717	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	31913233	31913237	2	-1.4955
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	31916339	41227226	6072	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	41229384	41264406	21	0.4434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	41272906	49501818	6078	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	49503532	49503597	2	-1.0688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	49503799	49581321	30	-0.0864
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	108477	12948844	7868	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	12949190	12955911	4	-2.6493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	12957088	15637161	1831	-0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15637898	15641261	3	-2.7507
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15644806	154835548	74816	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	2710438	20721953	6794	-0.9393
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	20725977	20898745	8	-1.9276
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	20924356	23516243	849	-0.9203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	23569054	23570347	2	-2.5695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	23585126	57427647	937	-0.9424
