Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	61735	9327413	4696	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	9327483	9399639	53	0.5132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	9400534	12892508	1810	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	12909977	12927107	7	-0.8482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	12927856	17011669	2210	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	17011778	17056457	32	0.3138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	17076467	25583341	5357	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	25593128	25646946	27	-1.6457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	25646986	58719909	19034	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	58723558	58733326	13	0.4884
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	58742470	72768916	9806	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	72768936	72811148	45	-0.895
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	72811904	106021204	21029	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	106021219	106022375	11	0.9616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	106024055	110232974	2670	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	110233037	110240178	16	1.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	110242953	112690326	1957	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	112695965	112696997	17	-0.4874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	112697012	152555527	8042	0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	152555706	152586594	35	1.485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	152590494	152759678	171	0.0427
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	152761923	152768700	37	0.4933
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	152773905	161508875	5277	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	161517939	161638480	47	-0.4858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	161638513	167764835	4895	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	167766183	167766919	4	-1.0716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	167768513	169216937	1112	-0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	169233974	169241766	7	-2.2062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	169242401	181152394	7757	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	181153434	181153609	2	-1.3986
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	181153875	196727850	10432	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	196731035	196801850	89	-0.3749
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	196801987	229811169	21891	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	229816856	229820196	3	-2.9248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	229820456	249224388	14054	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	12784	4203580	2986	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	4205687	4223167	37	0.3025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	4223512	7639373	2900	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	7643065	7646972	2	1.4152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	7647007	13708820	4400	0.0116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	13708995	13720048	7	-1.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	13721711	34520473	13675	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34523978	34525580	2	-1.523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34525967	34662978	86	-0.0232
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34663358	34664750	4	-0.5644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34675467	34691069	5	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34699315	34737057	46	-0.5716
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	34737163	40990662	4646	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	40990752	40991438	2	1.3475
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	40991806	52741737	8395	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	52743925	52781542	41	0.6448
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	52787949	110834377	31806	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	110834780	111037308	73	0.5913
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	111038563	208354912	58755	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	208354955	208359336	17	-0.8517
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	208359476	213181322	3042	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	213186549	213191825	25	-0.8508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	213192126	243089456	19068	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	60345	16239063	12946	0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	16240556	16241179	6	-2.6184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	16241325	98936963	50860	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	98937784	98949314	38	0.3411
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	98949421	129761124	18743	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	129762859	129798735	47	0.337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	129798781	161515597	19608	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	161515627	161515649	2	1.397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	161515944	162508178	674	0.0174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162508192	162623842	67	0.6303
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162623853	162714517	77	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162717727	162719562	2	-3.0376
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	162726159	192877902	19118	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	192877962	192882903	19	-1.1107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	192886435	194551388	1097	-0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194551774	194551992	3	-0.8318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194554814	194641316	62	0.0383
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194641346	194641845	4	-0.9231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	194642480	195276072	316	0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	195279210	195474763	51	0.2797
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	195478694	197896118	1174	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	12281	5310303	2610	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	5310421	5320934	6	-0.7938
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	5323295	9370690	2573	0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9372303	9429311	44	0.4463
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9430269	9437009	10	-0.5503
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9437010	9479345	16	0.4957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	9486087	10223416	547	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	10223628	10236142	35	0.5422
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	10238436	34765771	16972	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	34770306	34824725	47	0.4921
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	34829872	45005755	6642	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	45005852	45006335	4	-0.9315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	45010969	61936938	8434	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	61940935	61941952	2	1.5532
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	61945686	63667834	939	-0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	63669936	63671662	8	-2.3496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	63679630	64697469	557	0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	64697517	64716431	29	0.3823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	64717026	69374955	2882	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	69375160	69485979	63	-0.3196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	69489335	104745571	21425	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	104751630	104751637	5	1.0217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	104751644	152181467	28157	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	152186362	152193236	7	-0.9972
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	152193726	161874000	6203	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	161880018	161884908	21	-0.5004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	161884919	172369346	6670	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	172374884	172377710	10	1.872
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	172377724	176699362	2489	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	176700366	176700465	2	-1.4263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	176700569	189221258	8859	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189221360	189221424	3	1.136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189221439	189436915	210	0.0568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189437086	189437410	8	-0.9191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	189439872	191027923	958	0.035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	15532	896815	383	-0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	905701	914098	6	-0.7867
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	914233	12815780	9830	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	12815865	12838533	13	-1.3727
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	12849201	14663047	1331	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14665413	14665615	2	-1.7801
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14667143	76718070	35757	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76718187	76718445	2	-2.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76718626	140196578	38684	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	140196936	140243756	20	-0.4559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	140252163	151511648	7533	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	151511997	151518300	21	0.3566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	151518351	180790320	19511	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	149661	254283	101	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	257353	375277	95	-0.4318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	375759	4253413	3170	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	4255745	4471635	211	-0.979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	4478070	16087649	9009	0.0086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	16088268	16089051	5	-1.4425
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	16089085	31286305	9837	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	31286531	31296451	9	-1.1435
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	31309924	32431292	502	0.0254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32431552	32581889	49	-0.3286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32582203	32688615	62	0.0805
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32688632	32688853	2	-2.2245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	32689324	162779001	81027	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	162782861	163052052	230	-0.9875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	163053610	171051005	5628	0.0042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	43355	48580942	34303	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	48581852	48600179	9	-0.8064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	48600845	54386505	4255	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	54386509	54386517	5	2.3685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	54393488	109433785	28806	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109433798	109441212	25	-0.6029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109441244	109453910	11	-2.0009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	109453982	126044974	10034	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	126045482	126046543	10	0.7749
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	126046600	133785195	4710	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	133785211	133795634	25	0.6372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	133795665	139968955	3988	-0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	139969051	139979655	8	-0.9241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	139980527	159127004	12315	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	31254	24974443	21844	0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	24974476	24984223	24	0.4723
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	24984250	51030772	13686	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	51032011	51032387	8	-1.8362
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	51038578	64848342	9057	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	64848591	64849008	6	0.7322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	64849071	95557312	18099	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	95557602	95557992	6	0.8005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	95558115	112294646	10284	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	112294670	112295260	6	-2.2199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	112300281	120152010	4971	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	120154784	120159446	4	-1.0326
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	120162854	141224086	15758	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	141226160	141227558	3	-1.2243
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	141229205	146298155	2203	0.021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	46587	23361805	20449	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	23363115	23373484	8	0.9424
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	23378488	44748245	11014	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	44748658	44827045	23	-0.4084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	44830239	79142305	6373	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	79150338	79160463	14	-1.1931
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	79163508	90724445	8351	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	90728641	90756430	3	-1.1861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	90760805	106566497	10511	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	106568696	106569290	2	-3.2875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	106570702	133725528	19185	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	133725546	133725767	2	-1.3646
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	133725781	141091394	3984	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	72759	20853201	17040	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	20853272	20853503	2	-2.3958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	20853534	24375263	2199	-0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	24377674	24378054	11	-2.1942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	24378908	28667225	2998	-0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28668098	28711047	21	0.6235
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28714542	35248368	4736	9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	35249814	35254120	4	-1.0426
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	35260509	67305085	17719	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	67305111	67322795	33	0.3984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	67322926	78252851	6800	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	78257061	78257610	2	1.9817
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	78261267	135506704	39506	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	198510	4967396	2475	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	4967650	4976814	40	0.6605
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	4976865	5778523	779	0.0262
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	5782925	5812360	44	0.2736
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	5816186	18940870	9417	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18949072	18953128	28	-0.7974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18954808	18960750	9	-1.2719
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18961065	18961922	18	-0.4742
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	18961935	49708375	21065	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	49710861	49757671	19	-0.5759
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	49757767	51183575	382	0.0324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	51183694	51195051	4	-0.9553
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	51205141	55376280	384	0.0391
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	55376498	55442318	40	-0.5085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	55444211	134944770	52438	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	150442	9630556	6205	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	9633870	9728292	25	0.341
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	9734969	11220827	1044	0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	11222368	11241532	10	-1.1878
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	11251874	29159781	12503	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	29163628	29164522	3	-1.1639
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	29167983	37987726	3944	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	38012567	38014018	2	-2.1568
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	38034358	48724820	6501	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	48725019	48725415	5	-1.2247
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	48730036	69547121	12604	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	69547642	69547796	2	1.37
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	69548475	70871858	873	-0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	70872675	70878027	9	-2.3048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	70879385	73242116	1518	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	73245404	73245405	2	1.658
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	73253192	133778189	39811	0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	19026949	23629210	2897	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	23632678	23633279	10	0.586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	23633501	38072036	10654	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	38072224	38088330	16	0.5459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	38088374	39052811	700	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	39057572	39058056	2	-2.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	39065057	51545054	8423	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	51546911	51549198	2	2.2826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	51549557	58584790	3868	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	58590281	58597030	6	-0.8995
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	58602052	72476988	8567	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	72477555	72480556	4	-2.1459
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	72480605	115108397	29136	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	19002124	19335751	23	0.0599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	19382209	20422583	165	-0.3653
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	20423372	29723729	6064	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29727854	29728354	2	-1.4589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29731662	30371150	375	-0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	30372765	30399424	10	0.566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	30405833	41608358	7188	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	41610496	41676361	18	0.4128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	41676496	74006707	20470	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	74006851	74029900	8	-1.937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	74029915	77463134	2112	-0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	77465460	77467240	2	-1.2485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	77469425	106460902	18669	-0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106479675	106479941	2	-1.4787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106482128	106879831	181	0.2352
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106881352	106918649	51	-0.5904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	106922531	107178572	151	0.0322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	107178603	107179847	3	-1.0438
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	107184184	107285437	69	0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	20016328	22302006	313	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	22311810	22584431	106	0.2634
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	22586960	34719935	7396	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	34722802	34855818	70	-0.7626
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	34858010	76891511	26455	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	76891627	76895775	20	-0.3908
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	76902179	82895028	3656	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	82895362	83108839	11	-0.9846
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	83169549	97808409	10575	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	97817792	97832187	11	-0.73
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	97833649	102469040	3430	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	60777	32146886	20096	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32158852	32588622	68	-0.2826
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32588901	32588909	5	-3.6717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	32609274	33101604	76	-0.1659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	33241953	33631830	90	-0.4915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	33643399	70139542	15778	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	70151527	70198396	16	0.7751
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	70211444	74384258	2427	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	74397058	74452036	8	0.8638
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	74456601	78371608	3212	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	78372440	78384765	17	0.8148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	78385001	90287535	10641	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	526	665044	337	0.0222
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	667243	683101	4	1.1134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	683492	9240634	4870	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9241953	9243893	8	0.8328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9244424	44188392	18302	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	44190684	44351686	101	-0.2938
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	44351701	44428681	14	0.0251
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	44429320	44784652	43	0.6307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	44784678	55687489	7012	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	55688333	55688993	2	1.5168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	55691993	78628863	13642	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	78629793	78634179	2	2.0781
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	78634300	81049726	963	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	18	11543	78015057	50798	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	90910	54722275	26727	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	54730202	54741319	17	-0.7127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	54753340	56282070	762	-0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	56282369	56283029	3	-1.5134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	56283067	59097854	1850	-0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	61305	1560999	1207	0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	1561580	1593893	41	-1.437
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	1597946	52644868	33754	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	52647808	52654644	30	-0.7864
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	52657717	62956153	7466	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	21	10736871	48096957	24402	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	16052528	24344422	4624	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	24350529	24396814	19	-1.7771
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	24401529	33582803	6716	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	33583233	33583237	2	-1.4955
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	33586339	42897282	6072	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	42899440	42934462	21	0.4434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	42942962	51154952	6078	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	51156666	51156731	2	-1.0688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	51156933	51234455	31	-0.0915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	168477	13038923	7871	-0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	13039269	13045990	4	-2.6493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	13047167	15727240	1830	-0.0036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15727977	15731340	3	-2.7507
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15734885	155182354	74801	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	2650438	22262565	6839	-0.9398
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	22266589	22489357	8	-1.9276
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	22514968	25106855	849	-0.9203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	25159666	25160959	2	-2.5695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	Y	25175738	59018259	937	-0.9424
