Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	1	3218610	247813706	129044	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	2	484222	242476062	131212	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	3	2212571	197538677	106315	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	4	1053934	188763651	102657	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	914233	14663047	9476	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14665413	14665615	2	-1.7801
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	14667143	76718070	31348	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76718187	76718445	2	-2.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	5	76718626	180360469	59601	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	1014281	21795752	14538	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	21796241	21802562	2	-1.3268
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	21803063	133110723	59287	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	133111057	133111706	2	-1.734
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	6	133114505	170903919	22590	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	7	705284	158385118	81279	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	8	617667	145232496	81496	0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	789932	90724445	37080	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	90728641	90756430	3	-1.1861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	90760805	133725528	27454	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	133725546	133725767	2	-1.3646
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	9	133725781	140938752	3453	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	415240	19921036	13883	-0.0011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	19921103	19921120	2	-1.2436
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	19921183	28667225	5614	-0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28668098	28711047	21	0.6235
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	10	28714542	135225087	61294	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	11	456120	134142530	77214	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	12	889902	133161346	73898	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	13	19450806	114987458	56593	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	20501368	29723729	4459	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29727854	29728354	2	-1.4589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	29731662	30371150	375	-0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	30372765	30399424	10	0.566
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	14	30405833	105988038	44556	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	15	23687685	101884307	44494	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	16	653459	89379936	40784	-0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	987221	7445393	3104	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	7450911	7451037	2	1.2405
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	7453691	9240634	958	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9241953	9243893	8	0.8328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	17	9244424	80917016	32900	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	18	329586	77109240	42627	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	284018	31284806	11258	-0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	31288118	31288540	2	1.3049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	19	31290599	58878226	12686	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	20	455764	62219837	37271	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	21	15347621	47678774	20569	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	17423930	33582803	6981	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	33583233	33583237	2	-1.4955
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	22	33586339	49331012	9937	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	3157107	13038923	3438	-0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	13039269	13045990	4	-2.6493
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	13047167	15727240	1421	-0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15727977	15731340	3	-2.7507
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	15734885	19313070	1550	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	19314086	19316004	2	-2.3986
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C05_802016	X	19316876	154905589	57290	0.0045
