Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	3208470	22043157	10372	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	22043505	22170013	74	-0.2238
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	22308310	245880329	118534	-0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	2	474222	242124735	131211	-0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	526235	72679288	41792	-0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	72679881	72680617	2	-1.3372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	72687664	199023074	64523	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	1043934	66811948	36523	-0.0457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	66813739	66814148	2	-2.307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	66820453	189836143	66119	-0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	5	967233	180293075	100425	-0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	959281	162260940	92534	-0.0126
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	162261052	162329842	51	-0.2708
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	162330122	170745844	3822	-0.0242
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	671810	45779713	25929	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	45780320	45781111	2	-1.4811
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	45782260	127151836	39053	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	127156383	127442563	148	-0.2061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	127445166	158077879	16136	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	8	607667	145304484	81487	0.1902
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	779932	111094346	50584	-0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	111094878	111098087	2	-1.2592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	111098225	140058573	17390	-0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	10	405240	135075077	80817	-0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	11	446120	133647740	77222	-0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	12	760163	131671419	73890	-0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	13	18348806	114005560	56598	0.093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	19571208	29440901	4834	-0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	29442516	29469175	10	0.4876
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	29475584	105059083	44553	-0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	15	21238778	99701830	44497	-0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	16	593460	87907437	40843	-0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	933971	9181359	4064	-0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	9182678	9184618	8	0.6084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	9185149	59760426	23379	-0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	59760739	59760831	2	-1.1984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	59760871	78510305	9513	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	319586	8026718	4051	-0.0701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	8030131	8031766	2	-1.2485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	8032083	75210228	38569	-0.0393
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	19	235018	63570038	23947	-0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	20	403764	61690281	37268	-0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	21	14269492	46503202	20569	-0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	15803930	44999080	14817	-0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	45001133	45226642	162	-0.2213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	45226685	45544853	184	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	45546530	45547879	2	-1.061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	45547934	47717016	1755	-0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	3167107	9034252	1107	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	9037237	9038431	2	1.8315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	9038487	10696515	854	-0.0061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	10697515	10698430	2	-2.6602
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	10699891	31903594	11112	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	31910331	31935617	31	-0.5461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	31940046	154558783	50565	0.0036
