Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	3218610	22170570	10370	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	22170918	22297426	74	-0.2238
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	1	22435723	247813706	118590	-0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	2	484222	242476062	131203	-0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	2212571	72596598	41791	-0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	72597191	72597927	2	-1.3372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	3	72604974	197538677	64518	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	1053934	67129353	36520	-0.0458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	67131144	67131553	2	-2.307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	4	67137858	188763651	66127	-0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	5	914233	180360469	100425	-0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	1014281	162340950	92543	-0.0126
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	162341062	162409852	51	-0.2708
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	6	162410132	170903919	3822	-0.0242
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	705284	45813188	25929	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	45813795	45814586	2	-1.4811
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	45815735	127364600	39056	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	127369147	127655327	148	-0.2061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	7	127657930	158385118	16134	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	8	617667	145232496	81494	0.1902
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	789932	112054525	50595	-0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	112055057	112058266	2	-1.2592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	9	112058404	140938752	17391	-0.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	10	415240	135225087	80815	-0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	11	456120	41160136	25723	-0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	11	41164366	41168083	5	-1.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	11	41168860	134142530	51484	-0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	12	889902	133161346	73885	-0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	13	19450806	114987458	56594	0.093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	20501368	30371150	4834	-0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	30372765	30399424	10	0.4876
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	14	30405833	105988038	44551	-0.0151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	15	23687685	101884307	44495	-0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	16	653459	89379936	40779	-0.018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	987221	9240634	4064	-0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	9241953	9243893	8	0.6084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	9244424	62406694	23379	-0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	62407007	62407099	2	-1.1984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	17	62407139	80917016	9513	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	329586	8036718	4053	-0.07
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	8040131	8041766	2	-1.2485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	18	8042083	77109240	38564	-0.0393
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	19	284018	58878226	23947	-0.0092
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	20	455764	62219837	37271	-0.0132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	21	15347621	47678774	20568	-0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	17423930	46620416	14816	-0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	46622469	46847978	162	-0.2213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	46848021	47166189	184	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	47167866	47169215	2	-1.061
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	22	47169270	49331012	1755	-0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	3157107	9074252	1107	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	9077237	9078431	2	1.8315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	9078487	10736515	855	-0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	10737515	10738430	2	-2.6602
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	10789970	31993673	11112	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	32000410	32025696	31	-0.5461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D09_802008	X	32030125	154905589	50581	0.0036
