Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	51598	12760427	6522	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	12761331	13317089	66	-0.5035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	13317269	16961936	2220	-0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	16965844	16987299	14	-0.8497
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	17049632	25468534	5341	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	25468992	25534799	28	0.5528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	25535897	34875257	4970	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	34875303	34886855	19	-0.6062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	34888129	72532097	23775	0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	72532112	72584492	53	-0.7981
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	72585028	110029038	23713	0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	110034497	110041701	17	0.8536
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	110044476	111178891	842	-0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	111179088	111189749	38	-0.7671
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	111193590	116631820	3776	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	116633415	116642085	12	-0.6858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	116643649	150822330	5352	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	150822391	150852862	30	-1.6032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	150852902	193909539	29017	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	193911252	193913671	2	-2.5712
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	193915865	194981496	722	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	194994473	195015840	27	-2.102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	195016444	195079130	67	-1.1228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	195079153	195082414	2	-3.1748
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	195083353	246791857	35752	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	246802698	246861912	32	-0.6666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	246862475	246875992	7	-0.2298
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	246885106	246933526	34	0.3778
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	246933867	247191011	106	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	2784	4194295	2992	0.0277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	4194327	4201042	32	-0.622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	4201387	12705419	6708	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	12705465	12712429	9	-1.2599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	12713051	52607972	27446	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	52607984	52635026	38	0.7029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	52635046	87366798	22125	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	87367890	87376453	5	-1.3678
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	87379991	88914239	566	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	88914746	89270065	159	-0.4814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	89270510	110542321	9043	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	110553259	110603665	3	-1.8036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	110844411	115103317	2252	-0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	115112891	115117469	18	-0.8445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	115119684	146580874	19465	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	146580899	146595458	34	0.6552
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	146596724	242738129	59117	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	35345	26576768	20055	0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	26586501	26586902	8	-1.5676
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	26586965	58773907	19675	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	58774056	58774924	2	-2.0762
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	58785443	89502054	20829	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	89502070	89503178	6	-1.1407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	89508504	99382109	2637	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	99391360	99397507	4	-1.2732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	99398638	100420474	595	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	100427148	100431362	21	-0.41
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	100431421	100431602	3	-1.4282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	100431721	100432111	14	-0.4779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	100433654	144768455	27167	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	144768490	144768664	4	1.5702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	144769491	163990962	11898	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	163995351	164108689	70	-1.3678
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	164109266	187888639	14451	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	187888817	187888832	2	-3.2785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	187895555	194360739	4740	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	194360889	194365597	17	-1.1501
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	194369129	196766953	1485	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	196767187	196932500	28	-0.4754
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	196932593	199380515	1194	-0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	2281	65023	69	-0.2621
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	65174	4035442	1596	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	4035706	4125928	29	-0.4537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	4126388	9819488	4107	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	9832514	9844366	35	1.2915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	9845240	9999813	171	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10001452	10009766	16	-0.6831
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10011816	34463385	16793	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	34463544	34500578	34	-0.5104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	34501120	61619533	15082	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	61623530	61624547	2	2.5158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	61628281	69009658	4401	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	69016736	69168435	71	0.3798
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	69168574	70162233	334	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	70162241	70303458	74	-0.592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	70306140	191261904	74609	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	68532	738504	307	0.0168
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	738748	826190	28	0.8547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	826547	11214625	8789	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	11215636	11215771	3	-1.9621
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	11220277	12844720	1088	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	12853889	12873076	10	1.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	12877411	45226610	20214	0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	45227949	45245963	10	-0.8169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	45248448	57991117	5908	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	57991221	57994889	25	-0.7367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	57995449	180722926	76703	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	94661	236082	119	-0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	239286	326149	83	-0.4334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	327559	4112518	3105	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	4115527	4119294	7	-1.624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	4122526	32562253	19637	0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	32562501	32732569	60	-0.5896
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	32733073	54039110	13747	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	54039189	54039762	5	3.1589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	54039814	79019608	13300	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	79025784	79091904	113	-0.6685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	79095953	103841338	15470	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	103841496	103872163	51	0.6117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	103872363	170892930	44230	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	52911	1227890	372	-0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	1269559	1319071	16	-1.2898
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	1322058	3162859	861	-0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	3163095	3171047	12	-1.1645
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	3173447	14481473	8485	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	14481940	14493295	3	-2.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	14500218	22401305	6346	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	22401997	22403012	2	-2.6229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	22405279	26098815	2765	-0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	26108917	26111938	4	-2.6636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	26113744	125832792	58560	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	125832887	125834112	11	1.3577
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	125834113	142156294	10434	0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	142156339	142165614	26	0.5153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	142165684	143527185	841	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	143535212	143601243	20	-0.5323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	143607989	151304066	4764	-0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	151308434	151309279	5	-1.2832
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	151309533	155400741	2808	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	155401756	155401774	2	-2.6102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	155401958	158819765	2143	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	21254	1354475	902	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	1354769	1355009	3	-1.7904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	1355095	2235234	744	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	2242045	2246765	12	-0.7515
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	2257735	4934301	3621	0.0398
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	4940857	4941363	2	-2.1318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	4942021	6827707	2453	0.0423
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	6846225	6863552	4	-1.379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	6865598	7174042	91	-0.0869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	7174056	7869464	181	-0.5555
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	7875953	11899218	3277	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	11914604	12526350	135	-0.5228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	12526418	39349816	19468	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	39354760	39506122	59	0.9265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	39507456	95626463	31755	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	95626488	95627168	7	1.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	95627291	112360670	10275	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	112363455	112369457	11	0.9181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	112370428	120221191	4967	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	120223965	120228627	4	-3.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	120232035	124198179	2660	0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	124198376	124198387	2	-1.9811
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	124199253	144764993	14779	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	144769812	144790132	14	-0.6005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	144796206	146268959	505	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	36587	5292749	5430	0.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	5301567	5327707	13	0.6711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	5330984	18357074	11176	0.0284
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	18361916	18362565	2	-2.1286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	18364849	67673801	15021	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	67675871	67678367	8	1.1898
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	67699736	68782816	122	-0.1076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	68795766	68934188	23	-0.6694
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	68975091	140211215	48097	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	62759	122658402	81625	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	122666812	122667595	7	1.3131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	122671962	133321506	8448	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	133322525	133324068	7	-1.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	133330557	135102106	830	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	135102337	135227268	107	0.5455
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	135237230	135356694	37	-0.0323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	188510	4925086	2479	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	4926819	4930470	23	0.7334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	4930605	25565845	15568	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	25565888	25581317	20	-0.8152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	25590159	55133258	16582	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	55134454	55232215	59	0.3457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	55232377	123408880	43993	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	123415073	123426087	10	-1.1055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	123426689	134449982	8398	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	20703	8453701	5626	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	8453902	8458891	3	1.9419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	8458906	33278024	17307	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	33280096	33286409	4	-2.4647
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	33286685	98319868	39327	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	98319904	98327224	28	-0.5941
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	98327249	129837371	21488	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	129838181	129838203	2	-2.1546
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	129842984	130339919	354	-0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	130341251	130382758	22	-0.6473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	130388049	132288262	892	0.0335
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	17924949	51992800	23488	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	51995985	52003786	3	-1.6029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	52015880	56649097	2626	-0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	56656271	56676381	34	-0.6774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	56687715	114126499	38125	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	18072124	105400274	55067	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	105413362	105609107	65	-0.4973
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	105612798	105640508	14	0.5804
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	105645163	105854089	101	-0.2432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	105867070	105891789	10	-1.3461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	105892781	106356482	305	-0.0584
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	18276341	18676251	66	-0.1148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	18682392	20232440	357	-0.4842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	20232614	92280749	45662	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	92282199	92286848	3	-1.7246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	92287051	100217560	5939	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	100222659	100286563	13	-0.7563
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	777	14897340	11132	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	14956269	15023758	63	-0.5323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15032942	15566215	131	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15569290	15569323	3	-1.6039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15583138	16237991	451	0.0576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	16247941	16269863	2	-2.0461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	16270726	76929109	30069	3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	76929941	76942502	18	0.8823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	76942938	88815036	10636	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	526	36675211	20966	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	36675234	36683976	24	1.8729
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	36684057	51514043	8497	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	51515913	51518635	8	-0.8271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	51519095	51519934	4	-2.3056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	51520028	51527822	16	-0.931
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	51528246	78643088	15779	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	1543	61913280	40411	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	61918120	61918902	3	-2.3291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	61926575	63104251	768	0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	63104629	63118245	22	-0.7726
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	63118698	71686927	6551	0.0419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	71694875	71695332	4	-1.3188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	71698195	76116029	3033	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	19	41910	63789666	29357	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	9305	1508288	1200	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	1508543	1538534	46	0.3418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	1541849	62426597	41244	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	9758742	43792481	22626	0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	43795301	43797240	2	-2.6814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	43798095	46921385	1767	0.0269
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	14432528	37680168	15511	-0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	37681412	37719574	26	-0.6372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	37719651	41248296	1903	-0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	41248655	41280435	14	0.567
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	41285375	48268223	5468	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	48271702	48274935	2	-2.0484
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	48274963	49581321	637	0.0085
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	108477	4955801	1709	0.0192
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	4960153	4960457	2	-2.6277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	4960748	5017776	48	-0.1002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	5021740	5048828	32	-3.6508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	5049436	30112007	16730	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	30112186	30115154	3	-3.0367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	30115404	53837958	12930	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	53838505	53839899	2	-5.0908
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	53840161	81266294	10932	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	81282918	81298800	38	-1.7491
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	81298919	134597089	29499	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	134597124	134597262	2	-5.1439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	134600432	136013350	793	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	136016418	136016935	3	-5.1473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	136017695	146651355	7105	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	146651390	146656698	31	-1.8296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	146656851	152166439	3502	0.0148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	152166977	152181344	6	-1.8287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	152182459	154835548	1047	0.0181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	2710438	20721953	6793	-0.9292
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	20725977	20772121	6	-2.3421
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	20875471	57427647	1789	-0.9693
