Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	61735	12837840	6522	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	12838744	13444502	66	-0.5035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	13444682	17089349	2220	-0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	17093257	17114712	14	-0.8497
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	17177045	25595947	5339	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	25596405	25662212	28	0.5528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	25663310	35102670	4970	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	35102716	35114268	19	-0.6062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	35115542	72759509	23853	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	72759524	72811904	53	-0.7981
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	72812440	110227515	23705	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	110232974	110240178	17	0.8536
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	110242953	111377368	842	-0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	111377565	111388226	38	-0.7671
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	111392067	116830297	3775	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	116831892	116840562	12	-0.6858
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	116842126	152555706	5350	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	152555767	152586238	30	-1.6032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	152586278	195642916	29016	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	195644629	195647048	2	-2.5712
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	195649242	196714873	722	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	196727850	196749217	27	-2.102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	196749821	196812507	67	-1.1228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	196812530	196815791	2	-3.1748
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	196816730	248725234	35749	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	248736075	248795289	32	-0.6666
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	248795852	248809369	8	-0.1684
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	248818483	248866903	34	0.3778
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	1	248867244	249224388	106	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	12784	4216420	2992	0.0277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	4216452	4223167	32	-0.622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	4223512	12787968	6706	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	12788014	12794978	9	-1.2599
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	12795600	52754468	27445	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	52754480	52781522	38	0.7029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	52781542	87513287	22120	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	87514379	87522942	5	-1.3678
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	87526480	89133124	563	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	89133631	89488950	159	-0.4814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	89489395	111107783	9045	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	111118721	111169128	3	-1.8036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	111388632	115386847	2250	-0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	115396421	115400999	18	-0.8445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	115403214	146864404	19461	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	146864429	146878988	34	0.6552
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	2	146880254	243089456	59120	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	60345	26601764	20055	0.017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	26611497	26611898	8	-1.5676
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	26611961	58798867	19676	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	58799016	58799884	2	-2.0762
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	58810403	89419364	20823	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	89419380	89420488	6	-1.1407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	89425814	97899419	2636	0.0107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	97908670	97914817	4	-1.2732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	97915948	98937784	595	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	98944458	98948672	21	-0.41
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	98948731	98948912	3	-1.4282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	98949031	98949421	14	-0.4779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	98950964	143285765	27167	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	143285800	143285974	4	1.5702
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	143286801	162508268	11897	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	162512657	162625995	70	-1.3678
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	162626572	186405945	14452	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	186406123	186406138	2	-3.2785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	186412861	192878045	4740	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	192878195	192882903	17	-1.1501
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	192886435	195285664	1485	0.0199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	195285898	195446829	28	-0.4754
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	3	195446922	197896118	1194	-0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	12281	75023	69	-0.2621
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	75174	3984544	1596	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	3984808	4075027	29	-0.4537
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	4075487	10210390	4107	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10223416	10235268	35	1.2915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10236142	10390715	171	0.0131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10392354	10400668	16	-0.6831
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	10402718	34786990	16793	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	34787149	34824183	34	-0.5104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	34824725	61936938	15079	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	61940935	61941952	2	2.5158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	61945686	69333814	4406	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	69334141	69485840	72	0.3813
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	69485979	70127644	330	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	70127652	70268869	74	-0.592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	4	70271551	191027923	74616	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	15532	685504	306	0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	685748	773190	28	0.8547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	773547	11161625	8792	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	11162636	11162771	3	-1.9621
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	11167277	12791720	1088	0.0178
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	12800889	12820076	10	1.0099
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	12824411	45190853	20211	0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	45192192	45210206	10	-0.8169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	45212691	57955360	5907	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	57955464	57959132	25	-0.7367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	5	57959692	180790320	76706	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	149661	291082	119	-0.0263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	294286	381149	83	-0.4334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	382559	4167519	3105	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	4170528	4174295	7	-1.624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	4177527	32454275	19636	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	32454523	32609427	58	-0.5946
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	32619613	53931151	13750	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	53931230	53931803	5	3.1589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	53931855	78962889	13300	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	78969065	79035185	113	-0.6685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	79039234	103734645	15469	0.0079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	103734803	103765470	51	0.6117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	6	103765670	171051005	44237	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	43355	1261364	370	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	1303033	1352545	16	-1.2898
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	1355532	3196333	861	-0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	3196569	3204521	12	-1.1645
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	3206921	14514948	8487	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	14515415	14526770	3	-2.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	14533693	22434780	6346	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	22435472	22436487	2	-2.6229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	22438754	26132290	2764	-0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	26142392	26145413	4	-2.6636
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	26147219	126045556	58564	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	126045651	126046876	11	1.3577
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	126046877	142476719	10435	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	142476764	142486045	26	0.5153
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	142486115	143896252	839	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	143904279	143970310	20	-0.5323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	143977056	151673133	4762	-0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	151677501	151678346	5	-1.2832
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	151678600	155707980	2811	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	155708995	155709013	2	-2.6102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	7	155709197	159127004	2143	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	31254	1367068	902	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	1367362	1367602	3	-1.7904
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	1367688	2247827	745	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	2254638	2259358	12	-0.7515
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	2270328	4946893	3621	0.0398
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	4953449	4953955	2	-2.1318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	4954613	6840297	2453	0.0423
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	6858815	6876142	4	-1.379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	6878188	7186632	91	-0.0869
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	7186646	7832054	181	-0.5555
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	7838543	11861809	3275	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	11877195	12481979	136	-0.5247
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	12482047	39230659	19469	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	39235603	39386965	59	0.9265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	39388299	95557287	31756	0.0111
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	95557312	95557992	7	1.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	95558115	112291494	10278	0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	112294279	112300281	11	0.9181
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	112301252	120152010	4970	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	120154784	120159446	4	-3.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	120162854	124128998	2659	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	124129195	124129206	2	-1.9811
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	124130072	144693850	14779	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	144698669	144718989	14	-0.6005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	8	144725063	146298155	505	0.0121
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	46587	5302749	5432	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	5311567	5337707	13	0.6711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	5340984	18367074	11178	0.0283
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	18371916	18372565	2	-2.1286
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	18374849	68183981	15026	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	68186051	68188547	8	1.1898
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	68209916	69492996	122	-0.1076
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	69505946	69644368	23	-0.6694
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	9	69685271	141091394	48103	0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	72759	122668412	81622	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	122676822	122677605	7	1.3131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	122681972	133471516	8448	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	133472535	133474078	7	-1.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	133480567	135252116	830	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	135252347	135377278	107	0.5455
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	10	135387240	135506704	37	-0.0323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	198510	4968510	2478	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	4970243	4973894	23	0.7334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	4974029	25609269	15567	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	25609312	25624741	20	-0.8152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	25633583	55376682	16580	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	55377878	55475639	59	0.3457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	55475801	123903670	43987	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	123909863	123920877	10	-1.1055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	11	123921479	134944770	8397	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	150442	8562434	5626	-1e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	8562635	8567624	3	1.9419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	8567639	33386757	17303	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	33388829	33395142	4	-2.4647
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	33395418	99795737	39325	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	99795773	99803093	28	-0.5941
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	99803118	131271418	21486	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	131272228	131272250	2	-2.1546
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	131277031	131773966	354	-0.0214
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	131775298	131816805	22	-0.6473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	12	131822096	133778189	892	0.0335
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	19026949	53094799	23486	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	53097984	53105785	3	-1.6029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	53117879	57751096	2626	-0.0202
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	57758270	57778380	34	-0.6774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	13	57789714	115108397	38123	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	19002124	106329229	55064	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	106342317	106538062	65	-0.4973
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	106541753	106569463	14	0.5804
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	106574118	106783044	101	-0.2432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	106796025	106820744	10	-1.3461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	14	106821736	107285437	305	-0.0584
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	20016328	20416237	66	-0.1148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	20422378	22681076	357	-0.4842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	22681250	94479745	45660	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	94481195	94485844	3	-1.7246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	94486047	102400037	5938	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	15	102405136	102469040	13	-0.7563
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	60777	14989839	11131	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15048768	15116257	63	-0.5323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15125441	15658714	131	0.0185
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15661789	15661822	3	-1.6039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	15675637	16330490	451	0.0576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	16340440	16362362	2	-2.0461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	16363225	78371608	29988	0
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	78372440	78385001	18	0.8823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	16	78385437	90287535	10639	0.0164
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	526	39421685	20965	0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	39421708	39430450	24	1.8729
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	39430531	54159044	8499	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	54160914	54163636	8	-0.8271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	54164096	54164935	4	-2.3056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	54165029	54172823	16	-0.931
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	17	54173247	81049726	15778	0.0058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	11543	63762300	40408	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	63767140	63767922	3	-2.3291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	63775595	64953271	768	0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	64953649	64967265	22	-0.7726
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	64967718	73557939	6551	0.0419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	73565887	73566344	4	-1.3188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	18	73569207	78015057	3033	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	19	90910	59097854	29356	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	61305	1560288	1200	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	1560543	1590534	46	0.3418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	20	1593849	62956153	41247	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	10736871	44968053	22626	0.0069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	44970873	44972812	2	-2.6814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	21	44973667	48096957	1766	0.027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	16052528	39350222	15510	-0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	39351466	39389628	26	-0.6372
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	39389705	42918352	1903	-0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	42918711	42950491	14	0.567
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	42955431	49882219	5468	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	49885698	49888931	2	-2.0484
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	22	49888959	51234455	638	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	168477	4945801	1709	0.0192
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	4950153	4950457	2	-2.6277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	4950748	5007776	48	-0.1002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	5011740	5038828	32	-3.6508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	5039436	30202086	16732	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	30202265	30205233	3	-3.0367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	30205483	53821233	12931	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	53821780	53823174	2	-5.0908
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	53823436	81379638	10940	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	81396262	81412144	38	-1.7491
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	81412263	134769423	29478	0.0086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	134769458	134769596	2	-5.1439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	134772766	136185684	793	0.0117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	136188752	136189269	3	-5.1473
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	136190029	146843663	7102	0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	146843698	146849006	31	-1.8296
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	146849159	152513245	3499	0.0143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	152513783	152528150	6	-1.8287
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	X	152529265	155182354	1049	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	2650438	22262565	6838	-0.9292
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	22266589	22312733	6	-2.3421
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_D10_802002	Y	22466083	59018259	1789	-0.9693
