Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	61735	12350434	6245	0.0269
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	12354307	12355503	3	-1.362
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	12357088	12837840	261	-0.0387
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	12838744	13376489	57	0.5946
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	13377047	17005978	2184	0.0119
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	17011450	17017630	20	0.4921
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	17029592	17190862	40	-0.0187
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	17195155	17262232	60	0.528
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	17262247	25583341	5262	0.0146
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	25593128	25678084	35	0.5792
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	25678362	72768418	28760	0.0073
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	72768498	72811148	47	1.5388
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	72811904	104102788	19969	6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	104103057	104159384	28	0.4783
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	104163499	104268222	27	-0.5029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	104303403	106019205	913	0.0131
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	106019236	106022375	16	0.748
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	106024055	110226743	2648	-0.0043
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	110226970	110242953	23	-0.5492
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	110244998	112690326	1953	-0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	112695965	112697198	21	0.4218
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	112697213	146112108	5619	0.0099
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	146156692	146505912	17	-0.8368
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	146506626	149024808	724	0.0507
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	149036524	149422459	160	-0.5325
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	149422617	152750722	1685	0.0276
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	152750742	152773905	49	0.379
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	152776755	153319053	434	0.0115
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	153321285	153368333	40	0.2956
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	153368401	161479438	4786	0.0075
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	161496900	161648621	57	0.3683
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	161650375	169216937	5989	-0.0019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	169233974	169241766	7	-2.3121
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	169242401	243064078	50230	0.0048
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	243064127	243223235	45	0.3064
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	1	243228147	249224388	3752	0.0171
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	12784	4205687	2985	0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	4213864	4222703	35	-0.5616
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	4223167	34691069	21007	0.004
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	34699315	34737556	48	0.3733
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	34738032	52754468	12994	-0.0028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	52754480	52781374	33	0.3981
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	52781397	89473832	22773	0.0012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	89477381	89916032	40	-0.5593
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	89922349	90042872	27	0.0808
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	90042904	90212924	84	-0.5858
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	90212986	90244232	33	-0.9766
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	90247431	91653362	27	-0.4348
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	91653946	98118212	1023	0.0019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	98140747	98162189	9	-0.6981
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	98166878	117588586	11346	0.0072
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	117589767	117589853	2	-2.0049
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	117591245	146865183	18112	-1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	146865243	146866934	16	0.9471
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	2	146877806	243089456	58930	9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	60345	129786209	82339	6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	129786286	129806236	45	0.5873
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	129806924	162508268	20214	0.0027
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	162512657	162615915	64	0.5579
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	162623842	192873807	19120	0.0068
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	192874747	192882888	20	0.6676
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	192882903	195276072	1482	0.0173
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	195279210	195446922	32	-0.3647
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	3	195455508	197896118	1187	0.0658
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	12281	115175323	69920	0.0025
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	115175344	115182175	22	-1.2815
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	115184229	161952228	28013	-0.0018
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	161952413	162003266	42	0.5397
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	162006824	172989224	6959	0.0053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	172989300	172989533	9	-1.7061
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	172995979	173422522	231	0.0076
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	173424947	173428643	7	1.0836
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	4	173441132	191027923	11830	0.0058
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	15532	685748	307	0.1115
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	698371	809047	42	0.8296
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	809806	12815780	9833	0.0087
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	12815865	12838533	13	-1.1036
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	12849201	32102731	12089	0.0021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	32107084	32158455	39	0.9493
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	32170287	57321646	13440	0.0022
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	57326027	57333533	32	2.0476
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	57338357	103851221	26736	0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	103860373	103860604	4	-1.2053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	103861049	155475105	33343	0.0028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	155476772	155482574	12	-0.7349
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	155482715	179056595	15822	0.0053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	179058681	179105328	48	0.3492
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	179108197	180374523	714	0.0157
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	180378710	180407230	12	-0.4098
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	5	180414294	180790320	177	0.1176
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	149661	820158	564	0.018
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	821138	885843	63	0.2511
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	886884	29881026	21082	0.0107
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	29881258	29898897	6	-1.4795
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	29899677	31287222	660	0.0361
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	31287501	31309924	7	-1.1479
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	31317347	32431292	502	0.0949
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	32431552	32509476	24	-0.3929
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	32516928	53931151	13764	0.0071
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	53931230	53931855	6	-1.2191
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	53935348	68121264	6348	4e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	68125706	68154539	19	-1.0276
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	68159827	72862925	3024	0.0108
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	72866524	72868563	3	-1.5858
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	72875322	78962889	3848	0.006
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	78969065	79035185	113	-0.4876
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	6	79039234	171051005	59523	0.0044
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	43355	148300	90	0.1199
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	155066	158626	10	-0.7229
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	161442	3395079	1321	0.0472
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	3395120	3395326	4	-0.8291
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	3398760	4314204	782	0.021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	4315067	4468250	140	0.5266
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	4476950	5878648	692	0.0643
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	5878896	5889023	8	0.67
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	5891989	26131657	15750	1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	26132290	26145413	5	-1.0738
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	26147219	64566957	22779	0.0087
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	64568852	64595698	7	0.9059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	64637128	142474939	46012	0.0079
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	142476719	142486345	29	0.8337
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	7	142486495	159127004	10546	0.0167
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	31254	7170818	7800	0.0141
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	7171097	7226436	26	0.5302
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	7237903	7744064	114	-0.045
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	7745979	7747699	4	1.2605
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	7752048	12234251	3337	0.0264
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	12234298	12247486	32	-0.5051
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	12260927	24972187	10447	-0.0051
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	24974443	24991127	29	0.3847
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	24991235	50507702	13297	-0.0032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	50507893	50508334	3	-1.2906
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	50508912	115632043	39490	-0.0028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	115634487	115650697	36	-0.435
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	115650787	144698933	20491	0.0056
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	144699157	144706745	5	0.8444
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	8	144706809	146298155	509	0.1052
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	46587	28044704	23906	0.0048
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	28047588	28050691	5	-1.2585
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	28055603	85376276	18200	0.0063
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	85376571	85384244	9	-0.8347
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	85391686	106566497	14434	0.003
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	106568696	106569290	2	-2.6999
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	106570702	118454942	9099	0.0091
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	118455827	118598371	103	-0.8995
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	9	118599720	141091394	13908	0.0088
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	72759	61328154	40505	0.0064
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	61328169	61329938	3	-1.1823
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	61330297	67307951	4072	0.0036
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	67308017	67314446	25	0.5716
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	67322795	124939028	38682	0.003
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	124941951	124942348	2	-2.6353
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	124945215	125132128	163	-0.0192
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	125134010	125134743	2	-1.7962
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	125138102	134579889	6960	0.006
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	134590210	134665160	25	0.3446
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	10	134665329	135506704	353	0.0294
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	198510	4256129	1791	0.0247
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	4256300	4335878	24	-0.5
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	4336067	5783052	1476	0.0041
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	5783112	5809139	37	-0.5375
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	5809338	6107790	239	-0.0063
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	6108269	6116843	4	-1.2163
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	6117014	21863341	11809	9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	21863629	21869124	4	-1.1977
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	21869349	22469480	364	-0.0288
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	22471601	22472758	4	-1.5658
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	22473142	55363340	18776	-5e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	55374032	55376280	8	-0.6126
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	55376498	55442318	40	-1.7349
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	55444211	55445294	4	0.1871
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	55445945	55453009	7	-1.3786
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	55453576	86305813	17766	0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	86305817	86306054	4	-1.2508
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	86315174	89487949	2109	-0.0032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	89492878	89550224	12	0.6055
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	89567541	91428642	1124	0.0075
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	91429588	91438004	3	-1.2511
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	91440373	107648810	11654	0.0032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	107653743	107671601	16	0.5455
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	107672045	134601791	19284	0.0064
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	134602280	134602946	2	-3.2518
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	11	134607871	134944770	281	0.0903
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	150442	869198	418	0.085
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	869263	874029	16	-0.7647
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	875354	32002296	21407	0.012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	32002413	32063002	59	0.7075
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	32067902	45904438	6514	0.0043
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	45905840	45909537	3	-2.2292
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	45913292	117312646	45383	0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	117326854	117327152	2	-1.6071
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	117327592	118108730	610	2e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	118108902	118109411	2	-1.1859
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	118112360	132120247	9798	0.0171
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	132120586	132142331	16	0.5893
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	12	132142369	133778189	570	0.0635
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	19026949	38071135	13504	0.0102
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	38072036	38075965	4	-0.9135
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	38076267	38084757	12	-2.0447
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	38088330	53071152	9862	0.013
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	53074912	53117879	10	-0.7753
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	13	53130473	115108397	40624	0.0021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	19002124	19602674	43	0.0393
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	19604114	20010913	30	-0.3497
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	20037146	20200183	9	0.3747
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	20200381	20423372	108	-0.323
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	20424926	20958294	391	0.0128
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	20958725	20988163	27	0.3325
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	20990219	22392983	933	0.0109
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	22393148	22394144	9	0.643
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	22394264	41608358	12229	0.0091
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	41610496	41670102	16	-0.4665
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	41676340	70018047	17784	8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	70018368	70022467	8	-2.4098
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	70022713	74001123	2616	0.0029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	74006707	74029900	9	-1.3382
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	74029915	101558798	18681	0.0026
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	101559243	101559526	2	-1.5089
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	101560290	106099335	1930	-5e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106103033	106167487	9	0.7542
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106194477	106535295	133	0.092
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106538062	106561441	13	0.6584
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106567100	106783044	103	-0.0108
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106796025	106815943	8	0.7125
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106818557	106849234	18	-0.0121
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106849676	106918108	65	-0.4074
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	106918649	107153166	133	-0.0355
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	107153173	107171776	13	0.5455
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	14	107174572	107285437	78	0.0322
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	15	20016328	24584204	1394	0.055
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	15	24584996	24778891	94	0.599
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	15	24782267	76891511	32759	0.0054
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	15	76891627	76892225	9	-2.0985
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	15	76895064	102469040	17650	0.0106
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	60777	19945650	13497	0.0307
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	19945808	19970818	31	0.3977
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	19970865	34466571	6977	0.0265
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	34470704	34768011	174	0.3943
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	34768247	74364023	17792	0.0053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	74364849	74466960	21	0.4337
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	16	74467111	90287535	13818	0.0253
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	526	16654301	10482	0.0237
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	16657331	16741784	16	-0.5349
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	16757147	18358946	920	0.0096
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	18358949	18464586	26	0.6175
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	18465221	44204373	12045	0.0191
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	44208144	44364170	94	0.6083
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	17	44394412	81049726	21618	0.0106
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	18	11543	78015057	50606	0.0042
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	90910	4417845	1174	0.0312
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	4423831	4658904	59	0.291
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	4662110	5506659	365	0.0442
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	5510239	5515793	6	0.756
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	5517034	11163689	2684	0.0152
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	11168662	11169052	2	-1.5664
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	11177408	12692001	782	0.0268
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	12697366	12698102	2	-1.8656
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	12700523	43454618	15545	0.0169
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	43458054	43460991	2	-1.3961
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	43465171	51332267	3739	0.0046
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	51332386	51333238	5	-0.9511
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	51339207	52142930	556	0.0141
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	52144370	52148197	8	0.5032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	52154905	56282369	2526	0.0563
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	56282535	56283067	3	-2.5226
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	19	56286293	59097854	1846	0.028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	20	61305	48174243	31697	0.0039
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	20	48177175	48238437	40	0.3525
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	20	48238612	62956153	10645	0.0105
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	10736871	25101969	7556	-0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	25105389	25241584	114	-0.8036
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	25244455	33236455	5869	0.0029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	33237983	33240048	3	-1.916
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	33251549	43006316	7620	0.0074
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	43006547	43006591	2	1.3056
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	43009551	43554456	436	0.0074
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	43554527	43559782	3	0.9489
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	43559902	44968053	957	0.0231
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	44970873	44972812	2	-1.8378
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	21	44973667	48096957	1762	0.029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	16052528	18624771	1189	0.0287
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	18626129	18629153	8	-0.9426
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	18630060	22485080	2110	0.1279
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	22485095	22485462	7	-0.6433
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	22485487	24271745	1270	0.0877
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	24283016	24332933	30	-0.4549
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	24337307	25089378	391	0.0372
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	25089492	25110876	22	0.3087
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	25112325	37742992	9653	0.0143
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	37748729	37749946	4	-1.0999
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	37750667	42289317	2400	0.0153
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	42296668	42371554	39	0.3854
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	22	42375304	51234455	6405	0.0301
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	168477	2666353	95	-0.4065
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	2703391	68386788	36255	0.0093
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	68387060	68387061	2	-2.9285
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	68394514	92746133	11955	-0.0092
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	92747130	92757427	4	-2.6345
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	92757987	110297200	9465	-0.0056
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	110297273	110300659	4	-1.5108
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	110301027	114918395	2579	-0.0089
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	114921301	114921445	2	-2.4517
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	114924811	115263809	164	0.0014
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	115263826	115264101	2	-2.1729
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	115270803	154929498	23563	8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	X	154964055	155182354	18	-0.6836
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	2650438	14194495	2890	-1.9923
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	14197867	14197977	3	-5.7167
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	14198562	19571480	2762	-2.0507
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	19574890	21028957	674	-2.2643
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	21029230	21726325	300	-2.0292
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	21726388	21730257	2	-7.5751
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	21730587	26190025	1287	-2.0474
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	26193050	26631228	98	-1.7084
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	26631371	26818014	36	-2.3501
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A09_1230918	Y	26825375	59018259	573	-1.9168
