Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	1	3208470	245880329	128977	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	2	474222	242124735	131185	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	3	526235	199023074	106309	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	1043934	6047157	2535	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	6048369	6048415	2	-1.5411
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	6051124	25441288	12941	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	25441487	25446737	3	-1.6435
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	25456356	27230203	1109	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	27233263	27233504	4	-0.8458
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	27233628	37193219	5872	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37194958	37195539	3	-1.0293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37195968	37436009	195	0.0219
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37436339	37436348	2	-1.4615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37436749	140217931	53723	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	140225435	140226130	9	-1.0713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	140226422	189836143	26273	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	967233	176550630	98731	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	176551490	176551584	4	-1.1863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	176554463	180293075	1700	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	959281	161610111	91998	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	161612276	161734297	71	0.6085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	161736663	170745844	4349	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	7	671810	158077879	81264	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	607667	100004393	54464	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	100005327	100005461	2	-1.5217
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	100009353	145304484	27003	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	9	779932	140058573	67977	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	10	405240	135075077	80802	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	11	446120	133647740	77195	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	760163	40071030	21070	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	40072903	40072914	2	-1.5062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	40074388	73465688	18946	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	73472179	73472581	3	-1.2134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	73473967	121954358	29337	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	121956946	121992692	15	1.0897
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	121995138	122044680	10	0.6911
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	122058065	130647154	4252	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	130647557	130647791	2	-1.0755
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	130647952	131671419	237	0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	18348806	106180636	51858	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	106182239	106182711	2	-1.4255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	106183236	114005560	4741	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	19571208	29709162	4975	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	29710834	29711199	2	-1.301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	29714813	40639817	6387	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	40641789	40656339	17	0.5358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	40659336	105059083	38027	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	21238778	74140748	29664	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	74142755	74142777	2	-1.7418
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	74144748	99701830	14826	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	16	593460	87907437	40840	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	17	933971	78510305	36952	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	319586	5092643	2386	-0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	5093646	5093916	4	-1.1058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	5099670	23112142	9531	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	23112333	23112576	2	-1.3534
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	23112978	75210228	30709	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	19	235018	63570038	23928	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	403764	31092008	17697	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	31093951	31099214	4	-1.1364
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	31099247	50506027	11940	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	50509175	50509680	2	1.9264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	50511700	61690281	7609	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	21	14269492	46503202	20572	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	15803930	31819298	6890	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	31821288	31824722	5	-1.2494
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	31833574	47717016	10013	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	X	3167107	154558783	63761	3e-04
