Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	1	3218610	247813706	129033	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	2	484222	242476062	131177	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	3	2212571	197538677	106303	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	1053934	5996256	2535	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	5997468	5997514	2	-1.5411
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	6000223	25832190	12941	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	25832389	25837639	3	-1.6435
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	25847258	27621105	1109	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	27624165	27624406	4	-0.8458
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	27624530	37516824	5872	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37518563	37519144	3	-1.0293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37519573	37759614	195	0.0219
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37759944	37759953	2	-1.4615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	37760354	139998481	53726	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	140005985	140006680	9	-1.0713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	4	140006972	188763651	26275	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	914233	176618024	98731	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	176618884	176618978	4	-1.1863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	5	176621857	180360469	1700	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	1014281	161690121	92007	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	161692286	161814307	71	0.6085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	6	161816673	170903919	4349	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	7	705284	158385118	81265	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	617667	99935217	54468	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	99936151	99936285	2	-1.5217
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	8	99940177	145232496	27006	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	9	789932	140938752	67989	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	10	415240	135225087	80800	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	11	456120	134142530	77185	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	889902	41784763	21066	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	41786636	41786647	2	-1.5062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	41788121	75179421	18945	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	75185912	75186314	3	-1.2134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	75187700	123388405	29338	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	123390993	123426739	15	1.0897
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	123429185	123478727	10	0.6911
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	123492112	132081201	4251	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	132081604	132081838	2	-1.0755
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	12	132081999	133161346	237	0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	19450806	107382635	51854	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	107384238	107384710	2	-1.4255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	13	107385235	114987458	4741	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	20501368	30639411	4975	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	30641083	30641448	2	-1.301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	30645062	41570067	6386	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	41572039	41586589	17	0.5358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	14	41589586	105988038	38026	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	23687685	76353693	29663	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	76355700	76355722	2	-1.7418
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	15	76357693	101884307	14825	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	16	653459	89379936	40774	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	17	987221	80917016	36952	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	329586	5102643	2388	-0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	5103646	5103916	4	-1.1058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	5109670	24858144	9529	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	24858335	24858578	2	-1.3534
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	18	24858980	77109240	30706	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	19	284018	58878226	23928	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	455764	31628347	17700	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	31630290	31635553	4	-1.1364
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	31635586	51072620	11940	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	51075768	51076273	2	1.9264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	20	51078293	62219837	7609	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	21	15347621	47678774	20571	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	17423930	33489298	6889	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	33491288	33494722	5	-1.2494
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	22	33503574	49331012	10013	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A01_896584	X	3157107	154905589	63778	3e-04
