Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	51598	17062591	8818	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	17063449	17155662	66	-0.4929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	17157507	30509960	7683	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30510942	30511121	4	-1.3441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30511886	30517797	7	-4.572
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30520163	33462678	1522	-0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	33464538	33470302	4	-1.1256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	33471950	72522941	24811	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72528701	72535958	9	-1.198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72541006	72581960	42	0.4828
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72582019	97450669	16145	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	97456916	97469025	8	-1.265
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	97469299	103904753	3905	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	103910761	103959832	25	0.4277
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	103960870	104058504	22	-0.2912
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104058619	104841243	421	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104847407	104852537	4	-0.8779
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104856440	108570825	2478	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108618702	108651174	5	-0.8213
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108654793	108702889	46	0.04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108702894	108787720	14	-0.7826
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108815431	111177743	1498	-0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	111178891	111189749	39	-0.6838
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	111193590	147509696	7597	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	147509865	147512654	7	0.9191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	147512899	150822330	1535	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	150822391	150852862	30	1.6449
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	150852902	151028547	176	0.0284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	151028563	151035324	36	0.6619
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	151040529	245633498	64648	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	245634546	245634555	2	-2.7657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	245634674	247191011	891	-0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	2784	4183562	2984	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	4191739	4201894	42	-0.6014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	4207937	7556824	2894	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	7560516	7564423	2	-1.7713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	7564458	34570972	18196	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	34570987	34590561	22	0.6441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	34591060	40844166	4647	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	40844256	40844942	2	-2.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	40845310	52595241	8388	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	52597429	52634799	33	0.3955
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	52634830	146580899	53621	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	146580913	146583404	22	0.7806
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	146594276	150454129	2049	0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	150459972	150463438	5	-1.0498
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	150468267	180126578	18449	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	180126633	180129742	20	-0.7777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	180129757	182761903	1723	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	182763240	182767445	5	-1.1232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	182774179	194657928	6751	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	194658211	194661902	3	-3.6257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	194662320	195064634	214	0.0225
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	195067800	195074329	6	-0.8472
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	195074764	212889567	10797	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	212894794	212900070	25	-0.8055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	212900371	242738129	19059	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	35345	6626128	5842	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	6626211	6628332	22	-0.6772
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	6630078	10233579	2833	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	10233897	10247300	13	0.5488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	10250926	16214067	4225	0.0078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	16215560	16216183	6	-3.4305
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	16216329	26576768	7107	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	26586501	26589984	20	-0.465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	26589986	46603448	13062	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	46609559	46611890	4	-2.2665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	46618145	131269429	49429	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	131269443	131289614	43	0.5906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	131289688	163606060	20004	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	163620294	163625399	14	-0.8331
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	163626942	164015644	276	-0.0253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	164017424	164023184	6	1.8045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	164028410	176287082	7447	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	176287662	176290623	2	-1.6318
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	176291026	194360739	11781	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	194360889	194365597	17	-1.3798
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	194369129	199380515	2704	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	2281	9823258	5804	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	9832514	9843364	30	-2.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	9843706	10002252	178	-0.0344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10007416	10009766	14	0.5128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10011816	34462895	16798	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	34463350	34506308	39	0.604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	34506323	70154911	19870	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	70155288	70266611	60	-0.618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	70266713	72624553	1286	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	72625330	72625593	2	-1.6333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	72629212	104965020	19744	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	104971079	104971086	5	-1.2862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	104971093	107719713	1536	-0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	107719751	107720288	2	-1.8945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	107722658	156021998	28898	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156022455	156022528	3	-3.2212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156022649	156275379	162	-0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156275760	156277080	4	-0.9704
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156280233	172605921	10450	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	172611459	172614351	12	-0.9253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	172616946	189458252	11350	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	189458354	189458418	3	2.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	189458433	191261904	1178	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	68532	738748	308	0.0496
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	751371	862047	42	0.7867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	862806	103879120	62413	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	103888272	103888503	4	-1.3731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	103888948	151494364	30771	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	151495579	151498544	14	-0.7732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	151500464	177131055	17489	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	177160157	177165211	3	2.6203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	177187571	180722926	2001	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	94661	29958345	21744	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	29958359	30009555	18	-0.7948
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	30016448	31388802	652	0.0281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	31394255	31404430	11	-1.1686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	31417903	32562501	510	0.0134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32564661	32617454	17	1.2505
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32624906	32794174	83	0.1033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32796593	32798808	11	0.84
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32798923	53202820	13052	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	53203399	53203765	3	-2.0907
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	53204641	79019608	13942	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	79025784	79091904	111	-2.4939
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	79095953	169005234	58542	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169005341	169012205	10	-0.1328
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169012882	169013210	4	-1.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169017253	170892930	1179	0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	52911	158845	25	-0.0237
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	158861	207487	44	0.2836
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	207691	3689793	1670	-0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	3689888	3694284	3	-1.3009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	3694412	5917354	1337	0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	5922785	5970431	9	-0.8184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	5993133	54353999	35467	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	54354003	54354011	5	-2.1234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	54360982	56728994	1572	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	56729607	56736308	3	-2.7975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	56739660	68037709	3498	0.009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	68043996	68044986	2	-2.0787
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	68045132	70058374	1219	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	70061186	70064077	2	-2.3514
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	70066179	75275621	1914	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	75276699	75276716	2	-2.0753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	75277632	102189846	16048	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	102189852	102193806	4	-1.8693
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	102193916	109220983	4521	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	109221013	109241146	38	0.4668
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	109241218	125454233	9765	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125454450	125454514	2	-1.5051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125454836	125832887	263	0.0161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125832922	125833851	9	0.9193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125834112	141386499	9918	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	141386790	141444033	62	0.2625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	141445459	142154515	448	-0.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142156294	142159241	7	-3.4367
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142159298	142165268	15	-1.5636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142165340	142165614	5	-2.9956
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142165684	143079314	525	-0.0144
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	143079320	143153596	30	0.3799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	143154141	149425988	3921	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	149430794	149456114	10	-0.702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	149458890	158819765	6091	0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	21254	3973654	3765	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	3973702	3975628	3	-1.9713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	3975843	8423207	4590	0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	8423560	8423852	4	-2.18
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	8425717	12233614	2942	0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	12242492	12372204	70	-0.4981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	12387832	39349340	19508	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	39349482	39506122	61	0.8014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	39507456	146268959	64943	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	36587	1395945	1425	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1397240	1403700	4	-1.2273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1404235	1436459	32	-0.1096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1436987	1440320	12	-1.1456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1443039	2137099	846	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2138837	2140662	6	-0.9915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2142115	2471455	368	-0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2471651	2471683	2	1.3742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2473527	5068443	2551	-0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	5069156	5071766	9	-0.7077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	5071852	23351805	15184	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	23353115	23368488	9	0.7848
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	23369719	41942516	10881	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	41962506	41968375	2	-1.7475
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	41975187	43177963	24	0.0869
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	43177963	43716914	39	-0.5652
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	43720905	140211215	48474	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	62759	2173914	1577	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	2174223	2174599	2	-2.3112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	2174888	31286516	22701	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	31291340	31291732	9	-2.5917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	31291744	135356694	66740	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	188510	4926906	2483	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	4926919	4932848	25	0.7732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	4932910	5743981	795	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	5744656	5765715	32	0.4688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	5765914	6074552	247	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	6077223	6078670	2	-1.5317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	6079079	18897446	9168	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	18905648	18917754	40	0.6499
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	18917857	55116094	21841	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	55116129	55210152	66	-0.3895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	55217259	81181640	14606	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	81183111	81201629	11	-0.7759
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	81202309	130871348	34941	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	130871945	130874910	2	-1.8495
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	130876201	134449982	2821	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	20703	11111991	7266	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11112094	11132799	11	-1.1878
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11143141	11395358	132	-0.054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11402844	11432296	30	0.5884
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11434653	12427564	828	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	12427682	12433136	15	-0.8023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	12434147	27315735	10215	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	27315798	27318065	3	-1.1392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	27320210	31890972	3411	-0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	31893563	31959417	63	0.6024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	31959449	33185927	891	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	33192673	33199627	28	-0.675
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	33199654	51129193	9515	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	51132219	51150574	16	0.6148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	51150865	89007481	23371	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	89015800	89016205	7	-1.7659
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	89017688	132288262	29232	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	17924949	24265301	4307	0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	24266083	24276476	2	-1.5072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	24276506	31430622	5319	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	31430727	31436423	17	-1.2378
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	31438047	71374989	25478	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	71375556	71378557	4	-1.9889
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	71378606	114126499	29132	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	18072124	18627041	40	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	18632139	19493212	148	-0.5742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	19494766	23024732	2409	-0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23024967	23029835	6	-0.7913
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23029863	23521271	325	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23522541	23559231	31	-0.5699
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23559278	106356482	52603	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	18276341	18671662	63	-0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	18672040	20088838	357	-0.7284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	20224763	21605880	616	-0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	21606530	21610400	20	-0.9072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	21616786	32510868	6760	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	32514464	32605609	63	-0.766
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	32617545	45306411	7631	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	45306837	45306846	2	-1.5076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	45312953	74678566	18815	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	74678682	74682253	12	-2.4436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	74682399	74682830	8	-0.9981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	74689234	100286563	17673	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	777	19851864	13524	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	19853151	19873376	28	-0.702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	19874863	22466498	1297	-0.0176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	22466558	22612021	69	-0.4466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	22618243	88815036	37563	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	526	8183635	4547	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	8188272	8188458	2	-2.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	8190183	18299671	6884	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18299674	18405311	26	-1.4077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18405946	18891592	175	0.0214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18905947	19034153	12	0.7306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	19070824	31461241	6731	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	31464091	31501716	35	0.585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	31509204	36675234	2546	0.0175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	36676540	36676616	5	0.5203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	36676629	36683976	18	1.4373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	36684057	41700815	2627	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	41707062	41709662	6	-1.6096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	41717786	51514043	5858	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	51515913	51527590	27	-0.9014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	51527822	78643088	15765	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	18	1543	76116029	50778	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	41910	4365594	1170	0.0275
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	4367411	4368840	2	-2.6721
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	4368845	60974347	26312	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	60974841	60974879	2	-2.5994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	60978105	63789666	1848	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	9305	1515721	1210	0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	1515744	1547142	43	-0.5168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	1547584	62426597	41207	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	9758742	10030012	74	0.274
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	10030151	34213796	14902	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	34218306	34352704	112	0.527
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	34352786	43792481	7543	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	43795301	43797240	2	-2.4973
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	43798095	46921385	1767	0.0149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	14432528	14824877	64	-0.4359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	14857054	19795493	2780	0.0219
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	19795630	20175294	51	0.4126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	20175355	22651137	1710	0.0407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	22651273	22726814	30	0.5165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	22731529	49581321	18900	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	108477	73808463	38916	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	73812032	73819920	9	-0.9373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	73821416	154835548	45665	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	2710438	6009434	775	-2.6335
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	6009944	14099670	2764	-3.182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	14099736	14103917	3	-7.6439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	14104283	18080026	2077	-3.1434
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	18080874	19484001	673	-3.7363
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	19484450	22919906	1274	-3.1726
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	22924247	24840062	377	-3.6947
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	24840296	24926921	29	-2.5116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	24935600	25649572	86	-4.1743
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	25664067	26129939	98	-3.0009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26130472	26687080	195	-3.7247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26699115	26731407	13	-5.2092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26731471	26833326	43	-3.617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26847504	57427647	183	-2.7578
