Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	61735	17190004	8818	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	17190862	17283075	66	-0.4929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	17284920	30737373	7681	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30738355	30738534	4	-1.3441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30739299	30745210	7	-4.572
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	30747576	33690091	1522	-0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	33691951	33697715	4	-1.1256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	33699363	72750353	24890	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72756113	72763370	9	-1.198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72768418	72809372	42	0.4828
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	72809431	97678081	16137	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	97684328	97696437	8	-1.265
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	97696711	104103230	3904	0.0045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104109238	104158309	25	0.4277
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104159347	104256981	22	-0.2912
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	104257096	105039720	421	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	105045884	105051014	4	-0.8779
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	105054917	108769302	2478	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108817179	108849651	5	-0.8213
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108853270	108901366	46	0.04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	108901371	108986197	14	-0.7826
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	109013908	111376220	1498	-0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	111377368	111388226	39	-0.6838
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	111392067	149243072	7593	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	149243241	149246030	7	0.9191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	149246275	152555706	1536	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	152555767	152586238	30	1.6449
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	152586278	152761923	176	0.0284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	152761939	152768700	36	0.6619
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	152773905	247566875	64645	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	247567923	247567932	2	-2.7657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	1	247568051	249224388	891	-0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	12784	4205687	2984	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	4213864	4224019	42	-0.6014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	4230062	7639373	2893	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	7643065	7646972	2	-1.7713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	7647007	34717468	18195	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	34717483	34737057	22	0.6441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	34737556	40990662	4647	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	40990752	40991438	2	-2.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	40991806	52741737	8387	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	52743925	52781295	33	0.3955
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	52781326	146864429	53609	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	146864443	146866934	22	0.7806
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	146877806	150745883	2049	0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	150751726	150755192	5	-1.0498
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	150760021	180418333	18449	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	180418388	180421497	20	-0.7777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	180421512	183053658	1723	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	183054995	183059200	5	-1.1232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	183065934	194949683	6753	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	194949966	194953657	3	-3.6257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	194954075	195356389	214	0.0225
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	195359555	195366084	6	-0.8472
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	195366519	213181322	10798	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	213186549	213191825	25	-0.8055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	2	213192126	243089456	19059	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	60345	6651128	5842	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	6651211	6653332	22	-0.6772
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	6655078	10258579	2833	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	10258897	10272300	13	0.5488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	10275926	16239063	4224	0.0076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	16240556	16241179	6	-3.4305
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	16241325	26601764	7108	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	26611497	26614980	20	-0.465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	26614982	46628444	13062	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	46634555	46636886	4	-2.2665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	46643141	129786739	49423	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	129786753	129806924	43	0.5906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	129806998	162123366	20003	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	162137600	162142705	14	-0.8331
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	162144248	162532950	276	-0.0253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	162534730	162540490	6	1.8045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	162545716	174804388	7448	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	174804968	174807929	2	-1.6318
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	174808332	192878045	11781	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	192878195	192882903	17	-1.3798
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	3	192886435	197896118	2704	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	12281	10214160	5804	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10223416	10234266	30	-2.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10234608	10393154	178	-0.0344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10398318	10400668	14	0.5128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	10402718	34786500	16798	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	34786955	34829913	39	0.604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	34829928	70120322	19869	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	70120699	70232022	60	-0.618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	70232124	72405689	1286	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	72406466	72406729	2	-1.6333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	72410348	104745571	19748	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	104751630	104751637	5	-1.2862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	104751644	107500264	1536	-0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	107500302	107500839	2	-1.8945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	107503209	155802548	28902	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	155803005	155803078	3	-3.2212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	155803199	156055929	162	-0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156056310	156057630	4	-0.9704
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	156060783	172369346	10450	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	172374884	172377776	12	-0.9253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	172380371	189221258	11350	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	189221360	189221424	3	2.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	4	189221439	191027923	1177	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	15532	685748	307	0.0483
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	698371	809047	42	0.7867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	809806	103851221	62414	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	103860373	103860604	4	-1.3731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	103861049	151514171	30772	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	151515386	151518351	14	-0.7732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	151520271	177198449	17489	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	177227551	177232605	3	2.6203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	5	177254965	180790320	2001	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	149661	29850366	21743	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	29850380	29901576	18	-0.7948
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	29908469	31280823	652	0.0281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	31286276	31296451	11	-1.1686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	31309924	32454523	510	0.0134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32456683	32509476	17	1.2505
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32516928	32686196	85	0.1041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32688615	32690830	11	0.84
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	32692227	53094861	13051	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	53095440	53095806	3	-2.0907
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	53096682	78962889	13942	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	78969065	79035185	111	-2.4939
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	79039234	169263309	58548	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169263416	169270280	10	-0.1328
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169270957	169271285	4	-1.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	6	169275328	171051005	1179	0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	43355	3723267	1737	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	3723362	3727758	3	-1.3009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	3727886	5950828	1337	0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	5956259	6003905	9	-0.8184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	6026607	54386505	35465	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	54386509	54386517	5	-2.1234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	54393488	56761500	1572	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	56762113	56768814	3	-2.7975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	56772166	68399773	3499	0.009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	68406060	68407050	2	-2.0787
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	68407196	70420438	1219	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	70423250	70426141	2	-2.3514
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	70428243	75437685	1914	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	75438763	75438780	2	-2.0753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	75439696	102402610	16052	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	102402616	102406570	4	-1.8693
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	102406680	109433747	4522	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	109433777	109453910	38	0.4668
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	109453982	125666997	9766	-0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125667214	125667278	2	-1.5051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	125667600	126045651	263	0.0161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	126045686	126046615	9	0.9193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	126046876	141740030	9919	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	141740321	141797564	62	0.2625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	141798990	142474939	448	-0.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142476719	142479665	7	-3.4367
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142479722	142485699	15	-1.5636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142485771	142486045	5	-2.9956
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	142486115	143448381	523	-0.0142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	143448387	143522663	30	0.3799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	143523208	149795055	3918	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	149799861	149825181	11	-0.6777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	7	149827957	159127004	6094	0.0108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	31254	3986246	3766	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	3986294	3988220	3	-1.9713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	3988435	8385797	4590	0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	8386150	8386442	4	-2.18
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	8388307	12189243	2940	0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	12198121	12327833	71	-0.4895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	12343461	39230183	19509	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	39230325	39386965	61	0.8014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	8	39388299	146298155	64949	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	46587	1405945	1427	0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1407240	1413700	4	-1.2273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1414235	1446459	32	-0.1096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1446987	1450320	12	-1.1456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	1453039	2147099	846	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2148837	2150662	6	-0.9915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2152115	2481455	368	-0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2481651	2481683	2	1.3742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	2483527	5078443	2551	-0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	5079156	5081766	9	-0.7077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	5081852	23361805	15185	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	23363115	23378488	9	0.7848
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	23379719	41952516	10886	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	41972506	41978375	2	-1.7475
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	41985187	43187967	25	0.0716
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	43315670	43776918	38	-0.5723
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	9	43780909	141091394	48481	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	72759	2183914	1577	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	2184223	2184599	2	-2.3112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	2184888	31246510	22700	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	31251334	31251726	9	-2.5917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	10	31251738	135506704	66738	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	198510	4970330	2482	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	4970343	4976272	25	0.7732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	4976334	5787405	795	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	5788080	5809139	32	0.4688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	5809338	6117976	247	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	6120647	6122094	2	-1.5317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	6122503	18940870	9168	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	18949072	18961178	40	0.6499
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	18961281	55359518	21838	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	55359553	55453576	66	-0.3895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	55460683	81503992	14606	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	81505463	81523981	11	-0.7759
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	81524661	131366138	34934	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	131366735	131369700	2	-1.8495
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	11	131370991	134944770	2821	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	150442	11220724	7265	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11220827	11241532	11	-1.1878
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11251874	11504091	132	-0.054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11511577	11541029	30	0.5884
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	11543386	12536297	828	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	12536415	12541869	15	-0.8023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	12542880	31999705	13626	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	32002296	32068150	63	0.6024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	32068182	33294660	891	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	33301406	33308360	28	-0.675
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	33308387	52842926	9514	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	52845952	52864307	16	0.6148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	52864598	90483350	23370	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	90491669	90492074	7	-1.7659
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	12	90493557	133778189	29230	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	19026949	25367301	4307	0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	25368083	25378476	2	-1.5072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	25378506	32532622	5318	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	32532727	32538423	17	-1.2378
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	32540047	72476988	25476	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	72477555	72480556	4	-1.9889
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	13	72480605	115108397	29131	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	19002124	19557041	40	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	19562139	20423372	148	-0.5742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	20424926	23954892	2409	-0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23955127	23959995	6	-0.7913
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	23960023	24451431	325	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	24452701	24489391	31	-0.5699
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	14	24489438	107285437	52600	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	20016328	20411648	63	-0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	20412026	22587474	357	-0.7326
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	22673399	24054787	616	-0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	24055437	24059307	20	-0.9072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	24065693	34723576	6761	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	34727172	34818317	63	-0.766
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	34830253	47519119	7630	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	47519545	47519554	2	-1.5076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	47525661	76891511	18813	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	76891627	76895198	12	-2.4436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	76895344	76895775	8	-0.9981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	15	76902179	102469040	17672	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	60777	19944363	13523	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	19945650	19965875	28	-0.702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	19967362	22558997	1297	-0.0176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	22559057	22704520	69	-0.4466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	16	22710742	90287535	37484	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	526	8242910	4547	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	8247547	8247733	2	-2.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	8249458	18358946	6885	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18358949	18464586	26	-1.4077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18465221	18950867	175	0.0214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	18965222	19093560	12	0.7306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	19130231	34437128	6731	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	34439978	34477603	35	0.585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	34485091	39421708	2544	0.0174
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	39423014	39423090	5	0.5203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	39423103	39430450	18	1.4373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	39430531	44345038	2627	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	44351285	44353885	6	-1.6096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	44362009	54159044	5860	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	54160914	54172591	27	-0.9014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	17	54172823	81049726	15764	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	18	11543	78015057	50775	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	90910	4414594	1170	0.0275
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	4416411	4417840	2	-2.6721
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	4417845	56282535	26311	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	56283029	56283067	2	-2.5994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	19	56286293	59097854	1848	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	61305	1567721	1210	0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	1567744	1599142	43	-0.5168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	20	1599584	62956153	41210	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	10736871	11008141	74	0.274
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	11008280	35291926	14903	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	35296436	35430834	112	0.527
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	35430916	44968053	7542	-0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	44970873	44972812	2	-2.4973
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	21	44973667	48096957	1766	0.0148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	16052528	16444877	64	-0.4359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	16477054	21465493	2780	0.0219
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	21465630	21845294	51	0.4126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	21845355	24321137	1710	0.0407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	24321273	24396814	30	0.5165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	22	24401529	51234455	18900	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	168477	73891738	38928	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	73895307	73903195	9	-0.9373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	X	73904691	155182354	45640	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	2650438	2985595	152	-2.9896
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	2985939	5949434	656	-2.4578
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	5949944	15590276	2771	-3.1763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	15590342	15594523	3	-7.6439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	15594889	19570632	2081	-3.1407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	19571480	21024613	673	-3.7363
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	21025062	24510518	1275	-3.1709
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	24514859	26430674	377	-3.6947
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26430908	26517533	29	-2.5116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	26526212	27240184	86	-4.1743
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	27254679	27720551	98	-3.0009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	27721084	28277692	195	-3.7247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	28289727	28322019	13	-5.2092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	28322083	28423938	43	-3.617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_A09_896468	Y	28438116	59018259	183	-2.7578
