Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	61735	752566	45	-0.405
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	757469	25582843	14116	-0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	25583291	25646184	26	0.5805
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	25646689	35091594	4973	-0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	35091638	35116561	25	-0.5665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	35117925	60837503	15546	-0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	60839982	60849578	4	-1.2627
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	60852720	72768916	8322	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	72768936	72811148	45	-1.1469
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	72811904	76050174	1930	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	76050815	76059879	6	0.7681
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	76059959	81888456	3851	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	81888602	81888605	2	2.0671
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	81888667	104159384	14303	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	104163499	104239689	15	0.5945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	104239986	106819698	1482	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	106821572	106821632	2	-1.2886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	106821919	108759826	1424	-0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	108762012	108817179	5	0.7238
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	108828957	110234628	716	0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	110235032	110240178	6	-0.753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	110242953	112695965	1960	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	112696087	112697213	21	-1.5474
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	112697241	152555527	8043	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	152555706	152586238	31	2.6797
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	152586278	152586594	4	0.8949
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	152590494	152756538	167	-0.0239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	152756774	152768700	41	0.5538
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	152773905	169216937	11337	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	169233974	169255402	10	0.5261
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	169256501	174797333	3530	0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	174797385	174797448	2	1.4444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	174797505	189648157	9928	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	189648483	189648527	2	-1.906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	189652047	193155792	2337	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	193156279	193156332	3	1.2293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	193156348	196791043	2472	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	196798565	196799159	7	0.8666
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	196799288	243854196	32586	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	243860924	243861061	5	-1.094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	1	243863108	249224388	3389	0.0247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	12784	57402044	40601	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	57402162	57445471	68	0.8731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	57447398	153787485	54443	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	153796068	153796784	3	-1.9198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	153800569	159710696	3450	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	159713636	159726490	5	-0.9003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	159730093	165851888	3592	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	165853974	165864049	5	-0.967
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	165865439	208354955	25742	0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	208355178	208359336	16	-2.883
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	208359476	229759479	13895	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	229759646	229765383	14	0.4611
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	2	229766023	243089456	8228	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	60345	5389179	4730	0.0137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	5390237	5436077	36	-0.9339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	5436289	61654189	37601	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	61658915	61718585	45	-0.9236
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	61724182	65188453	2983	0.0078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	65189235	65210452	53	-0.6176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	65216349	68746164	2424	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	68746259	68747413	14	-1.1815
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	68748758	75568549	4938	0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	75572549	75613174	10	0.9376
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	75615439	84102222	4689	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	84105433	84106166	2	-2.9398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	84110967	162123366	45172	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	162137600	162142705	14	-0.7083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	162144248	162532950	276	0.0502
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	162534730	162540473	5	1.9438
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	162540490	192874747	19250	0.0113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	192877902	192882903	20	0.9992
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	192886435	195390680	1489	0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	195399075	195474763	45	-0.372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	3	195478694	197896118	1173	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	12281	9456977	5248	0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	9461230	9479345	9	-1.0247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	9486087	10210390	546	0.0266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	10214160	10235166	34	1.2284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	10235182	10392354	174	0.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	10393154	10400668	15	-1.9888
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	10402718	34779054	16813	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	34786500	34824183	37	-0.2664
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	34824725	34829872	2	-1.5469
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	34829913	48204299	8544	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	48204636	48204648	2	-1.3654
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	48205942	49267848	438	0.0274
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	49291192	49291355	2	-2.2826
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	49297220	104745571	32007	0.0077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	104751630	104751637	5	1.2383
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	104751644	115173700	6311	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	115175323	115184266	26	0.5051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	115184310	150797994	21086	0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	150803334	150804726	2	-1.4434
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	150806599	155802548	3033	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	155803005	155803078	3	-2.7308
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	155803199	185050629	19100	0.0114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	185057573	185060722	3	1.7176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	185063454	189221258	2882	0.0237
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	189221360	189221375	2	-1.3201
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	4	189221424	191027923	1177	0.0187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	15532	685748	307	0.0227
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	698371	800686	35	0.8015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	800839	12819313	9885	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	12819375	12838533	11	-1.0657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	12849201	46271108	20578	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	46271930	46273502	6	-2.4702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	46278212	123146210	45125	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	123146444	123146526	2	-2.0564
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	123146850	177198449	35192	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	177227551	177232605	3	2.4667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	5	177254965	180790320	2003	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	149661	8925346	7219	0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	8927511	8927512	2	-1.548
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	8928968	29837072	14518	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	29837187	29874808	24	0.8699
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	29876959	32587457	1229	0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	32593021	32602107	7	-1.1171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	32602269	32690027	59	0.185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	32690797	32690812	2	2.0164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	32690830	74591858	24229	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	74592225	74601410	10	0.8862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	74603555	78962581	2765	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	78962626	79035174	114	-0.4205
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	79035185	134266268	34629	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	134269071	134269632	2	-2.0652
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	6	134272072	171051005	25159	0.0112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	43355	38284199	27437	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	38286205	38340662	77	-0.2342
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	38341031	54380373	11064	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	54386505	54386517	6	-1.8853
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	54393488	70420438	6297	0.0165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	70423250	70426141	2	-2.0556
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	70428243	109433798	22513	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	109437092	109437673	10	-0.7143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	109437675	109437680	3	0.1101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	109437757	109453910	22	-1.2152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	109453982	126045556	10043	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	126045651	126046615	10	1.1423
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	126046876	133785177	4706	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	133785195	133790443	24	0.4777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	133795634	141763124	5210	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	141769643	141770532	10	-1.2729
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	141770627	141781513	4	-4.5183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	141781775	141799117	32	-1.7381
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	141799160	142412188	408	0.0353
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	142413506	142476719	40	-0.2453
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	142476764	142479722	7	-3.3571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	142479807	142486045	19	-1.7097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	142486115	143218968	470	-0.0165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	143223081	143532998	90	-0.2569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	143543851	153350712	6088	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	153351856	153382423	26	0.4678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	153395472	154965392	1230	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	154966514	154967008	11	-0.5034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	7	154967105	159127004	2664	0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	31254	3787060	3439	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	3787083	3790106	23	-0.6404
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	3791218	4165733	697	0.043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	4166023	4166038	3	-1.0964
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	4166067	5598735	1934	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	5598764	5604300	23	-0.4994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	5604327	7831645	1891	0.0305
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	7832054	7935855	22	-0.8053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	7943182	18265154	8720	0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	18266157	18271185	4	-1.6473
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	18271387	24972187	5090	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	24974443	24984223	25	0.5883
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	24984250	40771996	10171	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	40777852	40778471	2	-1.7308
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	40783680	112295038	40996	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	112295081	112295260	4	-2.3414
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	112300281	143224644	21866	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	143225883	143234817	3	1.3108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	8	143235878	146298155	1070	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	46587	23361805	20462	0.0125
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	23363115	23373484	8	0.8391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	23378488	25599860	1621	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	25599963	25600655	2	-1.5792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	25603763	27799231	1658	0.0077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	27799950	27808093	10	-0.9341
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	27809668	28309878	487	0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	28310570	28311629	2	1.7978
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	28312061	44404912	7225	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	44424451	44789463	27	-0.9374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	44795319	69492996	298	-0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	69505946	69807016	27	-0.4176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	69810430	72808962	1583	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	72810986	72812754	2	-3.632
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	9	72813681	141091394	46536	-0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	72759	4290814	3587	0.0106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	4290838	4290924	2	1.7982
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	4291016	46691480	27997	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	46917315	46932195	4	-2.5949
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	46943377	67306276	13158	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	67307923	67314446	28	-1.6407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	67322795	89046064	14487	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	89046498	89069796	3	1.3428
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	89070745	90962264	1415	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	90962279	90962421	2	1.2083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	90963088	94634221	2276	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	94636279	94636367	2	-1.3659
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	94640877	124343951	20216	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	124344109	124351013	6	-0.9399
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	10	124356812	135506704	7923	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	198510	5793583	3316	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	5794245	5809139	22	0.4233
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	5809338	12329921	4968	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	12337312	12337323	2	-2.0596
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	12338809	33331249	14831	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	33332700	33337427	3	1.2631
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	33337633	42961831	7010	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	42969584	42970825	4	0.9144
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	42971040	49758987	3754	0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	49759555	49760688	6	-1.0888
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	49766161	54965608	544	0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	54969861	54982211	5	-0.9051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	55009475	55376023	208	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	55376236	55447237	49	-0.4099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	55447332	79967513	13309	-0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	79967548	79967564	2	-2.6951
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	79967686	84486717	3267	0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	84487003	84493235	2	1.5986
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	84493877	91830489	4812	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	91830658	91831043	2	1.8708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	91832704	107238656	11080	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	107238671	107239128	6	-1.7926
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	11	107252362	134944770	19964	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	150442	865970	418	0.0507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	869109	873504	16	-0.7756
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	873944	33386757	22518	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	33388829	33395142	4	-3.4462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	33395418	34250696	540	0.0299
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	34256709	34275406	12	-1.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	34275794	43247903	3423	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	43248117	43248885	3	1.4741
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	43250357	45905840	1599	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	45908740	45909537	2	-2.7698
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	45913292	73242116	16731	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	73245404	73245405	2	1.9894
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	12	73253192	133778189	39823	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	19026949	23629210	2900	0.02
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	23632678	23633515	12	-2.1363
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	23638195	27742853	3154	0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	27743080	27746711	2	1.4279
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	27749358	32532121	3577	0.0113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	32532622	32538408	17	-2.1755
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	32538423	51545054	13051	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	51546911	51549198	2	1.853
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	51549557	57712800	3402	0.0149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	57713228	57778380	46	-0.4991
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	57789714	70733449	7886	0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	70733803	70772394	49	-0.9642
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	13	70772766	115108397	30225	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	19002124	19402242	26	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	19416191	19469520	12	0.7151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	19541714	19693249	12	-0.5933
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	19697885	85565426	41903	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	85565473	85565800	3	1.1808
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	85565964	106290911	13124	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106290981	106302997	7	0.7099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106303042	106751284	177	0.0377
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106753859	106753867	3	1.8013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106754003	106879831	56	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106881352	106934284	56	-0.4508
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	106934548	107153173	128	0.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	107160325	107179847	21	-0.3147
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	14	107184184	107285437	69	0.0595
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	20016328	20820067	155	-0.0584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	20820159	20843562	4	0.9092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	20847933	21173886	108	-0.1606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	21186400	21188006	2	-1.8946
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	21192108	34671312	7542	0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	34672086	34855818	80	-0.5772
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	34858010	47519119	7634	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	47519545	47519554	2	1.4866
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	47525661	92765755	29093	-0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	92765874	92766294	3	1.5845
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	92766758	94162242	1257	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	94163349	94163373	2	1.7158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	15	94163700	102469040	6188	0.0165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	60777	18181984	12800	0.0097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	18198717	18238289	3	1.3579
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	18242726	18606678	18	0.097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	18627301	18633416	4	0.6968
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	18635804	19944363	704	-0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	19945650	19967362	29	0.3456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	19970254	28747534	5430	-0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	28753451	28824652	4	1.012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	28824871	32146886	1105	-0.0206
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	32158852	32655523	98	0.3416
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	32743289	33369764	61	0.0542
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	33371606	33773972	99	0.3371
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	33776085	54409843	5746	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	54409941	54419632	18	-0.6407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	54420698	55796594	1211	-0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	55798222	55798779	3	2.414
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	16	55804348	90287535	25109	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	526	665044	337	0.0374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	667243	667377	2	1.4086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	678491	16740270	10185	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	16741515	16741528	2	-1.4219
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	16741784	18319862	919	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	18355392	18459272	27	-1.3723
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	18464586	39423090	9511	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	39423103	39430531	19	1.3533
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	39432724	44150787	2503	-0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	44151786	44364170	135	0.265
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	44394412	44752283	47	-0.4994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	44752300	54159044	5815	-0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	54160914	54172591	27	-0.8772
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	17	54172823	81049726	15781	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	18	11543	38260420	22846	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	18	38260434	38265389	18	-1.783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	18	38268024	40051678	1215	0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	18	40056569	40057767	25	-0.4067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	18	40058395	78015057	26719	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	19	90910	59097854	29361	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	61305	69408	20	-0.0522
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	70331	73546	3	1.3237
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	74347	1581768	1217	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	1582092	1593893	7	-1.1413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	1597946	12629226	8449	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	12629565	12629594	2	-1.4571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	12629981	14771472	1471	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	14781684	14823472	64	-0.7085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	20	14823693	62956153	31270	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	21	10736871	25126738	7607	0.0082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	21	25126781	25126789	2	1.6777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	21	25127082	48096957	16800	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	22	16052528	20327355	2148	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	22	20330744	20491884	5	-1.0668
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	22	20499111	42899440	15279	-0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	22	42904606	42934462	20	0.4954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	22	42942962	51234455	6112	-0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	X	168477	32298686	20002	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	X	32298707	32299325	2	-4.9477
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	X	32300604	47674487	9006	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	X	47674903	47682023	5	-4.6467
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	X	47683824	155182354	55503	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	Y	2650438	26393662	7970	-0.8927
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	Y	26401714	26776515	82	-0.5569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	Y	26802327	27224321	50	-0.9418
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	Y	27240184	27577219	58	-0.6166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B01_896520	Y	27580289	59018259	475	-0.9044
