Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	1	3208470	245880329	129046	-0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	474222	36856704	21845	-0.0139
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	36857038	36859917	2	-1.7111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	36860007	237577340	106868	-0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	237580406	238462548	590	0.2748
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	238463945	242124735	1943	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	526235	61101861	33502	-0.0147
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	61102245	61103057	3	-1.18
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	61105940	80143067	12393	-0.0166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	80144468	80146412	2	-1.4821
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	80153497	114796700	15711	-0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	114799073	137153330	13171	-0.4991
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	137154224	199023074	31565	-0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	4	1043934	189836143	102695	-0.0227
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	967233	45414213	25934	0.3266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	50160613	63731565	7912	-0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	63732384	63737631	2	-1.2698
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	63743113	85748748	12049	-0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	85751693	85751884	2	-1.3981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	85757166	104004374	8618	-0.0199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	104006584	104007071	4	-0.9065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	104007160	137943116	20031	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	137943339	150804981	7694	-0.5108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	150809484	174678035	15769	-0.0191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	174680101	174683211	5	-0.8821
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	174683762	180293075	2442	-0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	6	959281	57314444	33885	0.3357
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	6	62292492	170745844	62554	-0.0198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	671810	37970375	21547	-0.0181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	37970931	37972298	2	-1.247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	37973426	77840972	17648	-0.0224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	77851605	77905207	56	-0.5807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	77905688	90753467	6471	-0.0239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90753839	90796315	41	0.3051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90799127	90826711	17	-0.0324
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90827331	93395410	1590	0.3281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	93395475	94512476	624	0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	94514585	125429126	15998	0.3282
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	125433441	126234844	476	-0.0368
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	126326883	144887622	10027	0.5979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	144893386	145527126	314	-0.0457
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	145550166	158077879	6480	0.5977
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	8	607667	145304484	81505	-0.0194
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	779932	2471455	1070	-0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	2471651	2471683	2	1.15
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	2473527	29695886	16894	-0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	29696968	29698354	3	-1.4426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	29700135	85722506	16146	-0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	85735749	85754650	14	0.4769
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	85762345	99962441	9180	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	99963089	99963293	2	-1.4246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	99964405	140058573	24690	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	405240	56170070	32360	-0.0193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	56171412	56171581	2	-2.289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	56172221	75144761	10879	-0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	75146275	76196010	457	0.2576
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	76200476	122555670	29315	-0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	122556318	122648298	74	-0.5499
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	122649958	135075077	7758	-0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	446120	131320554	75995	-0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	131325896	131348613	17	-0.6087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	131349513	133647740	1227	-0.0235
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	760163	23637521	13253	0.3277
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	23637697	24183022	383	-0.0398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	24186023	36946731	5927	0.3274
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	37509833	59166928	11845	-0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	59169893	59234757	33	-0.5376
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	59235142	103610623	27184	-0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	103613659	103746534	80	0.3636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	103746912	131671419	15227	-0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	18348806	70928746	29622	-0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	70929681	73197831	1489	0.3398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	73198607	75755475	1849	-0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	75758419	76989597	773	0.325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	77017136	77407769	224	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	77412748	78941258	1013	0.5856
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	78944997	87952668	5062	-0.0269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	87953562	88009981	27	-0.3722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	88014020	114005560	16570	-0.0208
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	19571208	102903634	48751	-0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	102909751	103002499	49	-0.5415
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	103004974	105059083	627	-0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	21238778	21847665	440	-0.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	21850173	21879837	27	-0.5204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	22352815	99701830	44052	-0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	593460	6122513	2402	-0.0106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	6122616	6142207	21	0.4079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	6145210	22975270	7305	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	22979076	23052473	37	-0.5043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23053194	23147409	44	-0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23152701	23156925	2	-0.8407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23161798	23536333	205	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23537572	23587787	21	-0.4567
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23588986	87907437	30814	-0.0124
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	933971	62240297	28804	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	62240793	63318358	672	0.3292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	63321351	64802658	777	-0.0145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	64806113	64806871	2	-1.3744
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	64807654	78510305	6721	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	319586	64636529	37386	-0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	64636730	64640767	2	-1.3466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	64642563	75210228	5260	-0.0264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	19	235018	63570038	23944	-0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	403764	26145899	16803	-0.4952
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	29307634	29628788	160	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	29631342	29632913	4	-1.3473
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	29635511	61690281	20287	-0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	14269492	34218306	12659	-0.0174
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	34230168	34350422	110	0.4529
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	34352704	46503202	7808	-0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	15803930	25222898	2514	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	25224879	29100626	2692	-0.4962
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	29100913	29101554	3	-1.8091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	29104653	30585802	777	-0.4464
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	30587674	35156855	3378	-0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	35159111	35160982	2	-2.0872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	35161544	47717016	7553	-0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	3167107	73808463	28412	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	73812032	73821416	10	-1.06
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	73821778	154558783	35349	0.0024
