Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	1	3218610	247813706	129102	-0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	484222	237912601	128707	-0.0149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	237915667	238797809	590	0.2748
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	2	238799206	242476062	1943	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	2212571	61126821	33501	-0.0147
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	61127205	61128017	3	-1.18
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	61130900	80060377	12391	-0.0166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	80061778	80063722	2	-1.4821
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	80070807	113314010	15709	-0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	113316383	135670640	13171	-0.4991
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	3	135671534	197538677	31564	-0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	4	1053934	188763651	102700	-0.0227
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	914233	45378456	25934	0.3266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	50124856	63695809	7912	-0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	63696628	63701875	2	-1.2698
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	63707357	85712992	12050	-0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	85715937	85716128	2	-1.3981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	85721410	103976475	8617	-0.0199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	103978685	103979172	4	-0.9065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	103979261	137915217	20030	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	137915440	150824788	7696	-0.5107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	150829291	174745429	15768	-0.0191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	174747495	174750605	5	-0.8821
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	5	174751156	180360469	2442	-0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	6	1014281	57206485	33888	0.3356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	6	62234533	170903919	62560	-0.0198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	705284	38003850	21547	-0.0182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	38004406	38005773	2	-1.247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	38006901	78003036	17647	-0.0224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	78013669	78067271	56	-0.5807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	78067752	90915531	6470	-0.0239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90915903	90958379	41	0.3051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90961191	90988775	17	-0.0324
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	90989395	93557474	1592	0.3286
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	93557539	94674540	624	0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	94676649	125641890	16001	0.3281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	125646205	126447608	476	-0.0368
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	126539647	145256689	10025	0.5978
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	145262453	145896193	314	-0.0457
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	7	145919233	158385118	6480	0.5977
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	8	617667	145232496	81512	-0.0194
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	789932	2481455	1070	-0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	2481651	2481683	2	1.15
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	2483527	29705886	16895	-0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	29706968	29708354	3	-1.4426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	29710135	86532686	16152	-0.009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	86545929	86564830	14	0.4769
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	86572525	100922620	9181	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	100923268	100923472	2	-1.4246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	9	100924584	140938752	24694	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	415240	56500064	32360	-0.0193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	56501406	56501575	2	-2.289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	56502215	75474755	10878	-0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	75476269	76526004	457	0.2576
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	76530470	122565680	29314	-0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	122566328	122658308	74	-0.5499
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	10	122659968	135225087	7758	-0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	456120	131815344	75985	-0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	131820686	131843403	17	-0.6087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	11	131844303	134142530	1227	-0.0235
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	889902	23746254	13250	0.3276
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	23746430	24291755	383	-0.0398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	24294756	33521107	5926	0.3273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	39223566	60880661	11844	-0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	60883626	60948490	33	-0.5376
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	60948875	105086493	27185	-0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	105089529	105222404	80	0.3636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	12	105222782	133161346	15226	-0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	19450806	72030745	29619	-0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	72031680	74299830	1489	0.3398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	74300606	76857474	1849	-0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	76860418	78091596	773	0.325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	78119135	78509768	224	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	78514747	80043257	1013	0.5856
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	80046996	89154667	5061	-0.0268
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	89155561	89211980	27	-0.3722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	13	89216019	114987458	16570	-0.0208
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	20501368	103833881	48749	-0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	103839998	103932746	49	-0.5415
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	14	103935221	105988038	627	-0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	23687685	24296572	440	-0.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	24299080	24328744	27	-0.5204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	15	24801722	101884307	44050	-0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	653459	6182512	2402	-0.0106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	6182615	6202206	21	0.4079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	6205209	23067769	7305	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23071575	23144972	37	-0.5043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23145693	23239908	44	-0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23245200	23249424	2	-0.8407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23254297	23628832	205	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23630071	23680286	21	-0.4567
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	16	23681485	89379936	30748	-0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	987221	64809835	28804	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	64810331	65887896	672	0.3292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	65890889	67291063	777	-0.0145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	67294518	67295276	2	-1.3744
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	17	67296059	80917016	6721	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	329586	66485549	37383	-0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	66485750	66489787	2	-1.3466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	18	66491583	77109240	5260	-0.0264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	19	284018	58878226	23944	-0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	455764	26197899	16806	-0.4952
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	29843973	30165127	160	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	30167681	30169252	4	-1.3473
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	20	30171850	62219837	20287	-0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	15347621	35296436	12660	-0.0175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	35308298	35428552	110	0.4529
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	21	35430834	47678774	7806	-0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	17423930	26892898	2514	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	26894879	30770626	2691	-0.4964
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	30770913	30771554	3	-1.8091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	30774653	32255802	777	-0.4464
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	32257674	36826909	3378	-0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	36829165	36831036	2	-2.0872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	22	36831598	49331012	7553	-0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	3157107	73891738	28423	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	73895307	73904691	10	-1.06
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B05_896622	X	73905053	154905589	35355	0.0023
