Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	1	3218610	197571577	96817	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	1	197571984	197593211	15	-0.6854
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	1	197599030	232385909	22233	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	1	232386999	232387941	2	-1.6591
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	1	232393057	247813706	10042	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	2	484222	242476062	131255	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	2212571	81555894	46739	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	81559199	81586941	18	-0.4099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	81590210	83030408	775	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	83032546	83064178	21	-0.4483
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	83068067	90307672	3334	-0.01
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	90307877	90485962	20	-0.6948
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	3	93734671	197538677	55450	-0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	4	1053934	46776064	27420	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	4	46780070	46780570	2	-1.6662
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	4	46782575	66040446	8452	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	4	66048915	66064852	14	0.5526
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	4	66068368	188763651	66829	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	5	914233	180360469	100482	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	1014281	45859849	26987	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	45863443	45866682	6	-0.9533
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	45870421	67140293	9265	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	67143234	67147285	6	-0.9073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	67148659	98648235	17400	-0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	98652210	98652595	2	-1.666
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	98655062	102464140	2333	-0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	102470612	102485159	15	-0.5377
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	102489159	141303040	22828	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	141303479	141318880	10	-0.7307
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	6	141319040	170903919	17611	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	705284	2192919	407	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	2194529	2202374	2	-1.5124
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	2203345	16020299	7254	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	16023074	16023090	3	-1.8179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	16023130	137989706	63437	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	137994755	138002082	7	-0.905
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	7	138005264	158385118	10190	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	8	617667	105325830	57554	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	8	105329096	105329654	3	-1.9615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	8	105331137	145232496	23962	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	9	789932	14102612	7325	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	9	14103242	14103618	3	-1.4061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	9	14105813	140938752	60690	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	10	415240	135225087	80849	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	11	456120	100167252	54640	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	11	100171445	100184143	14	-0.5362
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	11	100192261	134142530	22580	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	12	889902	133161346	73933	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	13	19450806	114987458	56627	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	14	20501368	46586465	13199	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	14	46586533	46642513	25	-0.3705
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	14	46642962	63641417	10526	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	14	63641631	63641871	2	-1.8033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	14	63642200	105988038	25681	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	15	23687685	101884307	44517	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	16	653459	89379936	40792	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	17	987221	80917016	36983	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	18	329586	77109240	42650	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	19	284018	58878226	23943	-0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	20	455764	62219837	37279	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	21	15347621	44313979	19218	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	21	44315314	44320989	8	-1.2841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	21	44321919	47678774	1352	-0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	22	17423930	49331012	16923	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	X	3157107	25940771	9719	0.0357
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	X	25940991	25941259	2	-2.7637
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_B11_896490	X	25942067	154905589	54033	0.0014
