Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	1	3208470	245880329	129055	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	2	474222	242124735	131241	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	526235	17316472	9293	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	17317154	17319119	2	-1.3341
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	17319192	27784793	5612	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	27787379	27789515	7	-1.1166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	27792023	174067006	78799	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	174070568	174075482	3	-1.1244
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	174075956	199023074	12643	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	4	1043934	189836143	102695	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	967233	82097166	43928	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	82099604	82099796	2	-2.0731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	82102901	180293075	56545	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	959281	25054650	16837	-0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	25055751	25055784	2	1.3708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	25059178	51000687	13041	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	51001210	51001250	2	1.4886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	51007232	55257559	2848	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	55260614	55333043	53	0.5362
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	55345682	170745844	63652	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	7	671810	158077879	81284	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	607667	104759769	57208	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104760102	104760116	2	-1.9221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104762861	104914596	76	-0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104915385	104918369	2	-1.3646
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104919654	115519909	5524	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	115520520	115520753	2	-1.285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	115522473	145304484	18698	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	9	779932	140058573	68001	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	10	405240	135075077	80837	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	11	446120	133647740	77240	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	760163	75780812	41350	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	75784790	75859346	47	-0.9325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	75862895	131671419	32532	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	18348806	24976159	3294	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	24977627	24977717	2	-1.7228
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	24978503	106180636	48586	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	106182239	106182711	2	-1.3643
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	106183236	114005560	4747	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	19571208	34280752	7977	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	34280789	34280937	2	-1.4209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	34281566	105059083	41451	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	15	21238778	99701830	44519	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	16	593460	87907437	40853	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	933971	48153808	21018	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	48154573	48154902	3	-1.2639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	48160353	78510305	15960	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	18	319586	75210228	42645	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	19	235018	63570038	23943	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	20	403764	61690281	37274	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	14269492	24214615	5906	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	24214737	24221560	6	-0.8196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	24221629	46503202	14665	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	22	15803930	47717016	16922	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	3167107	88860863	34708	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	88863480	88868065	2	-1.816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	88869927	154558783	29058	0.0011
