Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	1	3218610	247813706	129111	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	2	484222	242476062	131233	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	2212571	17341468	9291	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	17342150	17344115	2	-1.3341
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	17344188	27809789	5613	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	27812375	27814511	7	-1.1166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	27817019	172584312	78794	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	172587874	172592788	3	-1.1244
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	3	172593262	197538677	12643	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	4	1053934	188763651	102700	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	914233	82061410	43929	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	82063848	82064040	2	-2.0731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	5	82067145	180360469	56544	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	1014281	24946671	16838	-0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	24947772	24947805	2	1.3708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	24951199	50892728	13042	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	50893251	50893291	2	1.4886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	50899273	55149600	2848	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	55152655	55225084	53	0.5362
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	6	55237723	170903919	63659	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	7	705284	158385118	81285	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	617667	104690593	57212	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104690926	104690940	2	-1.9221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104693685	104845420	76	-0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104846209	104849193	2	-1.3646
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	104850478	115450733	5528	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	115451344	115451577	2	-1.285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	8	115453297	145232496	18697	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	9	789932	140938752	68013	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	10	415240	135225087	80835	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	11	456120	134142530	77230	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	889902	77256681	41345	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	77260659	77335215	47	-0.9325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	12	77338764	133161346	32532	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	19450806	26078159	3294	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	26079627	26079717	2	-1.7228
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	26080503	107382635	48582	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	107384238	107384710	2	-1.3643
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	13	107385235	114987458	4747	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	20501368	35211001	7977	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	35211038	35211186	2	-1.4209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	14	35211815	105988038	41449	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	15	23687685	101884307	44517	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	16	653459	89379936	40787	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	987221	50798809	21017	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	50799574	50799903	3	-1.2639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	17	50805354	80917016	15961	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	18	329586	77109240	42642	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	19	284018	58878226	23943	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	20	455764	62219837	37277	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	15347621	25292744	5906	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	25292866	25299689	6	-0.8196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	21	25299758	47678774	14664	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	22	17423930	49331012	16921	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	3157107	88974207	34718	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	88976824	88981409	2	-1.816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C06_896478	X	88983271	154905589	29065	0.0011
