Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	3208470	234596272	121817	0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	234598664	234599404	2	-1.5667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	234599870	245880329	7190	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	2	474222	242124735	131199	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	526235	36567136	20480	0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	36567376	36567966	4	-0.9011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	36568475	44574505	4665	0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	44577324	44598780	12	-0.9326
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	44607499	80143039	20728	0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	80143067	80146412	3	-1.0784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	80153497	199023074	60438	0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	1043934	112431655	61550	-0.0226
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	112432291	112436250	2	-1.5676
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	112437259	189836143	41126	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	967233	24108374	13996	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	24109778	24110799	2	-1.1218
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	24110860	84864093	31469	-0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	84864669	84864696	3	-1.1292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	84866200	180293075	54988	-0.0289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	6	959281	170745844	96439	0.03
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	671810	24220690	12356	0.0294
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	24223842	24225298	6	-1.0482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	24231186	158077879	68915	0.0283
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	8	607667	83055634	45008	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	8	83064667	83064905	2	-1.6843
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	8	83066954	145304484	36461	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	779932	15286795	8319	-0.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	15287028	15370657	82	-0.7612
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	15372671	78142249	20475	-0.0306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	78147391	78158756	16	-0.8583
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	78158879	140058573	39096	-0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	10	405240	135075077	80825	-0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	11	446120	133647740	77221	-0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	760163	3241072	1129	-0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	3241452	3267129	3	-1.1344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	3268728	131671419	72777	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	18348806	21382207	1327	-0.0356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	21382411	21382460	2	1.3976
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	21382841	114005560	55285	-0.0333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	14	19571208	105059083	49419	0.0259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	15	21238778	99701830	44504	0.0255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	16	593460	87907437	40845	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	17	933971	78510305	36972	-0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	319586	29231935	15648	-0.0358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	29234265	29248324	10	-0.5163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	29252129	75210228	26977	-0.0374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	19	235018	63570038	23943	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	20	403764	61690281	37268	0.0266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	21	14269492	46503202	20576	0.0045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	22	15803930	47717016	16914	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	3167107	56023771	23052	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	56024975	56025475	2	-3.0467
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	56027096	105301384	18085	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	105301785	105309255	3	-2.6899
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	105309666	122120339	7978	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	122121121	122121341	2	-3.8427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	122122170	154558783	14482	0.0047
