Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	3218610	236529649	121874	0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	236532041	236532781	2	-1.5667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	1	236533247	247813706	7189	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	2	484222	242476062	131191	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	2212571	36592132	20479	0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	36592372	36592962	4	-0.9011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	36593471	44599501	4665	0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	44602320	44623776	12	-0.9326
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	44632495	80060349	20726	0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	80060377	80063722	3	-1.0784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	3	80070807	197538677	60435	0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	1053934	112212206	61551	-0.0226
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	112212842	112216801	2	-1.5676
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	4	112217810	188763651	41130	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	914233	24072617	13998	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	24074021	24075042	2	-1.1218
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	24075103	84828337	31468	-0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	84828913	84828940	3	-1.1292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	5	84830444	180360469	54987	-0.0289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	6	1014281	170903919	96448	0.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	705284	24254165	12358	0.0295
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	24257317	24258773	6	-1.0482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	7	24264661	158385118	68914	0.0283
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	8	617667	145232496	81478	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	789932	15296795	8320	-0.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	15297028	15380657	82	-0.7612
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	15382671	78952429	20481	-0.0306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	78957571	78968936	16	-0.8583
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	9	78969059	140938752	39101	-0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	10	415240	135225087	80823	-0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	11	456120	134142530	77211	-0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	889902	3370811	1129	-0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	3371191	3396868	3	-1.1344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	12	3398467	133161346	72772	-0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	19450806	22484207	1327	-0.0356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	22484411	22484460	2	1.3976
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	13	22484841	114987458	55281	-0.0333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	14	20501368	105988038	49417	0.0259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	15	23687685	101884307	44502	0.0255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	16	653459	89379936	40779	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	17	987221	80917016	36972	-0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	329586	30977937	15648	-0.0358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	30980267	30994326	10	-0.5163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	18	30998131	77109240	26974	-0.0374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	19	284018	58878226	23943	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	20	455764	62219837	37271	0.0266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	21	15347621	47678774	20575	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	22	17423930	49331012	16913	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	3157107	56007046	23054	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	56008250	56008750	2	-3.0467
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	56010371	105414728	18098	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	105415129	105422599	3	-2.6899
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	105423010	122292658	7980	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	122293440	122293660	2	-3.8427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_C12_896530	X	122294489	154905589	14482	0.0048
