Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	3218610	46911993	22931	0.2264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	46920087	57343256	6014	-0.0328
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	57343327	57547310	205	-0.3825
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	57547703	59210415	1354	-0.0565
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	59214425	76136545	10663	0.2646
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	76137606	79662693	2025	-0.39
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	79667826	80361955	424	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	80362865	80389928	21	-0.2887
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	80390441	86156315	3720	0.0956
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	86186754	86519282	249	-0.3557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	86519979	87785597	739	0.1737
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	87786703	93608881	3510	-0.374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	93613188	93883211	121	0.1302
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	93883435	93942594	25	0.5008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	93942844	95674710	1190	0.1226
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	95676511	95676518	2	-0.8108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	95680124	98322379	1590	0.0315
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	98324788	99298278	489	-0.3847
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	99302782	106528420	3858	0.0644
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	106529080	106836338	219	-0.1901
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	106837706	111304154	2597	0.0807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	111306687	112421221	722	0.3533
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	112421677	115773162	2111	-0.0206
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	115773520	115776964	5	-0.758
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	115777538	116151255	235	0.1884
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	116154831	120517946	2712	-0.0641
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	120517959	243044281	59042	-0.3711
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	1	243355772	247813706	2172	0.209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	2	484222	6882429	3682	0.3027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	2	6883457	6902728	19	-0.258
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	2	6906901	26676395	12568	0.3113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	2	26677303	26677560	2	-0.7553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	2	26678496	242476062	114950	0.3026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	3	2212571	118719480	65043	0.178
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	3	118835933	119254637	241	-1.4209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	3	119255746	155702536	19867	0.173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	3	155703559	155706888	3	-1.6003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	3	155712885	197538677	21167	0.1717
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	1053934	24064621	14280	0.1915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	24065895	24067796	3	-0.9621
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	24070552	121680599	52700	0.1672
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	121685950	121767167	58	-0.1194
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	121767758	176699362	29709	0.1629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	176700366	176700465	2	-1.4743
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	4	176700569	188763651	5935	0.1688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	914233	4012303	1928	0.1819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	4012694	4012700	2	-1.372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	4013641	103472595	52285	0.1773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	103480433	113320137	5894	-0.4052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	113320355	113321898	3	-2.1241
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	113321924	123092028	5643	-0.404
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	123093322	123094245	2	-2.3319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	123097208	180359926	34626	-0.3841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	5	180360389	180360469	2	0.1634
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	1014281	1286633	273	-0.391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	1289462	1655509	265	-0.0664
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	1656096	6456020	3405	-0.3766
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	6456084	7595126	839	-0.0275
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	7601720	24758373	11914	-0.3796
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	24763017	24764788	4	-1.8522
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	24764922	25276157	345	-0.3763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	25276266	25283033	5	-1.4138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	25283097	73459126	22875	-0.3747
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	73459390	73459627	2	-2.9283
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	6	73459762	170903919	56409	-0.3887
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	705284	27696265	14777	0.8572
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	27696592	27696949	4	-0.3301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	27700482	45815735	11167	0.8523
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	45819833	45829595	2	-0.9519
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	45832066	70705397	10756	0.843
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	70705422	97884218	13180	0.5551
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	97885725	97885987	3	1.5255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	7	97888009	158385118	31406	0.5604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	617667	9195378	3709	0.1818
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	9196740	9198107	5	-0.8665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	9198381	67782541	32482	0.1841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	67789812	67820829	13	-0.3751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	67824124	99257517	17961	0.1638
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	99257746	99289990	12	-0.2998
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	8	99292714	145232496	27307	0.1839
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	9	789932	100533466	43013	-0.3713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	9	100534147	100534823	2	-2.3186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	9	100535267	140938752	24857	-0.355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	10	415240	66902844	38306	-0.7886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	10	66902922	66925446	22	-1.4695
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	10	66929070	135225087	42102	-0.7803
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	11	456120	127452270	72808	-0.078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	11	127452980	127453183	2	-1.949
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	11	127456128	134142530	4357	-0.0722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	12	889902	133161346	73908	0.1872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	13	19450806	29238153	5611	-0.0704
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	13	29238352	29238827	2	-1.3908
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	13	29238898	114987458	50977	-0.0786
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	14	20501368	74420476	30064	-0.0611
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	14	74423777	74423782	2	1.484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	14	74425056	79928937	3571	-0.0456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	14	79931419	105988038	15707	-0.7892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	15	23687685	24186400	369	-0.0773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	15	24191389	24202589	12	0.5764
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	15	24203837	101884307	44109	-0.0427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	16	653459	89379936	40786	0.2103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	987221	1277174	67	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	1280195	1280279	2	-1.2355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	1281517	4577112	1483	-0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	4578007	4580577	5	-1.3761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	4580832	51745434	19824	-0.0278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	51752802	52278906	329	-0.4132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	52285159	53666673	935	-0.0962
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	53670431	54227157	464	-0.3444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	54227307	54350160	82	-0.7871
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	54350371	54856775	428	-0.3947
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	54858579	54917200	42	-0.0535
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	54918840	55311868	267	-0.3652
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	55312103	59396449	2080	-0.0371
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	59407958	59441648	25	0.7655
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	59442173	64003979	2263	0.3356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	64010003	64053672	32	0.7399
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	64053798	65688825	1029	0.4065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	65692977	69591111	2542	-0.0784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	69591987	69634675	33	-0.382
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	69640574	71118914	1179	-0.0395
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	71120586	71739086	409	-0.3531
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	71752086	71810482	42	-0.8817
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	71810713	74375959	676	-0.3116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	74376772	74764546	231	-0.0264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	74832536	77756485	1279	0.3264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	77756760	77851318	56	0.0911
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	77852795	77852949	4	-0.6361
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	77856615	77938807	69	0.0862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	77944305	78160930	103	0.3844
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	78161016	79788623	574	-0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	79802752	80645986	248	-0.7126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	80646086	80646184	3	0.4305
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	17	80648318	80917016	146	-0.7831
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	18	329586	61843684	35202	-0.0665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	18	61846752	62390337	199	-0.4097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	18	62396203	77109240	7217	-0.0734
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	19	284018	23387840	8564	-0.301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	19	23393286	23393877	2	-2.9975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	19	23394336	33507781	4178	-0.357
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	19	33510042	33565640	23	0.3466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	19	33569500	58878226	11152	-0.3128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	20	455764	62219837	37270	0.1999
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	21	15347621	47678774	20572	0.1864
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	17423930	17468517	30	1.2993
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	17469757	17597559	80	0.9674
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	17603477	17752794	74	1.4426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	17756634	17757392	3	0.2088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	17760350	18613737	570	1.1837
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	22	22096802	49331012	16156	0.4307
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	3157107	118206617	47175	-0.0714
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	118211689	118261778	39	0.6913
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	118265642	124685331	3327	-0.079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	124688208	124713763	18	0.6693
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	124717907	127140443	974	-0.0628
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	127244860	131927392	2028	0.6525
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	131930713	132495827	288	-0.063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	132496323	132496732	2	-2.8975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	132498010	133630196	507	-0.0788
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	133635921	138733167	2482	0.6715
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	139505277	142726544	1361	-0.0835
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	142727398	143349416	323	0.6524
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	143354277	144281664	519	-0.08
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	144291970	144397756	95	0.6733
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	144401484	145717058	887	-0.0929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	145717634	145778003	38	0.6891
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	145779726	146939903	715	-0.0933
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	146941485	149783278	1326	0.6822
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D04_896614	X	149784937	154905589	1530	-0.0441
