Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	1	3208470	245880329	129046	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	2	474222	242124735	131245	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	526235	154947371	84077	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	154948115	154951921	4	-1.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	154956376	199023074	22267	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	1043934	130415038	71454	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	130417246	130417915	2	-1.7965
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	130419015	166187568	19526	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	166187723	166187988	2	-1.1252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	166189178	176936356	5781	-0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	176937360	176937459	2	-1.4708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	176937563	178697256	1144	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	178701501	178705030	3	-0.8637
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	178711891	189836143	4790	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	967233	104004374	54516	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	104006584	104007160	5	-1.0794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	104008892	111964823	4592	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	111969737	111971451	3	-0.9817
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	111972645	114784354	1919	0.0119
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	114784536	114784761	5	-0.8827
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	114786977	128907056	8167	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	128908909	128909074	3	-1.5198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	128910227	133060032	2316	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	133060113	133076477	9	-1.2882
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	133081590	162420434	18255	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	162420588	162435152	3	-1.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	162443943	172320818	6494	-0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	172323299	172323506	2	-1.3581
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	172325179	180293075	4191	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	959281	48395761	28545	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	48397473	48397592	2	-1.3796
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	48403148	96074077	23608	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	96075712	96076596	3	-1.0205
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	96084834	139260807	25761	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	139263543	139263631	3	-1.1281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	139264227	147182238	4391	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	147182432	147182462	2	-1.1678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	147184772	148755396	1102	-0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	148756317	148764802	2	-1.4179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	148765438	170745844	13038	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	7	671810	14693652	6810	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	7	14697226	14697348	3	-1.1455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	7	14700020	158077879	74478	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	8	607667	145304484	81509	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	779932	74470431	26414	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	74474379	74474889	3	-1.2224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	74475723	140058573	41593	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	405240	122306089	72751	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	122306307	122306314	2	-1.5859
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	122307322	134410801	7996	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	134718443	134767287	10	1.0598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	134771125	135075077	93	-0.0368
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	446120	4580750	1659	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	4581008	4581596	3	-1.1182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	4582666	133647740	75576	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	12	760163	131671419	73933	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	18348806	43725881	16039	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	43727170	43733442	8	-1.061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	43734037	114005560	40583	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	19571208	40672644	11390	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	40676601	40676636	3	-1.3143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	40676649	83025560	24874	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	83028664	83028852	3	-1.1108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	83032482	105059083	13162	-0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	21238778	52695241	16569	-0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	52695342	52695713	2	-1.268
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	52697885	74972957	13519	-0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	74973781	74981486	3	-0.9983
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	74982541	83137810	4251	-0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	83137818	83137949	2	-2.149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	83138257	99701830	10153	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	16	593460	87907437	40853	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	17	933971	78510305	36982	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	18	319586	75210228	42651	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	235018	21502795	7894	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21509143	21513514	2	-1.7937
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21514145	21569168	27	0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21569306	21569546	3	-0.8842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21571795	22829787	470	0.0227
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	22830175	22838987	2	-1.2892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	22843137	63570038	15548	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	403764	1811025	803	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	1811198	1812788	3	-1.2845
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	1813198	61690281	36466	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	21	14269492	46503202	20577	-0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	15803930	25909317	3225	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	25910688	25911265	2	-1.0645
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	25914176	30830058	2899	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	30830263	30830274	2	-1.3751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	30833675	47717016	10792	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	3167107	14073189	4196	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	14073370	14077199	5	-2.169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	14077486	49643733	16577	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	49645633	49646485	2	-2.8979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	49650101	115531280	25108	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	115532694	115577102	33	1.0507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	115578668	154558783	17723	0.0109
