Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	1	3218610	247813706	129102	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	2	484222	123526105	64605	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	2	123526388	123526710	2	-1.4761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	2	123535456	242476062	66630	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	2212571	153464681	84072	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	153465425	153469231	4	-1.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	3	153473686	197538677	22266	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	1053934	130195588	71458	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	130197796	130198465	2	-1.7965
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	130199565	165968118	19528	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	165968273	165968538	2	-1.1252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	165969728	176699362	5781	-0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	176700366	176700465	2	-1.4708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	176700569	178460262	1144	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	178464507	178468036	3	-0.8637
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	4	178474897	188763651	4789	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	914233	103976475	54516	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	103978685	103979261	5	-1.0794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	103980993	111936924	4592	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	111941838	111943552	3	-0.9817
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	111944746	114756455	1918	0.012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	114756637	114756862	5	-0.8827
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	114759078	128879157	8168	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	128881010	128881175	3	-1.5198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	128882328	133032133	2316	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	133032214	133048578	9	-1.2882
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	133053691	162487856	18253	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	162488010	162502574	3	-1.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	162511365	172388212	6495	-0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	172390693	172390900	2	-1.3581
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	5	172392573	180360469	4192	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	1014281	48287802	28545	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	48289514	48289633	2	-1.3796
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	48295189	95967356	23610	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	95968991	95969875	3	-1.0205
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	95978113	139219114	25766	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	139221850	139221938	3	-1.1281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	139222534	147140545	4393	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	147140739	147140769	2	-1.1678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	147143079	148713703	1102	-0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	148714624	148723109	2	-1.4179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	6	148723745	170903919	13038	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	7	705284	158385118	81292	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	8	617667	145232496	81516	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	789932	75280611	26420	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	75284559	75285069	3	-1.2224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	9	75285903	140938752	41599	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	415240	122316099	72749	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	122316317	122316324	2	-1.5859
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	122317332	134560811	7996	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	134868453	134917297	10	1.0598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	10	134921135	135225087	93	-0.0368
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	456120	4624174	1658	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	4624432	4625020	3	-1.1182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	11	4626090	134142530	75567	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	12	889902	133161346	73928	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	19450806	44827881	16037	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	44829170	44835442	8	-1.061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	13	44836037	114987458	40581	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	20501368	41602894	11389	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	41606851	41606886	3	-1.3143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	41606899	83955807	24872	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	83958911	83959099	3	-1.1108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	14	83962729	105988038	13163	-0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	23687685	85336806	34343	-0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	85336814	85336945	2	-2.149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	15	85337253	101884307	10152	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	16	653459	89379936	40787	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	17	987221	80917016	36982	-0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	18	329586	77109240	42648	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	284018	21710955	7894	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21717303	21721674	2	-1.7937
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21722305	21777328	27	0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21777466	21777706	3	-0.8842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	21779955	23037947	470	0.0227
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	23038335	23047147	2	-1.2892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	19	23051297	58878226	15548	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	455764	1863025	805	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	1863198	1864788	3	-1.2845
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	20	1865198	62219837	36467	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	21	15347621	47678774	20576	-0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	17423930	27579317	3225	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	27580688	27581265	2	-1.0645
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	27584176	32500058	2898	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	32500263	32500274	2	-1.3751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	22	32503675	49331012	10792	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	3157107	14163268	4198	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	14163449	14167278	5	-2.169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	14167565	49756993	16576	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	49758893	49759745	2	-2.8979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	49763361	115617252	25124	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	115618666	115663074	33	1.0507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D09_896600	X	115664640	154905589	17723	0.0109
