Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	1	3208470	76079248	41226	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	1	76079326	76083076	2	-1.4142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	1	76083879	179014940	45421	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	1	179017196	179020106	4	-1.5152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	1	179022284	245880329	42399	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	2	474222	211343147	112481	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	2	211343503	211346929	5	-1.2414
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	2	211354224	242124735	18761	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	3	526235	199023074	106365	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	4	1043934	61009907	33522	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	4	61012589	61014212	2	1.2609
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	4	61018159	137077504	40969	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	4	137080188	137084121	2	-2.0738
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	4	137084417	189836143	28212	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	5	967233	180293075	100477	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	959281	124297077	68310	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	124298164	124299042	5	-1.1299
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	124303013	129278360	2866	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	129278647	129283903	3	-1.2339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	129286687	134943914	3855	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	134946008	134946217	2	-1.1261
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	134946712	135377122	285	-0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	135383947	135384931	2	-1.0585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	135391263	137696585	1537	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	137697541	137697584	2	-1.4833
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	137699675	148543637	6410	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	148548305	148548637	2	-1.7211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	6	148548948	170745844	13171	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	7	671810	127291812	65076	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	7	127293316	127293898	2	-1.5725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	7	127295227	144823250	9372	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	7	144823651	144823826	2	-1.6867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	7	144823878	158077879	6842	0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	8	607667	115032167	62592	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	8	115049633	115123321	52	-0.9378
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	8	115128524	122448474	4578	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	8	122448653	122456271	2	-1.4793
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	8	122457268	145304484	14279	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	9	779932	1728753	400	-0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	9	1730278	1730718	4	-1.3675
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	9	1732582	140058573	67601	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	10	405240	135075077	80844	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	11	446120	133647740	77239	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	12	760163	131671419	73927	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	13	18348806	114005560	56632	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	14	19571208	105059083	49438	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	15	21238778	99701830	44522	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	16	593460	87907437	40854	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	933971	28784873	12789	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	28790354	28792776	3	-1.0624
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	28793071	51118052	9950	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	51123618	51131505	15	-1.2328
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	51135519	52204495	874	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	52205165	52205328	2	-1.1464
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	52208837	76823702	12800	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	76862393	76862915	2	-1.3468
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	76867997	78164794	356	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	78164984	78165222	2	1.2024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	17	78165917	78510305	183	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	18	319586	45198132	25459	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	18	45198482	45206652	3	-1.3615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	18	45207237	75210228	17185	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	19	235018	63570038	23948	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	20	403764	61690281	37275	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	21	14269492	46503202	20580	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	22	15803930	43826633	14126	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	22	43826849	43827434	2	-1.426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	22	43827774	47695531	2770	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	22	47696406	47696415	2	-1.1852
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	22	47696471	47717016	20	-0.0617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	X	3167107	146674765	60782	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	X	146676285	146676347	2	-3.3988
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D11_896462	X	146676441	154558783	2908	0.0032
