Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	1	3218610	247813706	129129	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	2	484222	242476062	131264	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	3	2212571	197538677	106363	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	4	1053934	188763651	102723	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	5	914233	180360469	100490	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	6	1014281	170903919	96472	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	7	705284	158385118	81299	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	8	617667	63288159	33816	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	8	63288162	63292210	2	-1.536
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	8	63292918	133983403	41361	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	8	133984469	133984792	2	-1.3577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	8	133985019	145232496	6344	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	9	789932	140938752	68024	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	10	415240	135225087	80853	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	11	456120	134142530	77242	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	12	889902	133161346	73940	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	13	19450806	114987458	56636	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	14	20501368	70578956	27747	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	14	70580130	70586967	3	1.1367
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	14	70587589	74420476	2334	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	14	74423777	74423782	2	1.6053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	14	74425056	105988038	19354	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	15	23687685	101884307	44522	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	16	653459	5829551	2113	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	16	5830105	5832328	2	-1.5009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	16	5832946	89379936	38680	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	17	987221	55820940	24339	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	17	55824949	55825388	4	-1.4209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	17	55825470	80917016	12643	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	18	329586	67959491	38310	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	18	67960314	67961864	5	-0.8784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	18	67963771	77109240	4336	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	19	284018	11163689	3728	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	19	11168662	11169052	2	-1.4578
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	19	11177408	58878226	20215	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	20	455764	62219837	37281	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	21	15347621	47678774	20580	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	22	17423930	49331012	16921	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	X	3157107	121420716	48671	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	X	121420738	121420758	2	-2.4933
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_D12_896534	X	121421159	154905589	15068	0.0062
