Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	61735	72768418	43051	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	72768498	72811148	47	1.4419
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	72811904	81888456	5786	-0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	81888602	81888605	2	2.2315
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	81888667	106013376	15246	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	106019205	106022344	15	0.5963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	106022360	111376220	3530	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	111377368	111388226	39	-0.7945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	111392067	121184898	6222	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	121185021	121192495	5	0.9588
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	121193600	147929336	1202	-0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	148513790	148789461	35	-0.4448
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	148789848	152555706	1681	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	152555767	152586278	31	1.6887
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	152586540	169216937	11550	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	169233974	169241766	7	-2.4114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	169242401	196741316	18221	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	196741367	196749217	12	-0.7734
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	196749821	247938411	35385	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	247938748	247938857	2	1.8973
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	247938998	248737447	466	-0.0425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	248749194	248808557	35	-0.6371
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	248808864	249224388	143	0.0506
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	12784	7639373	5925	-0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	7643065	7646972	2	1.6649
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	7647007	34652871	18172	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	34659936	34740799	63	0.4151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	34741027	35975973	872	-0.0113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	35977790	35987947	7	-1.5126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	35997473	52739217	12161	-0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	52741737	52781542	42	0.4487
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	52787949	87128201	22008	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	87129203	87137385	2	-2.1278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	87161853	89593755	867	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	89596294	91789712	208	-0.7073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	91790075	146862085	30545	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	146864404	146866934	24	0.6525
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	146877806	164636852	10600	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	164643488	164645126	5	-1.1299
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	164646642	185316676	13112	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	185316880	185318046	2	1.5444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	185318551	213181315	16341	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	213181322	213192178	29	-0.8409
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	213192217	229759479	10824	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	229759646	229765383	14	0.513
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	229766023	241452956	7514	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	241453308	241454195	10	-0.8482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	241456233	243089456	705	0.0198
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	60345	26613201	20083	-0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	26614974	26614982	6	-1.0727
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	26614984	53032038	15722	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	53033148	53034180	6	0.9465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	53034226	68746164	12053	-0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	68746259	68747413	14	-1.0641
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	68748758	98934512	15951	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	98934604	98948802	27	-0.4282
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	98948912	131989330	20264	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	131989347	131995684	5	-1.4062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	132000477	136019099	2589	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	136022951	136025426	2	-2.9465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	136038541	145633406	5858	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	145641922	145642365	3	-1.2342
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	145642413	162714517	10531	-0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	162717727	162719562	2	-2.396
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	162726159	192874747	19124	-0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	192877902	192879006	7	0.9384
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	192880473	195285664	1499	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	195285898	195474763	48	0.479
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	195478694	197896118	1173	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	12281	34630	20	-0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	35359	74983	48	-0.3979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	75023	3599450	1443	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	3599869	3602184	2	-2.2026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	3609390	4939556	806	0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	4939994	4942822	4	-1.8239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	4943134	9456977	2927	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	9461230	9479345	9	-0.8808
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	9486087	10210390	545	0.0228
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	10214160	10234266	31	0.4334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	10234608	34778860	16996	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	34778962	34829872	45	-0.3242
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	34829913	64690878	16582	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	64691407	64708258	33	0.3582
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	64716431	69284591	2864	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	69288138	69288142	3	-1.7691
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	69294799	69338462	10	-0.0313
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	69338564	69521409	75	0.5132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	69528959	104745571	21422	-0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	104751630	104751637	5	1.0914
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	104751644	115173700	6311	-0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	115175323	115184310	27	0.5686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	115184322	130062751	8734	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	130067546	130068160	2	-2.7978
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	130072563	138092239	4521	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	138092420	138092907	9	-0.8763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	138092926	161873912	14774	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	161873925	161884908	24	-0.6961
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	161884919	172369346	6678	-0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	172374884	172374949	2	-1.7017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	172375027	172377444	6	-0.4819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	172377458	172987928	401	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	172989148	173001831	17	0.6695
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	173002046	189221258	10939	-0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	189221360	189221439	4	1.7737
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	189222813	191027923	1176	-0.0208
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	15532	685748	307	-0.0106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	698371	779860	30	0.4369
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	779881	57321646	35568	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	57326027	57333533	32	1.6844
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	57338357	62558371	3430	-0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	62559714	62560237	2	-1.3103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	62561062	75450020	7032	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	75450067	75450144	3	1.3207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	75450176	104433422	16857	-0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	104433594	104498395	44	-3.6994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	104502967	151514171	30315	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	151515386	151518351	14	-1.6898
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	151520271	180790320	19512	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	149661	257353	102	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	258265	294837	22	-0.6029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	302306	8922190	7095	-0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	8925346	8934992	14	-1.0917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	8935229	32622194	15774	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	32624304	32626618	6	-1.1149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	32650612	32690027	45	0.0678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	32690797	32690812	2	2.7345
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	32690830	41618761	5884	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	41619050	41619247	2	-1.369
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	41619689	53931067	7814	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	53931084	53935415	10	0.7285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	53935698	65336942	4355	-0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	65347544	65348992	2	-1.8875
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	65350776	67011601	1110	-0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	67024334	67043889	41	0.2823
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	67043923	69653759	1842	-0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	69657055	69661241	2	1.4722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	69662367	77014948	4649	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77016900	77016926	3	1.8223
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77016993	77027781	31	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77032953	77033209	3	1.1672
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77033384	77088987	40	0.0667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77092609	77096828	3	-1.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77105446	77436532	219	-0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77439868	77467931	23	-0.6711
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	77468466	78352766	598	-0.0508
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	78355600	78356107	5	-1.4038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	78356239	78971802	380	-0.0226
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	78971834	79027770	100	0.376
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	79032317	103734829	15492	-0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	103737976	103759725	40	0.6777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	103759825	161031718	36985	-0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	161031765	161033283	13	-0.586
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	161068042	171051005	7267	-0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	43355	19220308	13625	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	19220321	19222171	13	0.5901
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	19224330	19573763	300	-0.027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	19573784	19589830	11	-0.5673
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	19594026	22434780	2156	-0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	22435472	22436487	2	-2.4314
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	22438754	26132290	2766	-0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	26142392	26145413	4	-1.1609
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	26147219	53316829	18941	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	53318387	53318785	2	-2.3285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	53321683	54386505	755	-0.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	54386509	54386517	5	-2.446
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	54393488	70420438	6295	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	70423250	70426141	2	-1.963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	70428243	84212822	7689	-0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	84218035	84227056	7	-1.0793
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	84227474	88245341	2263	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	88246221	88246554	2	-1.4356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	88247104	91357869	2142	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	91358294	91358540	3	1.4029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	91358771	109437092	10406	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	109437093	109437677	11	0.69
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	109437680	126046543	10071	-0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	126046600	126046615	2	1.6093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	126046876	142474653	10432	-0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	142474939	142486115	29	0.3907
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	142486345	159127004	10578	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	31254	594944	328	-0.0286
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	594973	595875	7	0.8435
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	595892	595908	2	3.8585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	601043	2701934	1785	-0.0164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	2703533	2703899	7	-1.438
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	2707171	5598726	3969	-0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	5598735	5604300	24	-0.6002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	5604327	12232416	5197	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	12233640	12247486	36	-0.6676
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	12260927	16262235	3598	-0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	16262247	16278695	28	-0.5155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	16282587	23402308	5724	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	23407740	23407871	5	-1.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	23407905	24974577	1144	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	24975500	24976641	5	-0.6269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	24976675	24979906	7	-0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	24979929	24984333	11	-0.5066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	24991104	51032011	13693	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	51032024	51032387	7	-1.7871
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	51038578	112295038	37471	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	112295081	112295260	4	-2.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	112300281	146298155	22936	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	46587	68183981	31669	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	68186051	68186057	4	2.1055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	68186059	141091394	48268	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	72759	24377674	19246	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	24377675	24377682	6	-1.864
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	24377918	57180153	18418	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	57180241	57180317	3	-1.5171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	57180321	57587929	314	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	57588292	57590768	2	1.709
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	57593097	61364115	2723	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	61364130	61365805	11	0.6243
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	61366264	67306276	4022	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	67307923	67314401	26	-0.4725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	67314430	135506704	46331	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	198510	3486724	1348	0.0162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	3487665	3488541	3	-1.4356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	3506526	4970367	1135	0.012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	4972005	4975705	21	-1.5141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	4976257	4977082	16	-0.401
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	4978382	5787405	783	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	5788080	5808326	28	-0.4412
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	5808340	6107790	244	0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	6108269	6116843	4	-1.4557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	6117014	51096372	30696	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	51126742	51183906	9	-1.3879
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	51192870	54720024	140	-0.0321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	54720823	54758291	2	1.5359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	54773893	86305661	18105	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	86305813	86306054	5	-1.3569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	86315174	91830489	3569	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	91830658	91831043	2	2.8618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	91832704	97133088	3771	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	97133112	97233118	68	-0.8749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	97235655	133817472	26370	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	133817656	133818097	2	1.6507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	133819442	134944770	840	0.0615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	150442	355842	115	0.099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	356439	357311	2	2.0708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	357319	11220724	7158	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	11220827	11241532	11	-1.0413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	11251874	133778189	77803	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	19026949	24630915	3682	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	24632140	24632677	3	-1.5551
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	24633050	38071135	9883	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	38072036	38088387	19	0.539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	38088609	51545054	9124	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	51546911	51549198	2	2.3513
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	51549557	57778380	3448	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	57789714	57796630	6	-1.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	57801201	57841784	32	-0.0481
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	57842025	57847873	7	-1.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	57851813	115108397	38114	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	19002124	19600435	42	-0.0728
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	19602674	20423372	148	0.4173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	20424926	22393521	1355	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	22393545	22404635	25	-0.394
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	22404674	37335588	9642	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	37335870	37336635	4	1.1965
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	37336972	40608928	1894	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	40613922	40616919	2	-2.3076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	40618165	41610496	722	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	41610690	41653977	12	-0.8156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	41657249	42855165	765	0.0162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	42855466	42855717	3	-1.3161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	42856976	106274265	40454	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106275333	106428390	55	0.3343
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106429968	106578247	62	-0.0476
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106580546	106776973	95	0.5029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106777343	106821736	13	-0.5508
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106825916	106868286	26	-0.0488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106868554	106912630	45	0.3243
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	106914194	107285437	233	-0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	20016328	20247155	52	-0.042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	20262236	22681250	370	-0.6891
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	22751094	83068590	37622	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	83083151	83108839	4	-1.6459
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	83169549	102469040	14021	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	60777	19944363	13530	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	19945650	19963123	24	-0.5978
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	19965338	55796594	13777	-0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	55798222	55798779	3	2.7623
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	55804348	90287535	25107	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	526	665044	337	0.0247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	667243	667377	2	1.7851
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	678491	902322	128	-0.0356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	903819	936488	10	0.6874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	936851	34436708	17921	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	34437128	34485091	37	0.8963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	34528125	44364170	5206	0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	44394412	44752283	47	-0.4365
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	44752300	78628863	20652	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	78629793	78634179	2	2.0499
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	78634300	81049726	963	0.0139
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	18	11543	78015057	50820	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	19	90910	35849221	16822	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	19	35849309	35866801	27	-0.4952
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	19	35866954	59097854	12505	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	61305	1582207	1242	0.0213
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	1590257	1593893	5	-1.6097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	1597946	53628230	34656	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	53628374	53631463	2	1.8003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	53631579	62956153	6600	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	21	10736871	48096957	24411	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	16052528	24330218	4617	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	24330269	24331967	2	-2.5805
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	24332625	24344422	5	-0.095
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	24350529	24396814	19	0.746
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	24401529	40793260	11590	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	40794590	40797672	3	-1.4326
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	40800071	42897282	1198	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	42899440	42980051	36	0.3905
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	42981167	51234455	6095	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	X	168477	155182354	84608	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	2650438	6117910	877	-2.3418
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	6120432	6296423	80	-3.6987
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	6299046	15590276	2620	-2.8107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	15590342	15594523	3	-7.6439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	15594889	19574890	2083	-2.8386
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	19576544	20970746	648	-3.3845
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	20971498	20972173	2	-8.1584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	20972409	21088485	54	-3.3811
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	21092444	24510518	1242	-2.8722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	24514859	27274970	495	-3.4366
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	27298371	27720551	95	-2.6355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	27721084	28457337	259	-3.503
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	Y	28458648	59018259	175	-2.5157
