Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	1	3208470	245880329	129049	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	2	474222	242124735	131247	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	3	526235	199023074	106358	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	1043934	4990457	1689	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	4990895	4993723	4	-1.8239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	4	4994035	189836143	101007	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	5	967233	180293075	100475	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	6	959281	170745844	96443	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	671810	53284323	31322	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	53285881	53286279	2	-2.3285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	7	53289177	158077879	49961	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	8	607667	145304484	81516	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	779932	3870973	2078	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	3871005	3871013	2	-1.3191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	3871132	25681032	13701	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	25685174	25686292	4	-1.1575
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	9	25692960	140058573	52211	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	10	405240	135075077	80842	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	446120	96638298	52695	0.0049
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	96638322	96738328	68	-0.8742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	11	96740865	133647740	24479	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	12	760163	131671419	73927	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	13	18348806	114005560	56631	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	14	19571208	105059083	49432	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	21238778	96178634	42622	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	96178648	96181121	3	-1.1298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	15	96182766	99701830	1893	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	16	593460	87907437	40851	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	17	933971	78510305	36978	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	18	319586	75210228	42648	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	19	235018	63570038	23943	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	403764	29628788	16985	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	29631342	29632401	3	-1.3696
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	20	29632913	61690281	20286	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	21	14269492	46503202	20579	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	22	15803930	47717016	16922	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	X	3167107	88860863	34705	0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	X	88863480	88868065	2	-1.629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E01_896538	X	88869927	154558783	29059	0.0023
