Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	3208470	83121558	45411	0.0587
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	83122228	83193529	50	0.5365
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	83204297	92552612	5899	0.0751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	92556809	92557626	2	-1.7235
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	92559330	185872674	39673	0.0626
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	185873754	199007598	7585	-0.2903
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	199014490	224201094	16431	0.0575
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	224203213	224203346	2	-2.3553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	224203742	239580258	10557	0.0484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	239580459	239585221	2	-1.6887
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	1	239585539	245880329	3272	0.0544
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	2	474222	160478825	84252	0.0842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	2	160479821	160567481	71	0.5138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	2	160568397	242124735	46809	0.0833
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	526235	19570906	10380	0.0633
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	19574700	49077417	16936	-0.2862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	49087682	49536434	144	0.2152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	49538589	65555798	9465	-0.2928
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	65560578	65631717	56	0.357
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	65633342	85060700	11271	-0.2992
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	3	85068333	199023074	57949	0.0629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	4	1043934	86074648	46808	0.2608
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	4	86075144	86165310	44	0.6641
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	4	86169146	147234746	33486	0.3191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	4	147238138	148944958	1007	0.7031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	4	148948720	189836143	21318	0.3196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	967233	1361552	60	0.7913
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	1362074	1481514	62	-0.2515
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	1943233	3414165	1255	0.3115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	3414181	4041440	507	-0.3221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	4044136	4159399	101	0.3495
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	4159438	5236700	837	-0.2865
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	5236783	5237252	2	-1.9906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	5238367	5835068	501	-0.2657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	5835545	5839036	4	-1.7375
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	5839107	17064770	7161	-0.2834
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	17078053	17448269	203	0.311
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	17448944	17469655	13	-0.2595
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	17471330	17511474	34	0.3121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	17791935	19570585	988	-0.256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	19572843	20831653	529	0.3339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	20838978	20934168	16	-0.1651
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	20938950	23855232	1558	0.6998
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	23857415	25598957	827	0.3316
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	25599877	25618292	9	-0.208
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	25618693	25633905	9	0.458
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	25635178	25947870	198	-0.2462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	25956158	27361532	800	0.3129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	27363094	27752937	176	-0.2715
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	27753701	28460332	381	0.3192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	28462406	29381348	475	-0.2801
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	29381795	29412593	18	0.3646
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	29414583	30083685	402	0.7192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	30086526	30321358	133	0.3091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	30327770	31370243	718	0.6869
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	31372275	31555991	187	-0.2466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	31556451	45414213	7714	0.3289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	50160613	172866448	70483	-0.2871
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	172866993	172927149	58	0.2195
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	5	172927350	180293075	3814	-0.3
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	959281	52983903	31242	0.6757
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	52988715	52989194	2	-0.7954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	52989777	56052360	1978	0.7165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	56052969	80167015	10463	0.3269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	80238075	90854925	6010	-0.297
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	90855728	90856206	2	-2.2442
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	90856394	114745220	13599	-0.2988
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	114745226	114747251	2	-2.4069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	114749922	128665661	7479	-0.2963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	128666053	128666262	2	-2.5658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	128666308	166963235	24369	-0.2965
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	166964069	166967617	2	-2.4729
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	6	166967936	170745844	1163	-0.2927
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	671810	118330084	60166	0.3145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	118331297	118783730	213	0.8525
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	118784238	125733172	3775	0.3171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	125733462	125733626	2	-1.1282
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	125733723	129324449	1771	0.296
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	129325530	129473844	75	0.7651
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	7	129481974	158077879	15263	0.3004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	8	607667	1809846	558	0.0796
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	8	1810307	1811066	2	-1.7154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	8	1811556	145304484	80882	0.0623
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	779932	122091604	58309	-0.2735
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	122100143	122234957	116	0.3019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	122236298	132744041	5967	-0.2836
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	132744413	132939519	130	0.093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	132945097	134278082	828	-0.2989
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	134278599	134434917	105	0.0456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	9	134452454	140058573	2298	-0.2823
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	405240	1398581	302	0.0606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	1399973	1404085	2	-2.0523
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	1404544	1550338	112	0.0161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	1550743	1550898	2	-2.8371
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	1551211	28883652	19169	0.0467
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	28889766	29451146	437	0.4945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	29452010	98135186	37284	0.0298
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	98138547	102024360	2388	0.4374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	10	102030067	135075077	21046	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	446120	20240834	12526	-0.2722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	20240996	20242175	2	-3.7239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	20242364	45581643	16208	-0.2794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	45581719	45587258	2	-3.0421
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	45592846	47350214	764	-0.2819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	47350881	47350893	2	-2.077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	47352798	60457159	3568	-0.2816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	60459652	60567333	68	0.2751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	11	60567688	133647740	43823	-0.2737
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	760163	19779918	10765	-0.2891
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	19779992	33410717	8746	0.46
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	33410792	80017957	24549	0.1682
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	80018061	80018405	3	-0.7832
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	80020206	83433883	2015	0.314
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	83435203	83442880	3	-0.7819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	83443227	83470965	15	0.2234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	83471321	83501773	23	0.8348
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	83504142	111072328	16721	0.0799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	111078962	111134510	27	0.4177
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	12	111141265	131671419	10986	0.1284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	13	18348806	49104879	19418	-0.2823
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	13	49121521	49269427	59	0.3605
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	13	49275042	87324805	20096	-0.2761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	13	87324990	87413705	49	0.2944
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	13	87415620	114005560	16815	-0.2938
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	19571208	25378891	2637	-0.2785
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	25380069	25382609	2	-2.4151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	25387142	40655397	8722	-0.2678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	40655458	40797200	55	0.0625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	40800698	49194426	3650	-0.2688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	49197511	49708279	257	0.2665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	14	49713007	105059083	33952	-0.2842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	21238778	36946313	7419	-0.2712
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	36946367	36946513	2	-2.3319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	36946641	50315595	7332	-0.2845
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	50315702	51399469	783	0.0661
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	51399787	52786487	1043	-0.2655
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	52788206	57699184	2994	0.0613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	57700120	58827555	806	-0.2729
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	15	58830043	99701830	24059	0.1407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	16	593460	87907437	40797	0.0539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	17	933971	8317702	3465	-0.2968
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	17	8319183	8331231	10	-1.0369
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	17	8332878	32625062	10718	-0.2807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	17	32629349	78510305	22723	0.4176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	18	319586	66945396	38679	-0.2702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	18	66950026	67024340	51	0.0786
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	18	67024538	75210228	3777	-0.2838
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	19	235018	63570038	23812	-0.2862
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	403764	1290533	447	-0.2658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	1291066	1437424	113	0.062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	1437630	29307634	16202	-0.2634
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	29309942	49831408	12425	0.5945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	49834568	49902886	43	0.9975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	49920036	54246569	3091	0.629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	20	54246940	61690281	4875	0.0455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	14269492	14474864	89	0.0775
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	14490054	14667261	131	-0.8612
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	14670057	14736010	39	0.0474
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	14738075	19659733	3097	-0.7801
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	19663785	28733988	5737	0.0629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	28734218	29085868	269	-0.2847
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	29086296	35112693	3790	0.0576
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	35119810	35189960	46	0.4427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	21	35191378	46503202	7323	0.0504
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	22	15803930	47717016	16913	0.3525
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	X	3167107	63707868	24327	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	X	63713968	63714084	2	-2.3851
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E04_896472	X	63714494	154558783	39281	0.0027
