Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	3218610	15360721	6580	-0.3485
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	15362356	15362544	2	-2.1266
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	15366240	50717995	18491	-0.3285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	50719038	50719991	2	-2.0529
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	50722226	120527361	42696	-0.2606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	1	149881398	247813706	61331	0.284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	484222	50743448	30065	-0.0442
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	50744501	50744820	2	-1.6713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	50748517	51403054	136	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	51403288	51404881	2	-2.123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	51405061	65832209	7713	-0.0343
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	65838800	65877731	39	-1.4739
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	65879080	114725846	21784	-0.0453
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	114726115	114726486	2	-1.9802
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	114729099	137178771	11190	-0.0325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	137181661	141800073	2425	0.249
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	141803326	142156180	211	-0.6724
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	142157396	146061405	2324	0.2612
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	146061865	146923445	480	-0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	146923705	174737346	16406	0.254
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	174737989	174738000	2	-1.0256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	2	174739073	242476062	38462	0.2346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	2212571	20980232	11205	-0.2763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	20991432	20994001	3	-1.712
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	20997000	185683829	88655	-0.2527
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	185693439	185739384	30	-1.6026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	185740386	185828335	157	-1.0692
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	185828649	186112475	221	-1.5434
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	186115479	189090451	2059	-0.2678
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	189094308	189098727	5	-1.2836
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	3	189101901	197538677	3997	-0.2708
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	1053934	48068783	28151	0.0573
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	48068826	66040044	7718	-0.2486
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	66040446	66064852	15	0.468
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	66068368	70726399	2097	-0.2487
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	70738997	70739711	2	-2.1212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	4	70741455	188763651	64714	-0.2366
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	5	914233	25824908	14867	-0.2745
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	5	25829555	25839067	2	-1.8561
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	5	25839780	180360469	85594	-0.2604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	1014281	15751330	10393	0.2625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	15751981	15751998	2	-1.1391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	15752566	22903331	5053	0.2702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	22905317	22905832	4	-0.427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	22909333	74674332	25282	0.1478
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	74675019	74675686	4	-1.0224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	74689817	83957742	4992	0.0552
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	6	83963229	170903919	50706	-0.2954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	705284	16020299	7663	0.2258
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	16023074	16023090	3	-1.1411
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	16023130	33430008	10666	0.2468
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	33430817	33453144	18	-0.334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	33454107	69826594	17804	0.2251
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	69836148	69867791	24	-0.3431
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	69873896	78485054	3393	0.1783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	78494021	78514575	15	-0.3922
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	78516581	109950996	16266	0.2431
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	109953923	110073549	76	-0.3745
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	110078958	137973204	15164	0.2531
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	137982028	138005264	15	-0.2874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	7	138005671	158385118	10190	0.2012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	617667	738183	55	0.2555
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	738345	2113792	702	0.6841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	2707196	65487880	34284	0.2797
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	65495333	65803685	154	-0.1186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	65811821	101983194	20370	0.3009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	101988191	101992517	6	-0.5537
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	8	101993581	145232496	25952	0.2992
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	789932	11033545	6080	-0.2684
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	11034658	11035139	2	-1.8009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	11035262	13500785	719	-0.2593
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	13501319	13504924	4	-1.7061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	13506810	14103242	519	-0.2819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	14103578	14103618	2	-3.2345
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	14105813	21914588	6122	-0.2506
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	21918580	22151972	179	-1.2197
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	22155202	34917334	7307	-0.2577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	34918010	34919516	3	-1.5654
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	34919680	107054889	25964	-0.2804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	107055367	107055532	2	-1.7239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	9	107056847	140938752	21093	-0.3016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	415240	19529134	13596	-0.03
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	19530653	19531091	2	-1.5795
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	19532355	65632917	24096	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	65633789	65633900	2	-2.3534
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	65634031	73250474	4453	-0.0077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	73253323	73253988	6	-1.0733
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	73256980	89559180	9977	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	89560538	89612024	30	-1.4413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	89615137	89730647	191	-0.8478
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	89735597	120278944	19030	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	120287011	120287418	2	-2.0448
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	10	120288156	135225087	9454	-0.0182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	11	456120	106136014	58320	0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	11	106139352	126397689	13614	-0.7187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	11	126399418	126401826	3	-2.2517
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	11	126401845	132823545	4784	-0.7158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	11	133266331	134142530	471	0.0301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	889902	26009175	14758	0.2575
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	26009765	26013149	3	-1.0613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	26014375	28396951	1547	0.2766
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	28397175	28402557	2	-0.9097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	28408365	125295171	54042	0.2618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	125295730	125297424	4	-0.6778
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	12	125297632	133161346	3572	0.2426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	13	19450806	79202452	34453	0.1724
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	13	79203105	79207644	4	-1.1075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	13	79209835	114987458	22172	0.1783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	14	20501368	62333535	22897	0.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	14	62341014	105988038	26529	-0.299
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	15	23687685	101884307	44521	0.1856
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	16	653459	86255890	39223	0.0963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	16	86257108	86257213	2	-1.0474
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	16	86260764	89379936	1562	0.0722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	17	987221	80917016	36986	0.1923
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	18	329586	51964538	28839	0.0626
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	18	51971393	51988668	18	-0.6991
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	18	51990133	77109240	13785	0.0666
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	19	284018	24017835	8941	0.104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	19	24018382	24018766	2	1.5497
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	19	24019241	58878226	15003	0.1323
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	20	455764	62219837	37278	0.2417
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	21	15347621	16948663	1100	-0.2762
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	21	17154602	17228150	46	-1.2498
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	21	17233883	44313979	18064	-0.2979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	21	44315314	44320989	8	-3.7149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	21	44321919	47678774	1352	-0.3638
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	22	17423930	49331012	16923	0.5679
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	3157107	27642276	10713	0.4335
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	27642311	27676641	26	-1.5244
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	27677458	34033669	3054	0.4536
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	34034134	36155224	846	-0.1104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	36158296	36177024	15	-1.2186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	36177259	36177606	4	-3.7443
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	36177670	37773192	708	-0.109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	37773322	37776707	3	-3.7132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	37776940	50513027	5732	-0.148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	50515693	50517301	2	-5.5934
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	50517547	69504669	5487	-0.0825
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	69504764	69504787	2	-4.0665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	69506519	91434861	8319	-0.0542
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	91438750	91449477	13	-1.4823
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	91449778	105278361	5969	-0.1052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	105278409	105279056	3	-3.8819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	105282152	110297200	2264	-0.0993
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	110297273	110297310	2	-4.9567
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	110297826	110361496	45	-0.3452
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	110361509	110361790	2	-5.9931
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	110366760	149660406	18441	-0.1145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	149663568	149664405	2	-5.1018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E05_896636	X	149664755	154905589	1598	-0.1493
