Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	3208470	81976150	44752	0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	81976182	81976559	2	-1.5402
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	81977024	112456453	18124	0.0228
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	112457118	112460047	5	1.1187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	112460313	116892253	2813	0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	116895745	116898227	2	-1.5289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	1	116913483	245880329	63364	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	474222	5505492	2638	0.019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	5506070	5506204	2	-1.3949
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	5512374	35166410	18269	-0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	35173393	35311205	80	0.468
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	35311767	73993277	21985	0.0205
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	73993504	73993518	2	-1.2755
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	2	73996236	242124735	88284	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	3	526235	199023074	106367	0.017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	4	1043934	80970673	43842	0.01
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	4	80970760	80976072	5	-1.0794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	4	80977938	137693505	30943	-0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	4	137699943	137891480	114	-0.7975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	4	137899114	189836143	27796	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	5	967233	4724383	2403	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	5	4724474	4724598	2	-1.1052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	5	4725255	180293075	98074	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	6	959281	170745844	96449	0.0192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	7	671810	48487178	27885	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	7	48488066	48491576	3	-1.0523
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	7	48494422	158077879	53406	0.0456
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	8	607667	75514986	40915	0.0049
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	8	75526347	75531677	2	-1.348
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	8	75532100	145304484	40597	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	9	779932	106543190	47223	-0.026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	9	106545508	107031962	429	-0.8073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	9	107031965	107033986	15	-0.1232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	9	107036364	107239010	135	-0.7752
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	9	107255245	140058573	20199	-0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	10	405240	84055705	48646	-0.0148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	10	84056540	84058947	2	-1.8932
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	10	84063139	135075077	32199	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	11	446120	40393786	25228	0.017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	11	40396230	40396962	2	-1.1953
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	11	40404103	133647740	52014	-0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	12	760163	38840283	20285	-0.0209
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	12	38840299	38840926	3	-1.2792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	12	38840965	131671419	53649	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	13	18348806	67169039	27545	-0.0344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	13	67173994	67177516	2	-1.5744
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	13	67178518	114005560	29087	-0.0162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	14	19571208	105059083	49434	-0.0233
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	15	21238778	45551018	11946	-0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	15	45551678	45551693	2	-1.3518
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	15	45553262	99701830	32572	-0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	16	593460	86226908	40483	-0.0108
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	16	86227543	86610624	199	0.4334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	16	86617076	87907437	172	-0.0702
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	933971	5632700	2055	-0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	5633675	5639211	6	-0.6792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	5639927	21045219	7500	-0.0282
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	21049743	21051024	3	-0.9452
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	21053497	64954190	20777	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	64954463	64954525	2	-1.3593
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	17	64969657	78510305	6636	0.0159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	18	319586	75210228	42648	-0.0119
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	19	235018	8834217	2688	-0.0214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	19	8840684	8866875	28	-0.7179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	19	8868525	63570038	21228	-0.0165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	20	403764	61690281	37276	0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	21	14269492	46503202	20580	-0.0287
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	22	15803930	16504182	413	0.2609
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	22	16508960	31329164	6098	0.0133
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	22	31336967	31616365	252	0.2459
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	22	31617027	47717016	10159	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	X	3167107	48352130	20334	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	X	48354411	48354614	2	-5.0372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_E09_896576	X	48355677	154558783	43371	0.0016
