Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	3208470	11514391	4670	-0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	11521257	11522361	2	-1.4401
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	11522648	245880329	124319	0.0138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	474222	71036221	41504	0.0173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	71036408	71043559	2	-1.3917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	71044053	102381396	12207	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	102382036	102382350	2	-1.6124
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	102382574	107992391	3498	0.0166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	107995591	108138999	96	0.6398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	108143903	139754678	15064	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	139760737	139761349	2	-1.1892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	139767163	140397744	332	-0.0615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140399116	140400181	3	-0.8667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140410435	202770348	34853	0.0176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	202772093	203793880	339	0.3975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	203793913	212867198	5521	0.0287
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	212907231	212918454	9	-0.5018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	212924676	216133440	1898	0.036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	216137048	216139060	3	-2.0392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	216139311	230658144	9187	0.0178
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	230662865	230663505	2	-1.7613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	230666364	242124735	6684	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	526235	4984548	1639	0.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	4987820	5029180	27	0.4192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	5134041	199023074	104652	0.0234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	1043934	1774074	233	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	1786488	1970056	69	0.3839
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	1977314	5209585	1572	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	5210153	5210555	2	-1.2069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	5211672	92494780	48761	0.0317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	92501920	92502794	2	-1.8329
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	92505247	169996297	42431	0.0425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	169996321	170113948	76	0.4645
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	170117820	172980554	1584	0.0407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	172982729	189836143	7945	-0.5182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	967233	36823635	21251	0.0257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	36823852	36828385	4	-1.3027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	36828572	73197022	17340	0.0249
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	73197110	73197314	2	-1.9553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	73198331	89931059	9374	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	89932639	90080294	96	0.4844
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	90086240	180293075	52380	0.0269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	959281	48791495	28723	0.4004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	48794801	67211139	7552	0.0356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	67216140	137618283	40452	-0.5185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	137619861	147488873	5708	0.0244
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	147489361	147612416	74	0.4199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	147621592	155581922	5555	0.0355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	155582838	155583578	2	-1.0895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	155584294	170745844	8304	0.0252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	671810	14693652	6814	0.0171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	14697226	14697348	3	-1.1928
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	14700020	34453093	12235	0.0262
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	34453287	34453439	3	1.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	34469187	77632407	19966	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	77640181	77735920	88	-0.5721
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	77736138	158077879	42167	0.0267
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	607667	63086862	33568	0.0173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63087273	63169059	47	0.4804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63169894	63884086	465	0.0454
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63884218	63910167	27	0.3115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63911189	109341355	25534	0.029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	109347891	109351625	3	-1
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	109358450	145304484	21829	0.0239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	779932	15986647	8752	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	15990812	20635932	3811	-0.5268
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	20637169	20637373	2	-2.6478
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	20638623	21966870	908	-0.5181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	21967194	92232614	25203	0.0169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	92232882	92232903	2	-1.3602
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	92233855	99898178	4578	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	99901167	99922702	18	-1.2539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	99924385	140058573	24704	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	405240	16789685	11835	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	16789922	16895799	87	0.4105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	16898562	59275645	21756	0.0196
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	59275698	75236835	9576	-0.5389
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	75242888	99065616	14736	0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	99068567	99217332	75	0.3929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	99219615	113068792	8289	0.0157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	113072954	113150383	64	0.4562
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	113156486	120573479	5141	0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	120575105	120577702	3	-0.9963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	120578252	135075077	9253	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	446120	8846872	4499	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	8847500	8929221	60	0.3621
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	8930933	33253772	16356	0.0223
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	33255645	33557157	76	0.3656
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	33559422	43886319	6569	0.0245
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	43890697	44091476	179	0.3803
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	44097759	77654527	13127	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	77655497	77908283	142	0.4001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	77916391	103364855	15997	0.0257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	103365328	125497749	14647	-0.5449
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	125497770	125504415	2	-2.667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	125504741	128729537	2506	-0.5462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	128729765	133647740	3024	0.0206
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	760163	112487610	63815	0.0177
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	112487688	112489525	3	-1.1711
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	112490215	131671419	10097	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	13	18348806	114005560	56616	0.0267
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	19571208	89139515	39928	0.0182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	89142239	89247269	64	0.3455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	89248135	105059083	9424	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	21238778	95953225	42430	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	95953362	96006978	30	0.3895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	96010668	99701830	2046	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	593460	6183930	2454	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	6187403	6219095	27	0.4372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	6365753	12633787	4195	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	12635395	12636088	3	-1.1793
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	12636198	31757800	7198	-0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	45065166	56479344	7482	-0.5392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	56481901	56483672	2	-2.5842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	56483918	87907437	19433	-0.5481
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	933971	22294644	9636	-0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	22294927	24284924	885	-0.5204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	24285293	24287229	2	-1.7739
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	24287665	25172243	399	-0.5598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	25175489	43961662	7855	-0.0186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	43961733	44611731	286	0.3783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	44612121	56413018	6776	0.6672
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	56413367	59760871	1618	0.8931
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	59760976	72594399	7136	0.6705
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	72596978	72597249	3	-0.4828
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	72599316	78510305	2374	0.6604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	319586	9273948	4990	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	9275824	9276021	3	-0.8811
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	9277340	12241627	2047	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	12246238	12284410	27	-0.6618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	12289497	57240352	26265	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	57245370	57245378	2	-1.2742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	57245967	58910463	1004	0.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	58916228	59021369	137	0.4111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	59024564	75210228	8164	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	19	235018	63570038	23940	-0.0425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	403764	36635800	20545	0.3502
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	36636376	36765895	76	0.6273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	36766200	61690281	16653	0.3426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	14269492	19312266	3129	0.0194
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	19316549	19316625	2	-1.0794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	19317615	43713094	16233	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	43713720	46503202	1203	-0.5971
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	22	15803930	47717016	16911	-0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	3167107	34855068	13939	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	34857872	34859633	5	-1.8132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	34861398	40450201	2879	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	40450393	40450788	2	-3.5356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	40456357	129376110	35750	0.0112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	129379652	129379685	2	-3.1998
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	129380590	154558783	10964	0.0089
