Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	3218610	11591804	4670	-0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	11598670	11599774	2	-1.4401
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	1	11600061	247813706	124375	0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	484222	71182713	41497	0.0173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	71182900	71190051	2	-1.3917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	71190545	103014964	12206	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	103015604	103015918	2	-1.6124
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	103016142	108625959	3498	0.0166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	108629159	108772567	96	0.6398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	108777471	140038208	15062	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140044267	140044879	2	-1.1892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140050693	140681274	331	-0.0616
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140682646	140683711	3	-0.8667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	140693965	203062103	34856	0.0175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	203063848	204085635	339	0.3975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	204085668	213158953	5521	0.0287
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	213198986	213210209	9	-0.5018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	213216431	216425195	1897	0.0359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	216428803	216430815	3	-2.0392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	216431066	230949900	9188	0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	230954621	230955261	2	-1.7613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	2	230958847	242476062	6684	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	2212571	5009548	1638	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	5012820	5054180	27	0.4192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	3	5159041	197538677	104647	0.0234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	1053934	1804276	233	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	1816690	2000258	69	0.3839
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	2007516	5158684	1572	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	5159252	5159654	2	-1.2069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	5160771	92275757	48759	0.0317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	92282897	92283771	2	-1.8329
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	92286224	169759722	42439	0.0425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	169759746	169877373	76	0.4645
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	169881245	172743979	1584	0.0407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	4	172746154	188763651	7944	-0.5182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	914233	36787878	21253	0.0257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	36788095	36792628	4	-1.3027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	36792815	73161266	17339	0.0249
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	73161354	73161558	2	-1.9553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	73162575	89895303	9374	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	89896883	90044538	96	0.4844
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	5	90050484	180360469	52379	0.0269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	1014281	48683536	28723	0.4004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	48686842	67154418	7555	0.0355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	67159419	137576590	40456	-0.5185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	137578168	147447180	5710	0.0245
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	147447668	147570723	74	0.4199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	147579899	155540230	5555	0.0355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	155541146	155541886	2	-1.0895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	6	155542602	170903919	8304	0.0252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	705284	14727127	6816	0.0171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	14730701	14730823	3	-1.1928
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	14733495	34486568	12233	0.0262
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	34486762	34486914	3	1.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	34502662	77794471	19965	0.0221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	77802245	77897984	88	-0.5721
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	7	77898202	158385118	42169	0.0267
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	617667	62924308	33570	0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	62924719	63006505	47	0.4804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63007340	63721532	465	0.0454
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63721664	63747613	27	0.3115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	63748635	109272179	25537	0.029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	109278715	109282449	3	-1
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	8	109289274	145232496	21831	0.0239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	789932	15996647	8753	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	16000812	20645932	3812	-0.5268
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	20647169	20647373	2	-2.6478
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	20648623	21976870	908	-0.5181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	21977194	93192794	25208	0.0169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	93193062	93193083	2	-1.3602
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	93194035	100858357	4579	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	100861346	100882881	18	-1.2539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	9	100884564	140938752	24708	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	415240	16749679	11835	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	16749916	16855793	87	0.4105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	16858556	59605639	21757	0.0197
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	59605692	75566829	9574	-0.5389
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	75572882	99075626	14735	0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	99078577	99227342	75	0.3929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	99229625	113078802	8289	0.0157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	113082964	113160393	64	0.4562
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	113166496	120583489	5141	0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	120585115	120587712	3	-0.9963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	10	120588262	135225087	9253	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	456120	8890296	4498	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	8890924	8972645	60	0.3621
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	8974357	33297196	16354	0.0223
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	33299069	33600581	76	0.3656
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	33602846	43929743	6568	0.0245
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	43934121	44134900	179	0.3803
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	44141183	77976879	13128	-0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	77977849	78230635	142	0.4001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	78238743	103859645	15992	0.0257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	103860118	125992539	14645	-0.5449
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	125992560	125999205	2	-2.667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	125999531	129224327	2506	-0.5462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	11	129224555	134142530	3024	0.0206
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	889902	61933106	31977	0.0144
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	61936838	61937084	2	-1.1482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	61939908	114003227	31832	0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	114003305	114005142	3	-1.1711
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	12	114005832	133161346	10096	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	13	19450806	54401853	21075	0.0161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	13	54404935	54404955	2	-1.1333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	13	54412722	114987458	35535	0.0331
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	20501368	90069762	39926	0.0182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	90072486	90177516	64	0.3455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	14	90178382	105988038	9424	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	23687685	98152221	42429	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	98152358	98205974	30	0.3895
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	15	98209664	101884307	2045	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	653459	6243929	2454	-0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	6247402	6279094	27	0.4372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	6425752	12726286	4195	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	12727894	12728587	3	-1.1793
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	12728697	31850299	7198	-0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	46507665	57921843	7482	-0.5392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	57924400	57926171	2	-2.5842
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	16	57926417	89379936	19367	-0.5484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	987221	25270517	9636	-0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	25270800	27260798	885	-0.5204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	27261167	27263103	2	-1.7739
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	27263539	28148117	399	-0.5598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	28151363	46606663	7855	-0.0186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	46606734	47256732	286	0.3783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	47257122	59058236	6776	0.6671
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	59058585	62407139	1618	0.8931
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	62407244	75082804	7136	0.6705
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	75085383	75085654	3	-0.4828
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	17	75087721	80917016	2374	0.6604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	329586	9283948	4992	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	9285824	9286021	3	-0.8811
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	9287340	12251627	2047	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	12256238	12294410	27	-0.6618
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	12299497	59089372	26262	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	59094390	59094398	2	-1.2742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	59094987	60759483	1004	0.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	60765248	60870389	137	0.4111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	18	60873584	77109240	8162	0.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	19	284018	58878226	23940	-0.0425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	455764	37202386	20548	0.3502
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	37202962	37332481	76	0.6273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	20	37332786	62219837	16653	0.3426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	15347621	20390395	3129	0.0194
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	20394678	20394754	2	-1.0794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	20395744	44888666	16233	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	21	44889292	47678774	1202	-0.5971
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	22	17423930	49331012	16910	-0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	3157107	34945147	13939	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	34947951	34949712	5	-1.8132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	34951477	40565257	2879	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	40565449	40565844	2	-3.5356
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	40571413	129548429	35770	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	129551971	129552004	2	-3.1998
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F02_896562	X	129552909	154905589	10961	0.0088
