Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	51598	88451	16	-0.7214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	88465	394034	14	0.1386
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	524414	708526	7	-0.451
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	713180	1500664	189	0.075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	1617778	1653256	13	0.6921
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	1653691	16724101	8492	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	16741950	16843043	43	-0.3
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	16878321	16890117	22	0.0747
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	16890217	16987299	36	-0.3711
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	17049632	19114491	1530	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	19114930	19116272	2	-2.1427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	19116608	25455928	3805	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	25465715	25519573	28	-1.4537
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	25534088	72541086	28785	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	72541504	72583721	45	-0.9433
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	72583736	74072593	906	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74072604	74085015	5	-1.2118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74086614	105820728	20139	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	105820759	105823898	16	0.8286
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	105825578	108702894	2017	0.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	108711540	108787720	13	-0.7532
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	108815431	110023250	626	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	110025907	110027901	8	1.1994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	110028010	110029038	7	0.2355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	110034497	110044476	18	1.9339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	110046521	147137024	8352	0.0159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	147137561	147496432	125	-0.4656
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	147496467	150822151	1549	0.0259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	150822330	150846073	25	-0.6117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	150846092	195068428	29863	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	195068473	195101729	19	-0.5908
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	195102121	195110790	15	-1.254
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	195110815	195168376	36	-0.7855
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	195171782	247191011	35905	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	2784	4183562	2988	0.0161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	4191739	4201600	40	-0.455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	4201708	34544573	21087	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	34552819	34590667	47	0.6246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	34591060	52597429	13049	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	52607972	52608385	7	0.8017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	52612257	52635046	33	0.3366
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	52641453	86791198	21951	0.01
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	86806581	86807365	2	-1.5686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	86823917	106246527	7733	0.0082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	106247145	106251789	11	0.5888
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	106253687	180126735	44504	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	180127168	180130114	22	-0.7525
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	180130133	242738129	38606	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	35345	6621543	5848	0.0137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	6626128	6630078	24	-0.4524
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	6630248	26982235	14515	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	26983524	26988971	4	-1.1849
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	26995358	68828854	27484	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	68828949	68830103	14	-1.3159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	68831448	131246388	34755	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	131249276	131289688	53	0.6026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	131290966	147124612	9897	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	147124624	147126856	5	-0.9562
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	147126877	164015644	10403	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	164017424	164023184	6	1.6577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	164028410	199380515	21974	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	2281	9819488	5803	-0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	9832514	9840596	28	-1.69
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	9843312	9999813	178	-0.0252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	10001452	10009766	16	0.4833
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	10011816	25165270	11026	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	25165678	25187367	19	0.5051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	25194481	68937665	25277	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	68939354	68967186	6	0.6594
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	68970733	68970737	3	-1.7569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	68977394	69408681	88	-0.1938
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	69475459	69512426	4	0.7955
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	69571393	69707310	57	0.0482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	69713484	69741901	18	-1.301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	69743307	172605921	62422	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	172611459	172614351	12	1.11
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	172616946	173224503	396	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	173225723	173226108	12	-1.52
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	173232554	191261904	12128	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	68532	8755240	6967	0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	8755522	8800142	46	-0.8281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	8802731	57357403	28895	0.0078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	57361784	57369290	32	1.6081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	57374114	68882059	7305	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	68903050	69110733	2	1.8039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	69110747	177131055	67901	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	177160157	177165211	3	2.5096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	177187571	177318919	21	0.271
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	177322681	177332854	7	-0.9082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	177332889	180311316	1786	0.0216
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	180311494	180350709	18	0.6651
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	180365831	180722926	171	0.0293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	94661	26847004	20288	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	26850078	26862372	7	0.9692
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	26863894	29944218	1442	-0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	29944454	29989326	34	0.3952
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	30003952	32689867	1223	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	32690181	32710085	10	-0.8031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	32710247	54039110	13763	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54039189	54039814	6	1.397
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54043307	54802799	499	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54802833	54803101	2	-1.9545
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54807711	79019593	12802	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	79019608	79091893	112	0.3763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	79091904	81341690	1437	0.0134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	81341743	81342226	11	-0.9388
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	81342243	81344849	6	-0.2874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	81344872	81346253	8	-0.8769
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	81351060	103844881	14028	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	103844917	103872363	44	0.7128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	103872404	170892930	44246	0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	52911	9141296	5428	0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	9144901	9145148	4	-1.3809
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	9145814	11886875	2163	0.0138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	11887398	11887944	5	-1.0672
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	11890777	22401305	8506	0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	22401997	22403012	2	-2.1733
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	22405279	38261521	11337	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	38264360	38364572	124	0.3221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	38367482	54353999	11012	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	54354003	54354011	5	-1.8303
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	54360982	57011783	1632	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	57069302	57146108	9	0.6639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	57158366	57538469	267	0.072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	57540053	57540580	3	-1.6571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	57540651	109221034	26895	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	109224328	109241146	35	0.503
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	109241218	125832159	10038	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	125832210	125834113	15	0.6252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	125834114	133435735	4705	0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	133435751	133456784	36	0.5659
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	133459332	136098376	1843	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	136103776	136107678	5	-1.2931
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	136108690	141409593	3349	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	141416112	141445586	46	-0.346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	141445629	142154515	447	0.0903
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	142156294	142165614	27	0.8863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	142165684	143540378	844	0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	143542557	143697880	39	0.3752
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	143705862	149476921	3613	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	149478220	149478673	2	-3.0382
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	149482501	152778571	1967	0.0152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	152778578	152778645	2	-2.5927
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	152778648	154020828	864	0.0162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	154024104	154030546	4	-1.8446
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	154031763	158819765	3247	0.0117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	21254	583041	327	0.0373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	584944	585908	10	0.9428
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	591043	2861760	1963	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	2877299	2878170	3	-1.7146
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	2883931	12276787	9018	0.0213
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	12278011	12286526	19	0.4372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	12286886	18309434	5416	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	18310437	18315465	4	-1.7426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	18315667	23458253	3945	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	23463685	23463816	5	-1.2442
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	23463850	25030393	1142	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	25030439	25040250	25	0.6799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	25047021	39349816	9035	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	39354760	39506122	58	-1.9598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	39507456	146268959	65011	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	36587	23351805	20460	0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	23353115	23363484	8	0.8765
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	23368488	43177963	10916	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	43255666	43697342	35	-0.4476
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	43707554	67673801	245	0.0346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	67675871	67675879	5	1.6599
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	67678160	140211215	48266	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	62759	18161039	14899	0.0095
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	18168253	18176754	2	1.5406
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	18190767	24417680	4350	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	24417681	24417924	7	-1.3553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	24417926	56115622	17962	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	56122955	56138443	13	0.7786
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	56142270	135356694	53883	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	188510	4195630	1792	0.0185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	4206589	4257952	18	-0.6542
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	4257967	4924693	670	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	4925086	4932281	28	0.7722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	4932833	5751268	811	-0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	5751284	5768936	23	0.6336
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	5772762	18909138	9446	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	18909166	18927324	42	-0.3073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	18927751	42769727	17204	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	42773062	42774615	2	-2.5404
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	42777179	134449982	57146	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	20703	1404810	811	0.0311
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	1409531	1411821	2	1.3036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	1413136	4430289	2257	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4433414	4434071	3	-1.2879
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4434453	11105412	4199	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	11106639	11143141	16	0.676
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	11148096	36273993	16469	0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	36298834	36300285	2	-1.7444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	36320625	44190705	4780	0.0181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	44192107	44195804	3	-1.6269
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	44199559	132288262	56564	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	17924949	37950811	14290	0.0082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	37955572	37956056	2	-1.5532
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	37963057	57944767	12549	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	57945533	57950521	5	-0.9867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	57951142	71374989	8322	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	71375556	71378557	4	-2.6444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	71378606	114126499	29156	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	18072124	18690051	46	0.0953
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	18730853	19494766	145	0.7141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	19495349	21448637	1323	0.0156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	21448675	22057862	570	0.248
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	22058411	105609107	53088	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	105612798	105632486	12	-2.0349
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	105638145	106245617	341	0.0854
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	106247258	106249648	6	-1.314
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	106250541	106356482	71	0.0426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	18276341	18463975	47	-0.0433
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	18466953	20224763	375	0.4082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	20232440	28157323	4678	0.0272
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	28173703	28579861	105	-0.4255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	28583081	42980909	8925	0.0101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	42990690	43022374	15	-0.7658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	43026036	72550934	19325	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	72551779	72553935	2	-1.6102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	72555154	74678296	893	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	74678566	74689234	22	0.7634
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	74689249	100286563	17693	0.0114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	777	19853151	13535	0.0174
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	19853309	19878319	31	0.3599
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	19878366	68736897	22560	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	68737070	68744695	7	0.7609
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	68755268	76929109	5730	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	76929941	76942266	16	0.9591
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	76942502	82446324	6241	0.0118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	82447181	82448961	2	-1.8486
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	82449158	88815036	4401	0.0168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	526	16595026	10509	0.0155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	16598056	16682253	15	0.5851
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	16682509	18219553	889	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	18223274	18224238	11	0.3915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	18224264	18260587	19	-0.0441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	18296117	18353283	18	-1.5175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	18367186	18405311	10	-0.6116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	18405946	41518916	12044	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	41521621	41719947	125	0.2817
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	41750187	42107462	47	-0.4045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	42107479	49072905	4076	0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	49081991	49082180	2	-2.477
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	49083543	74878384	15905	0.009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	74879748	74900696	17	0.5855
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	74912218	76497435	809	0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	76500285	76501377	5	-0.8316
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	76504724	78643088	804	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	1543	56624390	36691	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	56624783	56630254	10	-0.8969
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	56636873	73820360	12771	0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	73820418	73823229	2	-1.7784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	73825713	76116029	1352	0.0245
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	41910	24018239	11104	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24022207	24027043	6	-1.2878
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24028354	24167289	102	0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24170942	24194082	10	-0.8451
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24211215	24252658	16	0.2692
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24253260	24256797	9	-0.7912
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	24279522	40541333	5580	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	40547193	40553619	20	-0.4305
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	40553688	49597745	4697	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	49598364	49598387	2	-1.5241
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	49598459	58222557	4384	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58223147	58239173	12	0.5987
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58244041	58559112	239	0.0243
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58563202	58621576	51	-0.9486
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58622129	63789666	3126	0.0249
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	9305	9548	8	0.3591
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	9582	1508543	1192	0.0339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	1508562	1508999	6	0.6875
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	1509580	1541849	40	2.303
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	1541893	14749493	9955	0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	14749725	14749913	3	-1.5164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	14754715	62386512	31295	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	62425139	62426597	5	-0.5519
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	21	9758742	46921385	24416	0.0119
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	14432528	17006129	1191	0.0082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	17006234	17009153	7	-1.0652
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	17010060	21082462	2450	0.0529
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	21082680	21082880	4	1.0869
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	21087321	22660218	964	0.0501
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	22660269	22661967	2	-2.2243
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	22662625	41222540	12815	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	41227226	41280435	25	0.4507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	41285375	49581321	6107	0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	108477	146075843	79514	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146077991	146083562	5	-3.5648
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146086598	154835548	5034	0.0222
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	Y	2710438	57427647	8590	-0.928
