Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	3208470	74072593	40159	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74072604	74085015	5	-1.2118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74086614	185023295	50409	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	185024114	185024853	2	-1.5545
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	185028220	245880329	38493	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	474222	242124735	131252	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	526235	199023074	106368	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	1043934	189836143	102706	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	967233	180293075	100482	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	959281	54802799	32477	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54802833	54803101	2	-1.9545
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54807711	170745844	63966	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	671810	158077879	81296	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	607667	145304484	81514	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	779932	140058573	68001	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	405240	135075077	80852	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	446120	133647740	77249	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	760163	4430289	1986	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4433414	4434071	3	-1.2879
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4434453	131671419	71948	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	18348806	57944767	22982	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	57945533	57950521	5	-0.9867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	57951142	114005560	33647	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	19571208	105059083	49434	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	21238778	72550934	29105	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	72551779	72553935	2	-1.6102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	72555154	99701830	15416	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	593460	87907437	40854	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	933971	76497435	36340	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	76500285	76501377	5	-0.8316
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	76504724	78510305	633	-0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	319586	73820360	41907	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	73820418	73823229	2	-1.7784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	73825713	75210228	741	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	235018	58559112	21783	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58563202	58588445	22	-0.9484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	58714221	62499788	1617	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	62507569	62508355	2	-1.4159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	62508985	63570038	521	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	403764	61690281	37276	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	21	14269492	46503202	20582	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	15803930	47717016	16923	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	3167107	40617957	16959	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	40626643	40626695	2	-2.1725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	40626768	93038804	18777	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	93039374	93039809	3	-2.0881
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	93043982	146075843	24651	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146077991	146083562	5	-3.5648
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146086598	154558783	3312	0.0114
