Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	3218610	74300005	40221	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74300016	74312427	5	-1.2118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	1	74314026	247813706	88897	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	2	484222	242476062	131244	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	3	2212571	197538677	106362	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	4	1053934	188763651	102711	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	5	914233	180360469	100482	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	1014281	54694840	32479	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54694874	54695142	2	-1.9545
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	6	54699752	170903919	63973	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	7	705284	158385118	81297	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	8	617667	145232496	81521	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	9	789932	140938752	68013	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	10	415240	135225087	80850	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	11	456120	134142530	77239	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	889902	4560028	1986	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4563153	4563810	3	-1.2879
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	12	4564192	133161346	71943	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	19450806	59046766	22980	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	59047532	59052520	5	-0.9867
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	13	59053141	114987458	33645	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	14	20501368	105988038	49432	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	23687685	74763881	29104	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	74764726	74766882	2	-1.6102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	15	74768101	101884307	15415	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	16	653459	89379936	40789	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	987221	78882840	36340	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	78885690	78886782	5	-0.8316
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	17	78890129	80917016	633	-0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	329586	75691372	41904	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	75691430	75694241	2	-1.7784
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	18	75696725	77109240	741	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	284018	53867300	21783	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	53871390	53896633	22	-0.9484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	54022409	57807976	1617	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	57815757	57816543	2	-1.4159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	19	57817173	58878226	521	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	20	455764	62219837	37279	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	21	15347621	47678774	20581	0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	22	17423930	49331012	16922	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	3157107	40733013	16959	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	40741699	40741751	2	-2.1725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	40741824	93152148	18787	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	93152718	93153153	3	-2.0881
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	93157326	146268151	24660	0.0097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146270299	146275870	5	-3.5648
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F07_896474	X	146278906	154905589	3310	0.0111
