Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	61735	1628826	229	-0.0287
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	1642103	1672603	14	0.4598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	1687587	17045761	8562	-0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	17048196	17114712	23	0.306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	17177045	72750353	34213	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	72756113	72763370	9	-0.8974
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	72768418	72810938	45	0.4993
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	72811076	106013376	21040	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	106019205	106022375	17	0.6792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	106024055	108729759	1943	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	108734235	108737496	3	-0.8985
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	108739104	110227515	725	0.01
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	110232974	110240178	17	-0.4556
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	110242953	112690326	1958	0.0125
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	112695965	112697390	25	0.4224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	112705956	152555527	8040	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	152555706	152586238	31	1.4104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	152586278	196741367	29781	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	196744136	196823317	82	0.2396
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	196823613	209758627	8525	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	209759971	209760719	2	-1.1699
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	209762875	210071062	297	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	210081613	210083984	3	1.4475
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	210086552	214637808	3099	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	214638436	214638457	2	-1.0749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	214639253	216624888	1353	-0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	216635214	216651859	21	-1.0582
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	216654423	217166744	456	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	217166839	217166976	2	-1.1489
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	217167592	227774905	6979	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	227777149	227778022	2	-1.3094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	227778511	240391247	9283	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	240391740	240394139	7	0.6404
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	240396105	248600297	5712	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	248600796	248641192	16	0.457
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	248649486	248737447	24	0.0416
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	248749194	248795289	30	-0.8359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	248795852	249224388	148	0.0202
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	12784	5301583	3819	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	5303867	5304015	2	1.2329
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	5306069	34520473	20192	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	34523978	34525580	2	1.0426
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	34525967	34699315	96	-0.0276
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	34701394	34737163	46	-2.0929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	34737556	49522898	10763	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	49533042	49541190	6	-0.9695
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	49545041	50976171	1067	-0.01
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	50976459	50976852	5	-0.7334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	50977979	52754881	1215	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	52758753	52781542	33	0.428
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	52787949	180413371	74183	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	180418211	180422137	30	-0.6929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	180425643	208354955	16451	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	208355178	208359336	16	-0.9429
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	208359476	213369618	3193	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	213370362	213370702	2	-2.8658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	213372988	243089456	18945	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	60345	224602	156	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	230022	232800	4	-0.7759
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	234877	776321	455	-0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	776632	776636	2	-1.1364
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	777652	1781803	936	0.0171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	1782524	1785876	5	-1.1423
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	1789158	12144982	8545	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	12145349	12145362	2	-1.2034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	12147150	15500933	2361	-0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	15501686	15502130	3	-0.9699
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	15504738	16240556	482	-0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	16240629	16241179	5	-2.7874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	16241325	95456106	49028	0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	95466880	95468110	2	-2.6686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	95468680	129780876	20648	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	129785940	129806236	47	0.5728
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	129806924	148962976	11922	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	148963395	148968121	25	-0.8396
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	148971080	162512739	8348	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162513092	162524858	10	0.9067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162528630	162540490	10	-0.5117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162545716	162615915	42	0.639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162623842	162714517	78	-0.0229
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162717727	162719562	2	-2.665
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	162726159	166512579	2165	0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	166515024	166530943	8	0.5622
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	166534431	168730180	1199	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	168733402	168738628	2	-1.9003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	168739827	175080611	4217	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	175080747	175081325	5	-0.9863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	175086788	192877962	11530	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	192878045	192879006	5	0.747
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	192880473	194641316	1175	-0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	194641346	194641845	4	-0.868
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	194642480	197838578	1520	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	197845216	197896118	20	-0.5299
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	12281	4166518	1716	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	4166983	4166997	2	-1.5915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	4167133	10210390	4087	-0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10214160	10230797	23	1.3229
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10230812	10231498	6	0.888
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10234214	10235268	7	0.5753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10236142	10390715	171	-0.0218
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10392354	10400668	16	-2.1328
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	10402718	34779054	16813	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	34786500	34788021	6	-0.5323
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	34790516	34818770	27	-0.2112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	34819110	34824725	5	-0.7385
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	34829872	64693940	16586	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	64697469	64708258	29	-0.3286
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	64716431	69372003	2884	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	69374941	69489335	66	-0.3339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	69505115	70127644	328	0.035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70127652	70231799	53	-0.7519
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70232022	70290401	32	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70294140	70294605	2	1.0436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70297765	70389716	78	-0.0139
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70389861	70390779	2	0.9812
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	70391888	76032656	3354	0.0077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	76033786	76034046	3	-0.9346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	76034791	90428170	9132	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	90428199	90428494	3	-1.1489
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	90429792	92512621	1261	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	92513271	92515703	2	-1.6636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	92519064	109385588	9891	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	109387806	109388635	2	-2.8485
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	109404097	138092420	16882	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	138092516	138094972	15	-0.6682
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	138095121	149097869	6865	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	149098936	149100933	4	-1.1275
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	149102933	161874000	7901	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	161880018	161884919	22	-0.6365
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	161884958	172369346	6677	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	172374884	172377776	12	-1.2505
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	172380371	172987928	397	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	172989148	172989533	12	-1.8162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	172995979	176896162	2219	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	176899025	176899063	2	-1.1319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	176901089	179391442	1673	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	179392345	179392363	3	-1.2742
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	179396006	191027923	8229	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	15532	685748	307	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	698371	779860	30	-1.0961
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	779881	801571	7	-0.1325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	801765	809806	6	-0.6548
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	817850	5375582	3791	-0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	5376362	5377634	5	-1.1937
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	5378823	7169476	1602	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	7177338	7189925	26	-0.8677
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	7202635	7243477	34	0.0419
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	7248472	7255921	6	-0.9375
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	7255984	8766520	1217	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	8767977	8768044	2	-1.3273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	8768529	11161625	2101	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	11162636	11162771	3	-0.8604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	11167277	12815780	1089	-0.0144
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	12815865	12838533	13	0.8113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	12849201	14995596	1558	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	14996395	15000268	3	0.8015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	15002489	15718492	415	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	15719222	15720597	11	-0.7485
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	15723346	25046707	5654	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	25053420	25053641	3	-0.9319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	25054004	25976262	563	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	25979436	25981732	2	-1.1756
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	25982060	27524452	893	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	27525390	27525970	8	-0.6458
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	27525987	46191884	11448	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	46195883	46199435	4	-0.9531
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	46209299	46251306	13	0.0163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	46271008	46273502	8	0.9061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	46278212	57321646	5081	0.0113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	57326027	57333515	31	1.3732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	57333533	74181209	9684	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74183863	74186073	3	-1.184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74192125	96911070	13176	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	96911529	96916683	2	-1.0669
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	96917834	103851221	4012	0.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	103860373	103860604	4	-1.1879
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	103861049	117388422	9408	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	117388610	117404340	11	-0.6816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	117406805	151514171	21391	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	151515386	151520422	16	-0.5583
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	151520497	155475105	2659	-0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	155476772	155482729	14	-0.6584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	155495250	175460087	14099	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	175465689	175469507	2	1.2354
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	175470324	177198449	728	-0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	177227551	177232605	3	2.3234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	177254965	180374523	1814	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	180378710	180418103	19	-2.2535
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	180433225	180790320	171	-0.0253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	149661	254283	101	0.0363
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	257353	294837	23	0.6354
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	302306	381149	78	0.2517
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	382559	29843434	21553	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	29844034	29849267	7	-1.3593
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	29850196	31286305	675	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	31286531	31296451	9	-1.4846
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	31309924	32452929	508	-0.0206
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	32454275	32454523	2	-1.2688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	32456683	32686196	102	-0.0769
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	32688615	32690027	8	0.4872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	32690797	32690830	3	1.5183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	32692227	48930865	10374	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	48931729	48935200	5	-0.7703
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	48946563	53931067	3320	-0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	53931084	53931855	8	-0.8668
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	53935348	74591858	10523	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	74592225	74601410	10	0.8439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	74603555	77014948	1470	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	77016900	77016926	3	-0.949
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	77016993	77439868	297	-0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	77440048	77452757	20	0.3348
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	77461073	78971712	982	0.02
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	78971781	79045902	114	0.3
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	79046661	81277987	1424	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	81284189	81289534	33	-0.746
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	81294341	103734829	14026	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	103737976	103762061	46	0.6375
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	103765470	134266268	19096	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	134269071	134269632	2	-1.8153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	134272072	143870425	6166	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	143871188	143872597	4	-0.9725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	143874147	153835125	6930	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	153836054	153840970	4	-1.5716
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	153845322	171051005	12056	-0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	43355	54380373	38574	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	54386505	54386517	6	1.4125
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	54393488	66629240	3890	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	66629329	66644504	7	-1.3389
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	66645232	70420438	2400	-0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	70423250	70426141	2	-2.5081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	70428243	72403811	1193	-0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	72406322	72702162	28	-0.3284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	72723383	84940786	6876	-0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	84943544	84948480	4	-1.3436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	84953607	101080923	9343	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	101081798	101081986	2	-1.2416
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	101086258	133785195	19864	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	133785211	133795665	25	0.5821
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	133795704	141762694	5208	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	141763124	141792107	43	-0.4971
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	141795281	142474939	451	0.0253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	142476719	142486495	30	0.8247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	142486560	143223081	468	0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	143223768	143398219	30	-0.2436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	143408430	143977392	361	-0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	143992530	144009564	7	-0.7428
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	144014189	153147638	5591	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	153147645	153147712	2	-2.638
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	153147715	155464029	1788	-0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	155465863	155466938	2	1.473
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	155469636	159127004	2327	-0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	31254	593041	327	-0.0099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	594944	595908	10	1.3865
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	601043	1360130	531	-0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	1360322	1360702	9	-0.5492
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	1360734	2081212	613	-0.0241
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	2081251	2081372	3	-1.7057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	2081407	7193821	6343	-0.0145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7214611	7238019	24	-0.4571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7250380	7744064	112	0.589
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7745979	7747699	4	-0.5142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7752048	7799390	33	0.5698
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7809891	7978171	46	-0.1101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	7978187	8092025	24	0.3838
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	8093182	8385797	286	-0.0192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	8386150	8386442	4	-2.3064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	8388307	11895245	2931	-0.0045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	11934660	12443055	121	0.4141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	12473543	13810119	1302	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	13810229	13815237	5	-0.8247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	13815335	14285211	430	-0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	14286190	14286320	3	-1.3293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	14286552	24972187	8688	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	24974443	24984333	27	0.6443
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	24991104	40771996	10168	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	40777852	40778471	2	-1.9353
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	40783680	112291494	40993	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	112294279	112295260	10	1.259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	112300281	144698933	22422	-6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	144699157	144707808	10	-0.7061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	144718989	146298155	506	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	46587	79770398	38423	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	79770510	79777404	28	0.5379
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	79786128	90522594	7703	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	90554151	90554219	2	-1.8272
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	90557957	138211368	32682	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	138214105	138215622	2	-1.615
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	138216412	140252947	700	-0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	140255642	140255718	2	-1.6221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	140255833	141091394	414	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	72759	4240107	3539	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	4240722	4241572	4	-1.2964
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	4243998	13050005	7398	-0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	13050023	13050170	4	-0.7713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	13050428	17836592	3938	-0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	17859443	17949857	7	0.6303
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	17971816	18242304	27	-0.3989
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	18242635	24375263	4332	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	24377674	24378054	11	-1.9641
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	24378908	46674180	12331	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	46691159	47037567	76	0.6785
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	47041466	47068227	35	0.3103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	47068243	47142307	54	0.848
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	47142322	47771030	204	0.518
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	47897394	47913401	3	-1.3089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	47948060	48736766	291	0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	48771950	49363009	32	0.5459
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	49381611	53199474	2337	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	53199619	53200276	2	-1.1106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	53201249	56445616	2595	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	56452949	56468437	13	0.6284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	56472264	58512855	1363	-0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	58516375	58526837	41	-0.6954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	58532752	61364115	2082	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	61364130	61365264	7	-0.858
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	61365482	64509391	2240	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	64513548	64518152	2	-0.9864
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	64518192	67307936	1787	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	67307951	67314446	26	0.4155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	67322795	81385449	9256	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	81409226	81514190	12	-0.881
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	81523306	88976597	5212	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	89018962	89019812	2	-1.7341
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	89029243	135506704	31840	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	198510	3257511	1255	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	3257643	3257661	2	-1.1427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	3257836	4967650	1220	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	4968117	4976389	34	0.6592
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	4976493	5789869	800	0.0134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	5790812	5808376	24	0.4994
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	5809048	18940870	9426	0.0076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	18949072	18961178	40	-1.1749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	18961281	18961988	17	-0.3357
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	18962016	38238484	14138	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38239703	38242135	3	-1.1595
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38250922	55376023	7711	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	55376236	55442318	43	0.4629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	55444211	81503468	14631	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	81503992	81517158	10	-0.738
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	81522632	86305817	3181	0.0022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	86305875	86306054	3	-3.307
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	86315174	125075288	27037	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	125075301	125083704	30	-0.9424
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	125088270	134601791	7268	-0.0017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	134602280	134609566	8	-0.6837
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	134609942	134944770	277	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	150442	9630556	6202	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	9633870	9728292	25	-1.5005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	9734969	19467012	6637	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	19474770	19580504	53	0.5588
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	19581304	22413637	1962	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22415503	22415533	2	-1.1644
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22415829	22582439	111	0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22594223	22597967	3	-1.0639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22604003	45899825	13532	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	45904438	45909537	4	1.8432
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	45913292	133778189	56555	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	19026949	22484207	2015	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	22484411	22484460	2	1.4278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	22484841	23632678	883	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	23632860	23633515	11	-0.5309
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	23638195	38071135	10655	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	38072036	38084757	16	-2.3177
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	38088330	107382635	45429	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	107384238	107384710	2	-1.1584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	107385235	115108397	5308	-0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	19002124	19557041	40	-0.0399
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	19562139	20423372	148	-0.4878
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	20424926	74001123	34150	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	74006707	74017538	7	-1.1839
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	74020979	106796697	20944	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	106801355	106821736	8	0.7497
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	106825916	106912361	66	0.1066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	106912376	106918094	13	0.3921
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	106918108	107285437	225	0.049
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	20016328	22285769	309	0.0379
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	22287270	22363231	24	-0.6783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	22373070	22383201	7	0.1391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	22385001	22587474	81	-0.6287
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	22673399	35003961	7602	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	35006211	35006724	6	-0.9413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	35008676	45360094	6156	-0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	45367524	45367849	2	-2.4764
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	45370524	52262611	4276	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	52265735	52273284	5	-1.0466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	52275255	54194989	1390	0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	54200350	54202499	3	-1.2116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	54204228	61813884	5473	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	61816722	61817216	3	-1.2253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	61817932	76878362	9021	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	76891241	76895775	22	-1.9037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	76902179	87818875	6719	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	87830530	87870501	40	-0.988
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	87870733	97808409	7488	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	97817792	97832187	11	-0.82
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	97833649	99706891	1408	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	99710381	99739048	18	0.538
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	99742513	102469040	2007	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	60777	110870	25	0.279
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	114026	5607890	2604	-0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	5608089	5608151	2	-1.5203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	5608337	6225027	730	-0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	6231252	6231876	3	-1.0885
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	6231959	14939340	7768	-0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	14951575	15053881	29	-0.2447
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	15054188	15054358	4	0.5645
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	15058358	15127986	41	-0.2502
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	15129905	19944363	2328	-0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	19945650	19967362	29	-3.0858
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	19970254	21389970	905	-0.0146
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	21412403	21620406	37	-0.2929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	21620547	22441974	351	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	22442020	22703862	72	-0.3166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	22704520	23743339	658	-0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23751646	23752031	3	-0.9437
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23752094	32040483	4495	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	32040814	32588621	83	0.3552
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	32588622	32588909	6	0.9872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	32609274	32878329	51	0.3138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	32878335	33097422	24	0.0181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	33101604	33631830	91	0.4017
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	33643399	54478230	5857	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	54478383	54478873	2	-1.0278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	54479223	55796594	1134	-0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	55798222	55822444	18	0.9152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	55829557	88104091	24241	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	88104306	88117015	10	-0.5169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	88117030	90287535	844	-0.0251
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	526	16654301	10509	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	16657331	16741784	16	-0.3869
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	16757147	18319862	918	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	18355392	18465221	29	0.7084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	18469197	44163098	12041	-0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	44165803	44362363	124	0.3832
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	44364170	44764994	50	-0.4804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	44784652	47200068	1243	-0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	47207700	47227049	26	-1.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	47229498	81049726	20347	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	11543	4700983	3377	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4705870	4709510	4	-1.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4710695	38258727	19464	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	38260420	38265389	19	0.4339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	38268024	51266861	8976	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	51267097	51267392	6	0.7649
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	51268184	63200466	8149	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63200479	63207257	21	0.8939
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63207273	63564565	242	-0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63565035	63565873	6	-0.6584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63568144	63721579	110	-0.0152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63727492	63728340	12	-1.7893
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	63732738	78015057	10437	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	19	90910	56282070	27505	0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	19	56282369	56283067	4	-1.2571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	19	56286293	59097854	1847	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	61305	1560999	1206	0.0077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	1561580	1590257	37	1.3803
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	1590455	1593893	4	0.6171
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	1597946	62916068	41252	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	62954695	62956153	5	0.7855
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	21	10736871	48096957	24410	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	16052528	16361969	44	-0.1982
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	16365495	16386614	3	-1.1909
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	16386651	16477054	18	-0.3082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	16477516	17279113	168	-0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	17284533	17288220	8	-1.1763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	17299901	18732919	975	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	18748440	18748454	2	1.2607
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	18770421	20473346	934	-0.0028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	20491884	20662706	3	1.2435
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	20705775	21595178	703	-0.0039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	21607084	21708108	4	0.7246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	21721603	21816560	20	0.0164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	21816691	21840595	11	0.4039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	21840674	22294301	189	-0.0303
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22297659	22298378	4	-0.874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22303413	22503523	296	-0.0061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22503549	22503653	3	-0.8425
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22503853	22752462	263	-0.0184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22752680	22752880	4	-1.4081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	22757321	24283016	940	-0.0149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24283098	24288434	5	-1.0704
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24288457	24330218	20	-0.1282
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24330269	24332933	4	-1.9577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24337307	24344422	3	0.0257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24350529	24396814	19	0.658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	24401529	51234455	18917	-0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	168477	28284470	17355	-0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	28285001	28286513	2	-1.7007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	28286692	149542406	64299	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149544089	149549959	12	-1.0655
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149560899	150292898	511	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	150293934	150295459	2	0.9749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	150296555	151262143	696	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	151265620	151273264	4	-1.2874
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	151273331	155182354	1732	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	2650438	6101425	872	-2.6221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	6107901	6429434	131	-3.8609
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	6438630	7399842	422	-2.9918
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	7400746	9823373	1221	-3.3467
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	9826040	15590276	933	-3.0749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	15590342	15594523	3	-7.6439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	15594889	19034392	1826	-3.1923
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	19038302	19297985	113	-3.7329
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	19300250	19570632	142	-3.0717
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	19571480	21088297	705	-3.7233
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	21088485	23859163	1053	-3.1921
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	23859468	24359931	112	-3.7403
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	24361272	24515802	80	-3.0804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	24516081	26190025	314	-3.8424
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26193050	26408766	50	-3.1469
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26409789	26430674	11	-4.1003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26430908	26469059	17	-2.1157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26473956	26510575	9	-2.8318
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26510799	26631228	11	-3.4865
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26631371	26802327	28	-4.8741
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	26803166	27436702	57	-3.8929
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	27444915	27529084	33	-2.6484
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	27535030	27600323	21	-3.9795
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	27601827	27720551	37	-2.7166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	27721084	28463526	264	-3.7617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	Y	28464340	59018259	170	-2.8274
