Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	3208470	214691511	109180	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	214701837	214718482	21	-1.0582
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	214721046	225841528	7018	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	225843772	225844645	2	-1.3094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	225845134	245880329	12830	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	474222	242124735	131254	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	526235	199023074	106363	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	1043934	189836143	102701	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	967233	74216965	39374	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74219619	74221829	3	-1.184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74227881	180293075	61100	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	959281	170745844	96452	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	671810	158077879	81294	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	607667	145304484	81513	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	779932	140058573	68005	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	405240	135075077	80841	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	446120	38195060	23882	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38196279	38198711	3	-1.1595
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38207498	133647740	53351	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	760163	22304904	12405	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22306770	22306800	2	-1.1644
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22307096	22473706	111	0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22485490	22489234	3	-1.0639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22495270	131671419	61407	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	18348806	21382207	1328	-0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	21382411	21382460	2	1.4278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	21382841	106180636	50551	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	106182239	106182711	2	-1.1584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	106183236	114005560	4747	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	19571208	105059083	49437	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	21238778	32341649	4573	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	32342365	32342389	2	0.9967
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	32360369	32791253	98	-0.0313
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	32793503	32794016	6	-0.9413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	32795968	59601176	16493	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	59604014	59604508	3	-1.2253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	59605224	97524414	22377	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	97527904	97556571	18	0.538
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	97560036	99701830	950	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	593460	23650840	10081	-0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23659147	23659532	3	-0.9437
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23659595	87907437	30773	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	933971	28334147	12334	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	28335790	28336528	2	-1.1578
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	28336640	44555067	6693	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	44562699	44582048	26	-1.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	44584497	78510305	17922	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	319586	4690983	2179	0.008
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4695870	4699510	4	-1.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4700695	75210228	40467	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	19	235018	63570038	23944	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	403764	61690281	37271	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	21	14269492	46503202	20578	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	15803930	47717016	16919	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	3167107	149293064	62075	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149294747	149300617	12	-1.0655
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149311557	154558783	1684	0.0092
