Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	3218610	216624888	109239	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	216635214	216651859	21	-1.0582
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	216654423	227774905	7017	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	227777149	227778022	2	-1.3094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	1	227778511	247813706	12828	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	2	484222	242476062	131246	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	3	2212571	197538677	106357	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	4	1053934	188763651	102706	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	914233	74181209	39375	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74183863	74186073	3	-1.184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	5	74192125	180360469	61099	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	6	1014281	170903919	96461	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	7	705284	158385118	81295	-3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	8	617667	145232496	81520	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	9	789932	140938752	68017	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	10	415240	135225087	80839	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	456120	38238484	23879	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38239703	38242135	3	-1.1595
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	11	38250922	134142530	53344	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	889902	22413637	12402	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22415503	22415533	2	-1.1644
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22415829	22582439	111	0.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22594223	22597967	3	-1.0639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	12	22604003	133161346	61405	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	19450806	22484207	1328	-0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	22484411	22484460	2	1.4278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	22484841	107382635	50547	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	107384238	107384710	2	-1.1584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	13	107385235	114987458	4747	-0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	14	20501368	105988038	49435	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	23687685	34554357	4574	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	34555073	34555097	2	0.9967
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	34573077	35003961	98	-0.0313
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	35006211	35006724	6	-0.9413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	35008676	61813884	16491	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	61816722	61817216	3	-1.2253
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	61817932	99706891	22377	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	99710381	99739048	18	0.538
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	15	99742513	101884307	949	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	653459	23743339	10081	-0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23751646	23752031	3	-0.9437
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	16	23752094	89379936	30707	4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	987221	31310034	12334	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	31311677	31312415	2	-1.1578
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	31312527	47200068	6693	-0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	47207700	47227049	26	-1.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	17	47229498	80917016	17922	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	329586	4700983	2181	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4705870	4709510	4	-1.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	18	4710695	77109240	40462	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	19	284018	58878226	23944	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	20	455764	62219837	37274	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	21	15347621	47678774	20577	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	22	17423930	49331012	16918	-0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	3157107	149542406	62092	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149544089	149549959	12	-1.0655
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F08_896558	X	149560899	154905589	1684	0.0088
