Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	1	3208470	245880329	128890	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	474222	170944534	90412	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	170944727	170944776	2	-2.2984
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	170950373	187477393	9417	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	187477654	187483626	2	-1.8436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	187489924	234762693	26852	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	234763476	234764108	2	-1.6657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	234764622	242124735	4457	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	526235	48687081	27202	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	48687426	48688671	3	-2.2335
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	48690317	199023074	79055	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	1043934	151385687	82639	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	151386381	151386384	3	-1.5466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	151388750	189836143	19972	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	967233	2990136	1004	0.0125
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	2991674	2992043	2	-2.1169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	2994346	159778833	87043	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	159778988	159782164	2	-3.3097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	159782798	180293075	12321	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	6	959281	170745844	96380	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	7	671810	158077879	81225	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	607667	98259805	53404	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	98261091	98285328	8	-1.0709
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	98287563	145304484	28008	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	9	779932	140058573	67934	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	10	405240	68380518	39405	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	10	68380602	68381237	2	-2.0936
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	10	68381804	135075077	41360	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	11	446120	133647740	77153	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	12	760163	131671419	73861	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	18348806	61517152	25138	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	61517813	61532148	7	-1.0252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	61535974	114005560	31434	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	14	19571208	105059083	49397	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	21238778	46839961	12820	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	46840101	46840765	2	-1.4588
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	46846128	70598456	15123	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	70600205	70601797	3	-1.4488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	70612982	99701830	16525	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	16	593460	87907437	40816	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	17	933971	78510305	36937	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	319586	71039641	39859	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	71039765	71040667	2	-1.773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	71041267	75210228	2751	-0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	19	235018	63570038	23921	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	20	403764	61690281	37236	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	21	14269492	46503202	20562	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	15803930	23940941	1662	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	23941005	23941492	2	-1.5799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	23943103	47717016	15225	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	3167107	92853607	35456	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	92854158	92854660	3	-4.4014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	92859656	110183929	7758	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	110183966	110184482	2	-4.2172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	110187315	154558783	20192	0.01
