Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	1	3218610	247813706	128946	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	484222	171236288	90402	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	171236481	171236530	2	-2.2984
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	171242127	187769148	9417	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	187769409	187775381	2	-1.8436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	187781679	235097954	26853	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	235098737	235099369	2	-1.6657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	2	235099883	242476062	4458	-0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	2212571	48712077	27201	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	48712422	48713667	3	-2.2335
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	3	48715313	197538677	79050	0.0021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	1053934	151166237	82644	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	151166931	151166934	3	-1.5466
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	4	151169300	188763651	19972	-0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	914233	2937136	1004	0.0125
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	2938674	2939043	2	-2.1169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	2941346	159846255	87040	6e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	159846410	159849586	2	-3.3097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	5	159850220	180360469	12324	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	6	1014281	170903919	96389	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	7	705284	158385118	81226	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	617667	98190629	53408	-2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	98191915	98216152	8	-1.0709
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	8	98218387	145232496	28011	0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	9	789932	140938752	67946	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	10	415240	135225087	80765	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	11	456120	134142530	77143	3e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	12	889902	133161346	73856	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	19450806	62619151	25135	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	62619812	62634147	7	-1.0252
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	13	62637973	114987458	31433	-0.0013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	14	20501368	105988038	49395	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	23687685	49052669	12821	-1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	49052809	49053473	2	-1.4588
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	49058836	72811402	15121	-0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	72813151	72814743	3	-1.4488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	15	72825928	101884307	16524	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	16	653459	89379936	40750	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	17	987221	80917016	36937	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	329586	72910653	39856	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	72910777	72911679	2	-1.773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	18	72912279	77109240	2751	-0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	19	284018	58878226	23921	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	20	455764	62219837	37239	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	21	15347621	47678774	20561	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	17423930	25610941	1662	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	25611005	25611492	2	-1.5799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	22	25613103	49331012	15224	5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	3157107	92966951	35466	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	92967502	92968004	3	-4.4014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	92973000	110297273	7763	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	110297310	110297826	2	-4.2172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_F11_896602	X	110300659	154905589	20194	0.01
