Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	1	3218610	247813706	129108	0.0956
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	2	484222	14713984	8875	-0.0441
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	2	14714466	14716007	2	-1.5497
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	2	14721287	242476062	122361	0.0338
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	3	2212571	20237079	10761	-0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	3	20240260	20591894	206	-0.3406
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	3	20595368	141324556	66877	-0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	3	141332749	141417045	58	-0.8003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	3	141417502	197538677	28447	-0.0241
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	1053934	55593865	30145	-0.0373
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	55596008	55996903	282	0.2543
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	56003117	90262758	19099	-0.0311
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	90266097	181521851	49971	-0.2765
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	181525131	182234918	137	-0.754
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	4	182246456	188763651	3070	-0.2981
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	5	914233	118757731	63413	0.0789
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	5	118760670	118900232	74	-0.385
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	5	118905183	180360469	36996	-0.0246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	1014281	49286827	29001	0.6
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	49288344	49288625	3	-0.346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	49289855	50942635	907	0.571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	50947200	70962164	8661	0.2274
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	70962181	100897232	16581	-0.3496
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	100898935	100947671	26	-0.9081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	100949822	122758050	12255	-0.3482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	122758817	122801935	27	-0.7512
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	6	122802147	170903919	28969	-0.3448
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	7	705284	158385118	81299	0.508
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	8	617667	42933372	24748	0.2346
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	8	47460945	127708294	46044	0.5684
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	8	127708875	127717198	9	-0.077
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	8	127727973	145232496	10722	0.5641
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	789932	17936045	10358	-0.3463
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	17936235	17936353	2	-2.2037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	17936628	19677543	1480	-0.3391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	19678269	23382382	2529	-0.744
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	23386738	27054494	2125	-0.3339
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	27065021	27142786	60	-0.8825
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	27144483	27144516	2	-3.02
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	27145518	28376005	853	-0.7909
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	28376898	124343593	41875	-0.3302
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	124343700	125259049	594	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	9	125263685	140938752	8108	-0.3334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	10	415240	96591062	56355	-0.1764
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	10	96591284	97559694	618	0.085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	10	97561941	97562683	2	-0.96
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	10	97568457	97868205	128	0.0503
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	10	97870490	135225087	23722	-0.262
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	11	456120	131906140	76049	-0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	11	131907413	131907828	2	0.9908
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	11	131908426	134142530	1178	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	12	889902	133161346	73926	-0.027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	19450806	21112470	507	-0.3709
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	21112935	22105664	561	-0.753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	22115232	114080374	55328	-0.3421
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	114082706	114084511	3	-1.6886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	114085867	114263719	80	-0.3576
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	114264477	114265190	3	-1.1585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	13	114265305	114987458	126	-0.334
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	20501368	25545326	2131	-0.3285
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	25546905	25547232	2	0.937
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	25547470	28788889	1803	-0.3185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	28791634	30011402	669	0.0243
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	30011445	30094252	62	0.3551
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	30094633	30100459	5	0.0138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	30100624	30342818	143	-0.3427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	30343290	31111860	417	0.028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	31113001	33110240	1157	0.2853
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	14	33112819	105988038	43024	-0.3272
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	23687685	25901268	1126	0.2688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	25906219	41247476	7623	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	41251177	53771068	6962	-0.3313
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	53771080	54785032	774	0.0398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	54786925	58995976	2575	-0.32
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	58996927	62260091	2471	-0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	62274940	65790228	2044	-0.3594
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	65792839	66409228	360	-0.0133
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	66410651	66411268	3	-1.3846
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	66412257	68159519	1152	0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	68159729	68162131	2	-1.1192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	68164355	84735306	9112	0.1399
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	84735864	88395998	2042	-0.3491
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	88396099	94031959	3575	0.015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	94032423	98179897	2629	-0.3464
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	15	98180905	101884307	2059	0.146
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	16	653459	89379936	40776	-0.2073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	17	987221	30746937	12004	-0.0498
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	17	30748145	80917016	24975	0.2182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	329586	2228912	625	-0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	2236418	31844029	15525	0.3129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	31847871	38451611	4023	-0.0478
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	38455134	38455147	2	-1.3854
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	38456889	67286777	17768	0.1819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	67286903	67287029	3	-2.0532
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	18	67288646	77109240	4696	0.2
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	19	284018	7304492	2025	-0.0386
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	19	7309687	7325273	4	0.9928
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	19	7344986	44671910	16071	-0.043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	19	44676148	44943199	144	-0.3532
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	19	44943480	58878226	5701	-0.0557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	20	455764	42064106	23885	0.1892
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	20	42064643	42068274	3	-0.8599
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	20	42073457	62219837	13392	0.042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	21	15347621	47678774	20569	-0.3455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	22	17423930	49331012	16918	-0.0246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	X	3157107	32163772	13260	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	X	32180566	32624714	299	-0.4518
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	X	32625419	44837344	5162	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	X	44837462	44920236	30	-0.4734
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G03_896632	X	44920831	154905589	45008	0.0059
