Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	61735	62114006	35670	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	62114181	62118187	3	-3.2089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	62119809	72759524	7374	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	72760856	72811904	52	0.6162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	72812440	81888456	5787	0.0045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	81888602	81888605	2	1.9963
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	81888667	112690326	19912	0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	112695965	112697390	25	0.5567
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	112705956	121187015	5121	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	121187379	121192495	2	1.348
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	121193600	152555795	2920	0.0207
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	152555884	152575461	21	-0.752
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	152579449	152759678	182	-0.023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	152761923	152768700	37	0.6439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	152773905	161468528	5264	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	161471384	161648237	62	0.2705
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	161648621	169216937	6014	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	169233974	169242401	8	0.5987
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	169254877	174797333	3532	0.0084
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	174797385	174797448	2	1.6054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	174797505	238506666	43287	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	238508989	238512614	3	-2.222
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	238514420	248737447	7258	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	248749194	248809109	37	-0.752
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	1	248809369	249224388	141	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	12784	34691069	24107	0.0047
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	34699315	34740799	52	0.4916
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	34741027	41238235	4826	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	41238443	41243427	20	-0.577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	41243455	52764208	8214	0.0056
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	52764229	52781542	24	0.5424
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	52787949	87128201	22009	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	87129203	87137385	2	-1.8807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	87161853	106874722	7663	-0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	106880095	106883229	5	-1.0686
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	106883331	106885357	7	-3.0477
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	106887255	127852021	12423	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	127857046	127857763	2	1.8871
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	127857946	135056484	4199	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	135056675	135056870	2	2.1453
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	135058257	146864429	7328	0.0095
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	146864443	146866934	22	0.8391
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	2	146877806	243089456	59153	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	60345	75421170	52761	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	75427107	75639507	76	-0.588
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	75645384	85555434	5506	0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	85561003	85619079	37	-0.2935
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	85620955	95456106	3601	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	95466880	95468110	2	-2.0455
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	95468680	98937784	1856	0.0137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	98944458	98949308	36	0.667
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	98949314	128384523	18116	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	128386602	128412331	14	0.6436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	128414161	129760622	623	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	129761124	129786374	11	-0.5497
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	129786739	129798735	37	-1.6164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	129798781	162532950	20311	0.0068
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	162534730	162540490	6	2.1028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	162545716	192877902	19248	0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	192877962	192882903	19	-1.2161
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	3	192886435	197896118	2707	0.0099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	12281	10210390	5801	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	10214160	10231498	29	-1.9889
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	10234214	10390122	177	-0.028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	10390715	10402718	18	0.5308
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	10402746	11199582	668	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	11199712	11200102	2	-1.5617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	11200248	34765771	16132	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	34770306	34830004	52	0.5364
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	34831818	49267848	8982	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	49291192	49291355	2	-1.8823
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	49297220	64692979	7597	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	64693940	64705785	21	-0.7392
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	64707581	64708258	8	-2.3765
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	64716431	69220383	2852	-0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	69226848	69284591	12	0.5908
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	69288138	69288142	3	-1.5118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	69294799	89836819	12644	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	89836908	89854127	3	-1.6882
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	89854133	95162960	3073	0.0117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	95163122	95164589	2	-1.3381
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	95165475	104744735	5784	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	104745071	104753601	11	0.722
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	104753737	138080761	19584	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	138082638	138093414	22	-0.4462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	138094958	152789786	8883	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	152791533	152792546	11	-1.0886
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	152792567	152795388	6	0.7576
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	152795773	172375027	12575	0.0081
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	172376974	172377776	9	0.6435
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	172380371	172987928	396	0.0368
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	172989148	173000821	16	0.8355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	173001831	173428471	233	0.0402
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	173428588	173428643	2	1.4487
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	173441132	183730650	7017	0.0096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	183731737	183731744	2	1.7893
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	4	183735262	191027923	4865	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	15532	685748	307	0.0485
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	698371	779881	31	0.4914
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	781547	7169476	5411	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	7177338	7189925	26	-0.8962
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	7202635	46271108	25045	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	46271930	46273502	6	1.1557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	46278212	61573372	7951	0.0038
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	61574991	61576273	2	-3.8694
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	61582192	65900931	2503	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	65903528	65906564	2	-1.342
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	65908576	75450020	5118	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	75450067	75450144	3	1.3604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	75450176	103851221	16409	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	103860373	103860604	4	1.6272
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	103861049	151513988	30804	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	151514019	151518351	18	0.4843
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	151520271	171532597	13864	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	171532887	171533782	2	1.6308
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	171536673	177198449	3640	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	177227551	177232605	3	2.264
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	177254965	180378888	1815	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	180380203	180433225	18	0.6408
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	5	180433264	180790320	170	0.0374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	149661	294837	124	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	302306	381149	78	-0.3237
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	382559	29837072	21537	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	29837187	29874808	24	0.8073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	29876959	30063368	110	0.0404
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	30064562	30065319	3	1.2763
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	30065416	31280823	552	0.0233
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	31286276	31287501	6	-2.0259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	31295406	67038046	19831	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	67040913	67042897	6	-2.0691
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	67043192	69653759	1848	0.0118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	69657055	69661241	2	1.5658
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	69662367	69686629	18	0.1317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	69687698	69691368	4	-1.2555
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	69697406	70173296	286	-0.0173
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	70178460	70182136	3	-1.8968
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	70186272	74591858	2858	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	74592225	74601410	10	0.7911
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	74603555	77014948	1469	-0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	77016900	77017069	7	1.1933
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	77017077	77429730	290	0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	77436159	77468588	27	0.3255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	77468623	78962889	974	-0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	78969065	79035185	112	-2.2487
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	79039234	95190723	10379	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	95193106	95193725	2	1.7712
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	95196646	95253218	42	0.0738
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	95253851	95253854	2	1.3481
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	95256763	103747453	5072	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	103747471	103747610	3	1.5103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	103747730	148506612	28366	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	148506944	148507255	2	-1.8752
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	6	148508517	171051005	15922	0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	43355	9804567	5916	0.0197
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	9805492	9830976	25	-0.7631
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	9835512	19200680	7645	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	19200815	19221938	46	0.3214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	19221979	38290714	13807	8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	38294101	38357323	103	-0.4262
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	38358227	63651298	13698	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	63651845	63657761	2	1.8463
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	63662156	91357869	15740	0.0025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	91358294	91359033	7	1.0283
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	91359336	100325189	5055	0.002
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	100329244	100329265	2	-2.7926
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	100332842	101052486	265	-9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	101059732	101059949	2	-2.212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	101062911	109441212	5102	0.0087
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	109441244	109453910	11	0.725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	109453982	126046543	10049	0.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	126046600	126046615	2	1.4447
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	126046876	133785177	4707	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	133785195	133806244	37	0.407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	133808792	142326657	5601	0.0016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	142331352	142474939	89	-0.2611
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	142476719	142486045	27	-2.0606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	142486115	143909249	842	0.0358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	143909445	144066947	40	-0.7401
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	144074929	145133371	668	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	145136645	145136782	2	-1.281
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	145137354	153147638	4911	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	153147645	153147712	2	-2.3216
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	153147715	155464029	1788	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	155465863	155466938	2	1.5599
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	155469636	158972565	2222	0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	158972775	158980977	3	-1.0444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	7	158983969	159127004	102	0.0344
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	31254	7935855	8035	0.0133
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	7943182	8018037	36	-0.3459
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	8018038	39230659	22841	0.0058
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	39235603	39386965	59	0.7236
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	39388299	137677896	59837	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	137681619	137863407	177	-0.7611
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	8	137863880	146298155	5004	0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	46587	28303495	24249	0.0096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	28303612	28311629	4	1.4141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	28312061	29088729	556	0.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	29089610	29097680	6	1.0869
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	29100799	41629280	6536	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	41629489	44250853	114	-0.2359
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	44251228	44259163	4	1.1216
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	44261256	106566497	25308	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	106568696	106569290	2	-2.7259
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	106570702	125781902	14681	2e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	125782622	125786577	2	-2.2258
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	9	125787022	141091394	8490	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	10	72759	68078212	45391	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	10	68079173	68109338	30	-0.8185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	10	68122532	135229141	45526	0.0031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	10	135229719	135229868	2	-2.0947
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	10	135232654	135506704	151	-0.0168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	198510	4967396	2477	0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	4967650	4974029	27	-1.3585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	4975164	5783682	800	0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	5783923	5809139	34	0.4775
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	5809338	18949072	9430	0.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	18949109	18958667	32	-0.3757
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	18958890	24442106	4391	-0.0027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	24442174	24450257	7	-0.8333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	24455176	25219111	585	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	25219145	25221012	2	1.6649
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	25224253	55376677	16896	0.0064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	55376682	55442318	34	-0.4239
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	55444211	91830489	21394	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	91830658	91831043	2	3.0969
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	91832704	133817472	30211	0.0024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	133817656	133818097	2	1.6761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	11	133819442	134944770	840	0.0461
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	150442	43247903	26930	0.0069
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	43248117	43248885	3	1.7461
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	43250357	45904438	1597	0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	45905840	45909537	3	-1.8192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	45913292	129228886	53469	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	129230513	129232142	5	-1.4522
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	12	129232297	133778189	3087	0.0169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	13	19026949	38072036	13567	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	13	38072224	38088387	18	0.6453
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	13	38088609	51545054	9122	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	13	51546911	51549198	2	2.3996
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	13	51549557	115108397	41607	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	19002124	19660853	47	0.0507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	19689317	20422583	142	-0.4608
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	20423372	22455697	1416	-0.0178
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	22457104	22950491	420	-0.2706
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	22953607	74006707	32310	0.0043
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74006851	74020979	7	-1.6799
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74029900	74420476	196	-0.0023
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74423777	74423782	2	-1.2386
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74425056	74570902	81	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74571058	74579469	16	0.4302
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	74581521	88403376	9236	0.0054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	88403394	88413885	18	0.5172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	88414283	106460902	11245	-4e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106479675	106479941	2	-1.7723
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106482128	106526966	20	-0.1643
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106530364	106567100	18	0.7608
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106569463	106715489	66	-0.0345
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106717356	106736924	11	-0.6137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106740347	106751284	7	0.2304
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106753859	106753867	3	1.6256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106754003	106796025	16	0.0549
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106796228	106802053	6	-0.8273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106815943	106849676	20	-0.0772
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106850909	106958242	80	0.2179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	14	106959642	107285437	208	-0.0507
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	20016328	24669656	1426	0.0221
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	24669745	24714839	36	-0.4642
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	24714858	30780663	3741	0.0159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	30792569	30795789	2	2.3517
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	30807942	65814102	22601	0.0032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	65816942	65817524	2	-2.7283
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	15	65818387	102469040	24259	0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	60777	5607890	2629	0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	5608089	5608151	2	-1.6811
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	5608337	6846271	1540	9e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	6848188	6851695	3	1.4529
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	6852187	7012472	169	0.0292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	7013200	7013568	2	1.9408
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	7015770	16585264	7453	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	16592713	16663576	11	0.6944
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	16666983	16708594	10	-0.0462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	16714007	16716027	2	1.801
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	16739263	20628688	2216	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	20629078	20633345	4	1.0675
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	20635985	32875797	6180	0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	32878329	32950253	14	0.536
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	32951302	55796594	7095	0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	55798222	55798779	3	2.6887
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	16	55804348	90287535	25105	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	526	665044	337	0.0421
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	667243	667377	2	2.1444
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	678491	39423090	20646	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	39423103	39430450	18	1.3993
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	39430531	44208333	2547	0.0182
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	44208674	44429320	100	-0.317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	44435454	78628863	20692	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	78629793	78634179	2	2.1409
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	17	78634300	81049726	963	0.0114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	11543	7748661	5580	0.0137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	7752784	7755226	2	1.9214
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	7755352	57917785	30716	0.0062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	57917798	57922111	12	0.7036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	57922214	77884825	14431	0.0089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	77885421	77885837	2	1.9761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	18	77890637	78015057	76	0.051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	90910	367089	75	0.0218
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	376382	388950	4	1.1319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	389805	15784152	6553	0.0074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	15790085	15791617	2	1.6598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	15791664	35849309	10190	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	35849322	35866801	26	-0.4716
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	19	35866954	59097854	12506	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	20	61305	1552503	1185	0.02
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	20	1557190	1560562	16	-0.7777
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	20	1560787	1560999	5	-0.1539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	20	1561580	1593893	41	1.4861
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	20	1597946	62956153	41260	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	10736871	14597009	165	-0.1327
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	14597032	14603577	3	1.5218
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	14612609	44817248	22378	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	44822257	44841812	13	0.6429
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	44848070	44968053	84	0.0571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	44970873	44972812	2	-2.4325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	21	44973667	48096957	1766	0.0276
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	22	16052528	16061342	5	-0.9448
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	22	16077141	34173406	11910	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	22	34174947	34174962	2	-1.9176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	22	34174973	51234455	11648	0.0051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	X	168477	84989938	44450	0.0026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	X	84989951	85006605	13	1.189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	X	85006839	155182354	40076	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_G10_896568	Y	2650438	59018259	8635	-0.8714
