Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	61735	22320515	12235	0.0098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	22323157	22338125	7	-1.3074
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	22342389	35091674	6913	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	35102654	35104491	20	-0.6131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	35114268	72768498	23853	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	72768916	72811148	46	-1.2613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	72811904	89475255	10970	0.0099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	89477958	89478205	2	-3.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	89481524	104157336	9097	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	104158309	104159384	3	-3.1495
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	104163499	104268222	27	-0.6447
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	104303403	108729759	2875	0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	108734235	108734877	2	-4.7199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	108737496	110227515	725	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	110232974	110242953	18	1.1671
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	110244998	112690326	1955	-0.0036
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	112695965	112705956	26	-0.3531
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	112706060	149036524	6375	0.0212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	149040066	149415966	157	-0.5133
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	149421517	152555527	1500	0.0189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	152555706	152586238	31	2.6142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	152586278	152586594	4	1.1279
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	152590494	152759678	171	0.0606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	152761923	152768700	37	0.619
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	152773905	222366668	47083	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	222374834	222377004	2	-3.2401
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	222382134	227064720	2806	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	227069677	227071392	2	-1.6416
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	227071960	229811169	1637	0.0091
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	229816856	229820196	3	-2.6898
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	229820456	243044281	10198	-5e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	243044307	243179482	88	0.2796
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	1	243179580	249224388	3768	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	12784	4205687	2986	0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	4213864	4223167	36	-0.5605
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	4223512	14703694	8016	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	14704949	14710021	11	-1.1096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	14710092	32526052	11503	0.0012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	32531108	32531942	2	-1.4955
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	32539236	34683290	1541	0.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	34685280	34738032	50	0.4762
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	34740639	129638478	56202	0.0105
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	129638502	129640315	14	-0.942
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	129640329	146864429	10479	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	146864443	146866934	22	-1.8884
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	2	146877806	243089456	59139	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	60345	1256380	1000	0.0486
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	1256760	1256766	2	-3.5901
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	1256852	36283731	25555	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	36283957	36285030	3	-2.4104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	36285279	37977417	1117	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	37982108	37986807	16	-0.8728
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	37986883	53023211	8081	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	53028375	53039116	37	-0.577
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	53039217	98937784	27994	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	98944458	98949421	38	0.5
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	98950964	129763698	18742	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	129766586	129806236	51	0.6005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	129806924	135779416	3939	0.0045
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	135783627	135790248	2	-1.3236
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	135791219	136019099	94	0.0201
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	136022951	136025426	2	-2.6304
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	136038541	173235883	22684	0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	173236903	173289680	25	0.6046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	173300193	189360754	10289	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	189363678	189364638	11	-0.913
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	189370988	192877902	2497	0.0114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	192877962	192882903	19	-1.2447
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	3	192886435	197896118	2705	0.027
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	12281	69374955	42369	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	69375160	69485979	63	0.4622
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	69489335	115173700	27739	0.0029
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	115175323	115182175	23	0.831
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	115184229	138092420	13256	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	138092516	138094972	15	-0.5806
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	4	138095121	191027923	34009	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	15532	12800889	10217	0.0126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	12815780	12838533	14	-1.1745
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	12849201	15718492	1977	0.0115
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	15719222	15720597	11	-0.6625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	15723346	46196114	18562	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	46199434	46199435	2	-1.5792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	46209299	46251306	13	0.0337
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	46271008	46273502	8	0.9591
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	46278212	57329115	5083	0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	57329530	57333533	28	-0.3884
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	57338357	113324270	33240	0.0066
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	113327005	113335389	11	-0.8062
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	113336968	151514171	24410	0.0042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	151515386	151518351	14	-3.1606
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	151520271	155475105	2659	-0.0011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	155476772	155482729	14	-2.2754
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	155495250	180374484	16639	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	180374523	180417207	16	0.6189
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	5	180417614	180790320	175	0.0873
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	149661	5566376	4488	0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	5566772	5583525	12	-1.3358
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	5587549	7418240	1524	-0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	7425258	7427350	3	-1.4603
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	7427461	29837072	15709	0.011
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	29837187	29916486	44	0.3382
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	29916505	32452929	1164	0.0561
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	32454275	32570365	32	1.5113
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	32573771	32690027	80	0.2728
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	32690797	32690830	3	2.9061
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	32692227	53931151	13695	0.0093
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	53931230	53931855	6	1.2519
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	53935348	66393348	5055	0.0168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	66394090	66403852	25	-0.6992
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	66407127	74591858	5439	0.0103
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	74592225	74603555	11	0.7906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	74603605	77436532	1768	0.003
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	77439868	77452382	15	-3.8039
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	77452392	77452757	6	-1.3504
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	77461073	78962581	976	0.0034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	78962626	79027128	104	0.3317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	79027245	103734829	15498	0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	103737976	103762049	45	-1.2181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	6	103762061	171051005	44243	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	43355	16697438	11435	0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	16700447	16701844	10	-1.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	16709708	64568852	30263	0.0095
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	64594065	64595104	4	-1.1744
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	64595118	109433798	25658	0.012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	109437092	109437772	15	-0.7947
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	109437774	109441212	9	0.1785
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	109441244	109453910	11	-2.1579
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	109453982	126044974	10039	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	126045482	126046876	13	-1.0664
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	126046877	133785177	4705	0.0083
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	133785195	133790443	23	-1.8941
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	133795634	141763124	5209	7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	141769643	141787646	33	-0.4794
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	141787899	142474939	459	-0.0082
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	142476719	142479531	6	-3.2432
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	142479665	142485771	17	-1.4549
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	142485785	142486045	4	-3.0383
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	142486115	143218858	469	0.0119
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	143218968	143532998	91	0.3376
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	7	143543851	159127004	10019	0.0185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	31254	253531	99	0.0837
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	258508	262087	8	-1.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	262188	595875	228	0.0939
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	595892	595908	2	4.0822
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	601043	2701934	1784	0.0378
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	2703533	2703899	7	-1.2191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	2707171	7215726	5712	0.0375
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	7215742	7798851	166	-0.4607
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	7799390	11895245	3291	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	11934660	12034997	10	-0.7106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	12162739	14682907	2278	0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	14682978	14683156	2	-1.9412
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	14685063	24974522	8258	0.009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	24974577	24991104	25	0.6566
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	24991127	112291494	51134	0.0052
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	112294279	112295260	10	1.3156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	112300281	115632043	1828	0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	115634487	115635701	13	-0.808
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	115638350	115641072	13	-0.098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	115641136	115641731	9	-0.9234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	8	115650697	146298155	21069	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	46587	592306	483	0.0554
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	592552	592567	2	-1.4863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	592718	602903	28	-0.0169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	606699	606961	4	-1.7986
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	607307	68183981	31143	0.0153
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	68186051	68186059	5	1.7652
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	9	68188340	141091394	48248	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	72759	24375263	19236	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	24377674	24378054	11	0.9413
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	24378908	58512855	19329	0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	58516375	58526837	41	-0.716
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	58532752	67306276	6113	-8e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	67307923	67314401	26	0.5881
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	67314430	81383874	9250	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	81383884	81497471	14	-0.8613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	81514175	88976597	5211	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	89018962	89019812	2	-1.6384
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	10	89029243	135506704	31833	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	198510	4967396	2476	0.0141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	4967650	4976892	43	0.5935
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	4976907	5789741	790	0.0297
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	5789869	5809338	28	-0.5562
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	5809461	18940870	9423	0.0033
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	18949072	18972152	72	0.3445
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	18972360	25219111	4945	0.0044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	25219145	25221012	2	-1.5953
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	25224253	49699567	16087	0.0046
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	49701318	49758987	27	-0.617
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	49759555	51183575	378	0.0421
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	51183694	51195051	4	-0.9719
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	51205141	55376280	384	0.0585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	55376498	55452977	50	-0.4476
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	55453009	60965476	3409	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	60984460	61000494	2	-1.5028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	61015806	83668182	12620	0.0067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	83668185	83670320	2	-2.4502
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	83670325	89529607	3888	0.0101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	89535468	89550224	7	-0.9639
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	89567541	92934333	2302	0.0096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	92936162	92938484	3	-3.2825
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	92941753	93020483	39	-0.0138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	93021243	93029461	2	-3.3199
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	93030453	101594384	6357	0.0055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	101597860	101597964	4	1.2503
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	101598212	126676389	17356	0.004
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	126676514	126677196	2	-1.5381
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	11	126678646	134944770	6406	0.005
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	150442	10580460	6862	0.0166
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	10583367	10595806	5	-1.0364
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	10596720	30235581	13709	0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	30239267	30243575	19	-0.6482
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	30243590	72277077	24067	0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	72277502	72283279	2	-1.5513
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	72288762	86095591	8642	0
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	86095854	86095911	2	-1.2556
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	86096051	90483347	2494	-0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	90483350	90492074	8	0.7988
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	12	90493557	133778189	29241	0.0073
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	19026949	32532622	9642	0.0144
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	32532727	32538423	17	-0.9427
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	32540047	38072036	3904	0.0048
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	38072224	38084757	15	-2.2552
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	38088330	57660757	12492	0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	57663006	57673830	11	-1.013
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	57676364	58584790	488	0.031
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	58590281	58597030	6	-1.2204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	58602052	64224205	3381	-0.0015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	64224792	64236692	9	-0.9276
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	64239563	105421679	27419	0.0085
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	105425255	105447793	21	-1.1041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	13	105448867	115108397	6894	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	14	19002124	19382209	24	0.1333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	14	19382344	20417861	159	-0.4636
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	14	20418957	22536071	1478	0.0088
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	14	22537377	22970327	390	-0.2613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	14	22970447	107285437	53520	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	20016328	20269773	57	0.0479
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	20284066	22586960	363	0.7128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	22587474	34694636	7392	0.0244
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	34695322	34881581	93	0.2733
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	34881666	76891511	26441	0.007
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	76891627	76895344	13	-2.4187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	76895767	76895775	7	-1.0465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	15	76902179	102469040	17682	0.0079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	60777	53458017	25293	0.0201
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	53469387	53469463	2	-1.3387
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	53469807	55796594	2028	0.0101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	55798222	55798779	3	2.2996
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	55804348	55822444	15	0.63
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	16	55829557	90287535	25083	0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	526	2311629	1157	0.0396
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	2312354	2312374	4	0.9915
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	2316528	6558662	2611	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	6559218	6563296	2	-1.6175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	6564139	16738160	6746	0.0169
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	16740270	16741528	3	1.3557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	16741784	18319862	918	0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	18355392	18465221	29	0.6319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	18469197	34436708	6922	0.0172
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	34437128	34485091	37	0.5861
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	34528125	35776168	691	0.0223
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	35779119	35779639	2	-1.8802
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	35785479	39423014	1852	0.0075
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	39423026	39430450	22	1.4563
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	39430531	44212428	2548	0.0126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	44213204	44752283	137	0.3333
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	17	44752300	81049726	21613	0.0101
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	18	11543	41974015	25222	0.0086
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	18	41974818	41978625	7	-1.0183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	18	41982671	55930550	9531	-0.0053
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	18	55930862	55935962	23	-0.8872
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	18	55938939	78015057	16028	0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	19	90910	52142352	24955	0.0123
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	19	52142615	52148197	10	-0.7186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	19	52154905	59097854	4381	0.0193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	61305	1560999	1205	0.0273
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	1561580	1593893	41	2.2925
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	1597946	21858551	15772	0.0092
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	21863229	21867300	3	-1.2674
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	21875728	26231998	3006	0.0096
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	26232228	29648981	89	0.2247
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	29648997	33993091	2036	-0.0059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	33995332	33996993	2	-2.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	20	33999901	62956153	20337	0.0065
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	21	10736871	48096957	24405	0.0118
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	16052528	16239362	29	-0.3367
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	16239487	22473918	3271	0.0508
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	22474023	22474613	5	-2.7791
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	22481498	22752462	341	0.0483
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	22752680	22752880	4	1.0539
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	22757321	23262981	269	0.0785
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	23263242	23263257	2	-2.4276
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	23263274	24271679	665	0.0509
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	24271692	24332933	32	0.5112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	24337307	24344422	3	-0.1917
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	24350529	24396814	19	-2.0159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	24401529	25664801	824	0.0104
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	25664832	25918709	290	-0.8934
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	25922342	29652158	3097	0.006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	29653409	29653419	2	-1.3229
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	29653706	37425031	5650	0.0063
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	37425258	37432311	6	-0.6975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	37433457	42892439	2909	0.0157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	42892582	42955431	28	0.5284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	22	42955788	51234455	6103	0.0256
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	168477	39632142	24761	0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	39632673	39633818	4	-2.2009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	39633990	40565257	475	0.0325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	40565449	40565844	2	-4.643
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	40571413	104579821	29754	0.0157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	104580403	104587693	7	-2.6051
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	X	104587822	155182354	29407	0.0129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	Y	2650438	22823871	6950	-0.9724
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	Y	22825211	22844230	11	-1.6962
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H01_896542	Y	22844820	59018259	1674	-0.9579
