Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	51598	16741950	8731	-0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	16743865	16842765	38	-0.4114
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	16842898	16889665	25	0.2693
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	16890117	16966653	28	-0.2776
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	16972817	16987299	9	-0.9587
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	17049632	17090494	15	-0.0186
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	17097557	17171083	62	0.3037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	17172314	72541086	34074	-0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	72541504	72583736	46	-1.1407
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	72584492	104027091	20115	-0.0097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	104041212	104062729	12	0.6028
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	104069745	105820728	921	-0.0175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	105820759	105823898	16	-2.0534
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	105825578	147303148	11055	-0.0097
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	147306690	147557399	137	-0.7057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	147558223	150817885	1509	-0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	150817949	150853200	44	-0.421
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	150853218	173063028	15085	0.0317
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	173063179	173068463	16	-0.6604
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	173068477	192714857	13206	0.2493
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	192718034	192721641	2	-1.7954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	192723639	194981496	1454	0.2547
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	194994473	195152308	152	-0.6792
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	195153332	197374325	1323	0.2436
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	197377986	197379634	8	-0.8899
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	197380463	211071078	9390	0.2377
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	211071635	211077059	7	-0.9751
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	1	211081076	247191011	25183	0.2448
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	2784	34321443	23971	-0.1072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	34321466	34322793	2	-2.152
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	34324093	34544573	142	-0.1203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	34552819	34580184	38	0.3773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	34580200	52607972	13055	-0.1102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	52607984	52643997	42	-0.6996
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	52645628	106246527	29681	-0.1121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	106247145	106248065	3	-1.0488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	106249661	106251789	8	-2.4801
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	106253687	146578555	23952	-0.1067
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	146580874	146583404	24	0.4749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	146594276	186526988	24497	-0.1034
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	186529287	186537078	6	-1.1614
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	2	186537691	242738129	34649	-0.1032
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	35345	199602	156	-0.0783
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	205022	207639	3	-3.0548
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	207800	1756803	1395	-0.055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	1757524	1762581	6	-1.4229
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	1764158	65163493	43837	-0.0162
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	65164275	65174742	31	-0.7848
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	65174907	65181984	13	-0.0246
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	65182371	65185017	5	-0.9598
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	65185194	68828854	2428	-0.0236
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	68828949	68830103	14	-1.0493
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	68831448	75447120	4845	-0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	75447170	75449783	3	-1.2289
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	75452394	75503860	29	0.0932
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	75509797	75722197	74	-2.4012
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	75728074	100420474	11006	-0.022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	100427148	100436451	44	0.4462
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	100447567	131273859	18768	-0.0071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	131273899	131288926	33	-0.537
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	131289614	152992028	13596	-0.0136
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	152992732	153028569	31	-1.0703
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	153031181	164015644	6680	-0.0109
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	164017424	164023184	6	1.8692
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	164028410	164109266	49	0.3009
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	164109297	194360739	19199	-0.0155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	194360889	194365597	17	-1.1585
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	194369129	196884256	1490	-0.0117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	196885980	196932268	22	0.646
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	196932413	199318545	1159	-0.021
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	199318743	199319402	8	0.7438
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	199319835	199322975	8	-0.0984
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	199329613	199334102	11	-1.6408
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	3	199335622	199380515	9	-0.014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	2281	9819392	5803	-0.0286
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	9819488	9843364	32	0.3882
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	9843706	34455357	16995	-0.0154
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	34455370	34506308	45	0.5732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	34506323	48849526	8975	-0.0184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	48856515	49353369	33	0.4156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	52380456	68902978	10461	-0.0133
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	68909443	68939354	4	1.351
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	68942668	69102618	41	0.0474
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	69102634	69166644	40	-0.4553
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	69166682	115393149	27749	-0.0121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	115394772	115401624	23	-1.0325
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	115403678	130282201	8734	-0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	130286996	130287610	2	-3.0412
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	130292013	138311689	4523	-0.0112
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	138311870	138312255	8	-3.3126
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	138312357	138312864	6	-1.3877
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	138314408	172605017	21468	-0.015
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	172605106	172614285	12	-1.0275
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	4	172614299	191261904	12539	-0.0236
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	68532	720509	301	0.0688
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	723745	870850	51	0.4526
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	870992	10891090	8471	0.1064
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	10891368	10905242	9	-0.5569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	10908335	12872313	1395	0.1156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	12872375	12891533	11	-1.369
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	12902201	15772222	1978	0.1416
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	15772350	15773451	8	-0.7187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	15773478	17863895	1356	0.1217
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	17864610	17864626	2	-1.8089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	17865544	180311316	99387	0.1138
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	180311494	180365870	20	0.6351
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	5	180375006	180722926	169	0.0584
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	94661	239443	121	0.158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	239474	327559	82	-0.1365
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	327897	29945167	21547	0.1662
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	29945293	29957246	14	-0.833
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	29958175	32538707	1182	0.1592
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	32538953	32648455	37	-0.374
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	32648589	32732282	33	0.2756
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	32732569	32734596	5	-1.1856
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	32758590	54039110	13750	0.1625
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	54039189	54039814	6	1.8846
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	54043307	65393663	4356	0.1696
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	65404265	65405713	2	-1.7573
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	65407497	66450811	699	0.1672
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	66456203	66463848	25	-0.557
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	66463931	69134708	1914	0.1829
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	69137152	77071668	5009	-0.1089
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	77073620	77073646	3	1.3679
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	77073713	77496767	298	-0.1042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	77496813	77509408	18	0.3342
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	77509476	79019608	980	-0.1204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	79025784	79098352	114	-0.8511
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	6	79098438	170892930	59781	-0.1159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	52911	61487728	40718	0.076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	61488023	61761020	57	0.5022
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	61761182	70057754	4107	0.0574
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	70058374	70064077	3	-1.6163
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	70066179	100163125	17161	0.071
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	100167180	100167201	2	-2.2816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	100170778	100839206	265	0.0801
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	100846452	100846669	2	-2.0989
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	100849631	104945292	2255	0.0819
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	104947660	104953756	3	-1.7324
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	104954012	133429008	17608	0.076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	133429177	133448649	35	0.5787
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	7	133449083	158819765	16305	0.0761
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	21254	583041	326	-0.2424
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	584944	585875	8	0.7026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	585892	585908	2	3.7216
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	591043	7242520	7524	-0.2464
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	7254775	7869464	149	-0.6184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	7875953	51193325	27551	-0.2151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	51194564	51194940	8	-1.6804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	51195976	58534920	4798	-0.0187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	58535062	58540800	12	-0.5795
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	58543561	112363642	32651	-0.0155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	112363822	112364436	7	-1.2054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	112369457	137747078	17756	-0.0142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	137750801	137931598	174	-0.8834
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	8	137931617	146268959	5004	-0.0177
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	9	36587	44569219	31469	-0.1131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	9	44667855	44795733	36	0.5926
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	9	44806024	140211215	48424	-0.1117
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	62759	24417681	19252	-0.1141
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	24417682	24418060	9	-1.83
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	24418914	42070878	9973	-0.1122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	42080059	42087649	3	-1.398
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	42102890	46094186	2353	-0.1014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46111165	46366714	8	-1.3361
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46366738	46475717	73	-0.3331
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46478798	46479827	22	0.3412
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46482317	46487487	6	-0.1257
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46488233	46562313	53	-0.7377
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	46562328	90928653	28901	-0.1164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	90932947	90933639	6	-1.8055
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	10	90933716	135356694	30447	-0.1145
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	188510	4926819	2481	-0.0124
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	4926853	4932848	28	-1.7167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	4932910	5735099	788	-0.0049
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	5739501	5765914	42	0.3904
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	5766037	6072681	243	-0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	6073419	6079079	6	-1.4174
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	6080464	18908269	9193	-0.0157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	18908507	18918939	44	0.4215
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	18927281	50952948	21458	-0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	50983318	51040151	7	-1.1662
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	51040270	55118007	378	0.0293
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	55119916	55209585	60	0.439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	55210152	62269326	4191	-0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	62270875	62271457	4	1.0355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	62271682	67272430	2056	-0.0095
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	67273413	67287674	6	-1.0167
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	67290361	96977840	19167	-0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	96977941	96978425	3	-1.5757
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	96980144	101099594	3229	-0.0148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	101103070	101103174	4	1.4245
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	11	101103422	134449982	23787	-0.0094
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	20703	11111991	7276	0.0855
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	11112094	11132799	11	-1.0451
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	11143141	33185927	15595	0.0841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	33192673	33198641	27	-2.6121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	33199627	113571654	49393	-0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	113572595	113574792	2	-2.1816
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	12	113574916	132288262	12799	-0.0135
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	13	17924949	51992800	23500	0.0853
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	13	51995985	52003786	3	-1.5513
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	13	52015880	71374989	11662	0.078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	13	71375556	71378557	4	-2.8922
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	13	71378606	114126499	29156	0.0805
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	18072124	18261718	19	-0.31
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	18343625	18627041	21	0.6945
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	18632139	21394980	1414	-0.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	21395311	22076067	643	-0.3387
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	22080284	73065527	32246	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	73070876	73099653	10	1.7316
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	73099668	87473129	9527	0.0076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	87473147	87492322	23	0.4059
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	87496390	105848388	11386	0.0072
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	105854089	105892781	12	-1.0348
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	105896961	105939331	26	0.1439
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	105939599	106224087	185	-0.2098
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	106224112	106255229	25	0.3865
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	14	106255421	106356482	68	0.0035
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	18276341	18522250	53	0.057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	18524300	18838175	42	0.3534
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	18838318	18846971	22	0.8149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	18850041	19548935	186	0.3696
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	19555435	19792388	8	1.4976
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	19794591	20302458	114	0.5861
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	20302609	21605880	612	0.0806
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	21606530	21610186	19	-1.0204
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	21610400	21948655	249	0.1054
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	21948712	21999846	26	-0.321
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	15	22005479	100286563	50746	0.119
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	777	34328799	20557	0.0835
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	34328965	34613067	165	0.5155
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	34614572	53785115	6089	0.0773
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	53786365	53788837	5	-1.1701
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	53789241	76930347	15049	0.078
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	76930838	76940641	11	0.995
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	16	76942239	88815036	10647	0.0802
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	526	29296898	16830	-0.0158
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	29297694	29299175	2	-2.442
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	29299177	31449476	1552	-0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	31449687	31559764	49	0.3139
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	31567456	36668173	2539	-0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	36671898	36683976	26	1.1386
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	36684057	36769083	78	0.0102
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	36770554	36771471	8	0.6505
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	36771502	41564110	2460	-0.0131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	41564451	41719947	92	0.3991
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	41750187	74754356	19909	-0.0159
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	74754645	74757985	5	-1.1306
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	74758639	76728036	1020	-0.0076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	76743361	76746508	6	-1.0805
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	17	76749752	78643088	726	-0.0176
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	1543	210071	59	-0.1768
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	210341	210599	2	-1.8579
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	215051	6564570	4615	-0.1121
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	6569216	6570728	2	-1.7349
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	6570778	11615900	3862	-0.1099
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	11627252	11633637	2	-2.177
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	11638759	22619861	5375	-0.0459
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	22619913	22620377	4	-1.1372
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	22620560	51453338	19096	-0.0128
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	51454140	51469586	10	-0.9569
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	18	51474389	76116029	17801	-0.0132
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	41910	9134800	3413	0.07
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	9135672	9139121	5	-1.9523
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	9145760	60031545	23635	0.0127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	60038942	60052350	7	-0.9337
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	60055336	60973882	446	1e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	60974181	60974879	4	-2.1546
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	19	60978105	63789666	1847	-0.0242
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	20	9305	8217201	6235	0.0829
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	20	8217273	8217704	2	-2.4201
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	20	8221096	62426597	36271	0.0749
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	21	9758742	46921385	24412	0.0707
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	14432528	22660218	4617	-0.1137
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	22660269	22661967	2	-2.8954
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	22662625	22667949	4	-0.3605
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	22674422	22726814	20	0.3725
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	22731529	37704661	10890	-0.1201
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	37705253	37729258	14	0.4979
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	37733740	49313898	7864	-0.1195
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	49319974	49319982	5	-1.488
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	22	49320620	49581321	146	-0.0613
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	X	108477	115814755	61343	0.0037
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	X	115814841	115931991	71	0.5361
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	X	115933657	154835548	23218	-7e-04
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	2710438	3045595	151	-2.6956
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	3065268	6170498	690	-2.3571
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	6172554	6356423	83	-3.7948
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	6359046	16780637	4050	-2.8319
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	16783449	17038883	97	-3.3906
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	17042729	18094491	556	-2.9142
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	18097792	19547685	697	-3.419
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	19547873	22063159	977	-2.8863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	22093119	22099738	2	-8.0883
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	22125089	22915376	262	-2.9465
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	22919906	24599413	317	-3.5181
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	24602438	24923103	89	-2.7549
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	24926921	25725360	92	-3.791
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	25776875	26129939	93	-2.5355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	26130472	26687080	195	-3.3962
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	26699115	26731407	13	-4.9766
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	26731471	26833326	43	-3.3278
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H09_896630	Y	26847504	57427647	183	-2.5426
