Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	3218610	101551513	56774	0.0212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	101553467	101644210	71	0.2849
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	101648328	101655292	2	-0.76
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	101655670	103064174	858	0.3188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	103064353	120527361	10084	0.024
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	149881398	192416200	26081	0.5175
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	192418808	192420628	5	1.3897
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	1	192420897	247813706	35249	0.5284
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	2	484222	240559945	130190	0.0116
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	2	240561313	240564673	6	-0.8042
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	2	240571827	242243184	932	0.0122
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	2	242246615	242247994	2	-0.8131
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	2	242248033	242476062	127	-0.0143
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	2212571	30191123	16532	0.0174
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	30192544	30192565	2	-1.1079
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	30192777	44901442	8735	0.0203
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	44901762	44910693	3	-0.8972
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	44913139	67896101	13206	0.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	67905132	70024360	1584	0.3307
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	70080890	117177909	24005	0.016
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	117178616	117178744	2	-1.2164
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	117182204	187930513	37511	0.0139
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	187931652	187933361	2	-1.0657
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	3	187934849	197538677	4780	0.0251
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	1053934	7309313	3423	0.0234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	7311399	7313221	2	-1.0006
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	7314043	14001521	4111	0.0349
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	14002590	14002655	2	-1.0057
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	14008206	61349646	26007	0.0234
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	61351143	61352182	2	-1.1044
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	61352529	106530803	24786	0.0192
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	106531744	106531758	2	-1.2157
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	4	106531938	188763651	44383	0.0185
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	5	914233	114756455	61040	0.0191
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	5	114756637	114756862	5	-1.0212
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	5	114759078	180360469	39441	0.026
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	1014281	46918987	27637	0.3165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	46919106	46920990	4	1.0179
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	46924467	56123969	5692	0.3183
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	56125009	56208454	72	0.5975
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	56212578	57206485	482	0.3312
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	62234533	62581757	109	-0.3863
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	62582852	63111149	237	0.3216
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	63111798	63400553	132	-0.3807
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	63410557	63531865	62	0.3332
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	63533748	63683604	66	-0.3481
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	63687450	63701066	9	0.3187
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	63704903	78020836	8085	-0.3731
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	78021262	78024285	2	-1.8905
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	78024630	169639901	53257	-0.3833
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	169639999	170679385	455	-0.9355
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	6	170679678	170903919	145	-0.3713
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	705284	20102221	9397	0.3193
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	20103456	21554327	1058	0.5629
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	21557854	34824382	8822	0.3165
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	34825436	34847196	8	-0.2547
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	34848504	77727270	19687	0.3149
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	77729420	77731220	3	-0.7457
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	7	77734969	158385118	42326	0.3129
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	8	617667	145232496	81527	0.3148
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	789932	2481455	1070	-0.3841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	2481651	2481683	2	0.7841
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	2483527	9188533	4105	-0.3656
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	9188615	9188865	3	-1.301
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	9188957	14563604	2571	-0.3633
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	14564090	14564101	2	-1.7304
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	14565982	16328688	1391	-0.3628
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	16333416	16750563	362	-0.9473
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	16750627	31021638	9019	-0.3638
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	31023908	31039375	18	0.1225
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	9	31044850	140938752	49463	-0.3704
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	10	415240	74478121	42849	-0.3732
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	10	74479047	74482205	4	-2.0428
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	10	74490023	135225087	37984	-0.3719
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	11	456120	134142530	77244	0.0168
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	12	889902	133161346	73932	0.0188
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	13	19450806	56057503	21789	-0.3804
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	13	56062163	56194178	72	-0.7936
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	13	56197842	104549770	28363	-0.3746
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	13	104568377	105343317	597	-0.9509
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	13	105345251	114987458	5802	-0.3866
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	14	20501368	105988038	49439	0.018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	15	23687685	24240924	407	0.0242
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	15	24241342	24284965	27	-0.9307
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	15	24288092	32937463	2812	0.0292
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	15	32944870	33098056	134	0.366
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	15	33098560	101884307	41138	0.0211
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	16	653459	655262	6	-0.2224
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	16	668967	4877958	1487	-0.001
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	16	4878402	4878889	3	-0.8156
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	16	4883597	31850299	12388	0.025
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	16	46507665	89379936	26905	-0.3483
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	17	987221	1505164	151	0.0151
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	17	1507291	1509906	2	-1.1753
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	17	1510937	80917016	36830	0.0134
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	18	329586	8610640	4517	0.0389
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	18	8613487	9343487	503	-0.3914
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	18	9350744	77109240	37627	0.0248
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	19	284018	7445633	2052	-0.0111
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	19	7451300	7454022	3	-1.0014
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	19	7460859	58878226	21891	0.0018
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	20	455764	62219837	37280	0.0232
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	21	15347621	47678774	20581	0.0184
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	22	17423930	49331012	16922	0.0255
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	3157107	12431576	3136	0.0019
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	12432747	12434756	4	-1.7127
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	12434769	115914697	42920	0.0041
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	115916442	115929906	4	-2.4106
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	115930113	129548429	6686	0.0076
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	129551971	129552004	2	-2.8757
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	129552909	152815991	10647	0.0107
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	152823330	152868418	23	-1.1664
LIGER_p_TCGA_166_180_SNP_N_GenomeWideSNP_6_H11_896572	X	152868836	154905589	319	0.0192
