Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	61735	110227515	66777	-0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	110232974	110240178	17	-1.1063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	110242953	152555527	10015	-0.0125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	152555706	152586238	31	1.1625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	152586278	152759678	175	-0.0422
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	152761923	152768700	37	0.7809
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	152773905	196714873	29535	-0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	196727850	196801805	89	-0.3924
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	196801850	215855883	12719	-0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	215855994	215862105	15	-0.7542
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	215866009	229811169	9151	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	229816856	229820196	3	-2.7891
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	229820456	229821753	7	-0.4501
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	229821898	249181459	14028	-0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	1	249184667	249224388	22	-0.5121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	12784	73411	33	-0.4423
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	75357	4216420	2961	-0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	4216452	4222432	27	-0.7375
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	4222484	5736039	1170	0.0264
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	5736321	5736507	2	-2.4647
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	5737113	34683290	19908	0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	34685280	34737163	49	0.5882
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	34737556	146862085	66689	-1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	146864404	146866934	24	-1.799
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	146877806	208350319	36974	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	208350626	208359336	20	-0.8513
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	2	208359476	243089456	22131	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	60345	95973	28	-0.4518
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	96098	6646543	5816	0.0165
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	6651128	6653148	20	-0.724
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	6653222	10259114	2837	0.01
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	10259143	10301300	30	-0.3532
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	10302960	18861144	5795	0.0104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	18862823	18866806	5	0.9806
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	18870171	26426191	5402	0.004
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	26434124	26439343	4	-1.5657
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	26445973	26612110	127	-0.0876
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	26612164	26612166	3	1.6935
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	26613201	37974820	7611	-0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	37976115	37986928	22	-0.7696
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	37987106	68746164	20147	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	68746259	68747413	14	1.1809
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	68748758	133024867	36903	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	133024882	133024897	2	2.1863
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	133025012	136019099	1905	-0.0216
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	136022951	136025426	2	-2.3575
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	136038541	143285118	4336	-0.0213
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	143285765	143285974	5	1.0466
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	143286801	161515597	11217	-0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	161515627	161515649	2	1.9404
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	161515944	162508178	676	-7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	162508192	162626572	73	0.4014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	162626603	176263699	8423	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	176264573	176264600	2	-1.959
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	176268413	184334750	4665	-0.0199
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	184337818	184356355	14	-0.5766
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	184356658	187595294	2253	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	187595378	187595713	2	2.1217
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	187595740	192878593	3830	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	192878821	192879006	2	1.6145
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	192880473	195383142	1501	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	195390680	195479748	49	-0.3853
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	195481811	197834570	1137	-0.0224
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	197834720	197834802	2	1.5494
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	3	197835005	197896118	29	0.0701
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	12281	9464537	5251	-0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	9464972	9479206	6	1.709
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	9479345	10210390	546	0.043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	10214160	10234608	32	2.1685
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	10235007	10244955	12	0.5514
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	10245898	10392354	164	0.0538
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	10393154	10400668	15	-0.5329
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	10402718	34779004	16796	0.0071
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	34779025	34829928	44	-0.4012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	34829949	43145397	5524	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	43145431	43148161	7	-0.9844
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	43148953	64693940	11048	-0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	64697469	64717026	31	0.517
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	64718043	70389716	3438	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	70389861	70390779	2	-2.9434
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	70391888	86975223	10335	-0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	86976094	86979147	15	-0.7426
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	86979382	99070468	7164	-0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	99071062	99320147	133	0.6083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	99322238	104745571	3276	-0.0097
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	104751630	104751637	5	1.5595
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	104751644	108068413	1881	-0.0077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	108071519	108071628	3	1.6769
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	108071888	115175323	4426	-0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	115175344	115184266	25	0.69
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	115184310	161873906	28029	3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	161873912	161884600	24	-0.6131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	161884908	172987928	7082	-0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	172989148	172989533	12	-1.5305
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	172995979	173428342	236	0.0388
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	173428471	173428643	3	1.4283
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	173441132	183730650	7017	0.0072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	183731737	183731744	2	1.6036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	183735262	185748806	1312	-0.0141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	185748970	185778750	21	-0.8322
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	185778979	189871007	2896	-0.0084
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	189872329	189872793	2	-3.6544
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	4	189872850	191027923	631	-0.0104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	15532	75450020	46379	3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	75450067	75450144	3	2.0305
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	75450176	103851221	16399	-2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	103860373	103860604	4	-1.479
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	103861049	177198449	48293	-0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	177227551	177232605	3	2.3306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	5	177254965	180790320	2004	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	149661	31277686	22435	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	31280823	31295406	8	-1.9675
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	31295953	32622194	574	0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	32624304	32626618	6	-1.375
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	32650612	53931067	13740	4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	53931084	53931855	8	0.9876
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	53935348	58422642	2419	-0.0196
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	58426052	58427069	5	-1.3172
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	58432574	65336942	1929	-0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	65347544	65348992	2	-2.1993
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	65350776	67004925	1100	-0.0119
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	67004973	67037554	35	-0.5133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	67038021	67043235	10	-2.3228
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	67043358	67049406	14	-0.8222
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	67049599	69653759	1833	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	69657055	69661241	2	1.7533
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	69662367	71727564	1279	-0.0105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	71728866	71729002	2	1.5691
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	71729019	72862925	797	0.006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	72866524	72866872	2	-1.6625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	72868563	74592225	1090	-5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	74592457	74597341	8	-2.6127
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	74601410	77027781	1503	-0.0142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	77032953	77033189	2	2.0945
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	77033209	77429730	261	0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	77436159	77452757	23	0.5356
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	77461073	103737976	16573	-0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	103738039	103762061	45	0.7659
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	103765470	134266268	19079	-5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	134269071	134269632	2	-1.819
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	6	134272072	171051005	25139	-0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	43355	54386505	38562	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	54386509	54386517	5	1.52
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	54393488	66629240	3888	-0.0214
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	66629329	66699784	25	-1.2072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	66700484	70420438	2382	-0.0108
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	70423250	70426141	2	-2.8027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	70428243	97395460	15852	-0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	97395462	97402475	15	-0.8835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	97404240	109430050	6628	-0.0112
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	109433747	109453910	39	-0.6952
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	109453982	127930962	11332	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	127930979	127930994	2	1.6395
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	127931080	142047315	8892	-0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	142047396	142047648	2	1.7896
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	142099013	159041893	10772	-0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	7	159043063	159127004	81	-0.3443
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	31254	4168502	4185	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	4168616	4168663	2	-1.6797
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	4168964	7186646	3641	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	7193821	7838573	182	-0.4772
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	7838727	11949551	3284	-0.0129
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	11987726	12001123	6	-2.112
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	12034307	12291824	64	0.1358
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	12304112	12443055	49	-0.3479
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	12473543	18265154	5332	0.014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	18266157	18271185	4	-2.2406
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	18271387	24974476	5090	-0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	24974522	24984141	21	0.6388
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	24984156	32678866	5446	-8e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	32683098	32688413	8	0.7943
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	32692106	39230659	3578	-0.0106
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	39235603	39386965	59	-2.364
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	39388299	40184550	598	-0.019
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	40184742	40184872	3	1.4609
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	40184923	64848636	13049	-0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	64848897	64849510	7	1.5249
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	64849723	78755329	8441	-0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	78756303	78756512	2	1.5025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	78756643	101114807	13037	-0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	101115145	101119137	3	-1.5605
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	101122397	112295081	6902	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	112295202	112295260	3	-1.9898
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	112300281	120152010	4968	0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	120154784	120162854	5	-1.0515
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	120163725	143224644	16881	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	143225883	143234817	3	1.9365
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	143235878	146275743	1054	-0.0266
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	8	146275791	146298155	14	-0.6462
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	46587	23361805	20451	0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	23363115	23373484	8	-1.9354
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	23378488	29088729	4337	0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	29089610	29097680	6	1.1485
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	29100799	38805380	6379	-0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	38808958	38994130	12	-0.6892
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	38996103	43072777	171	0.0679
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	43084322	43800186	50	0.6921
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	44114872	46038857	143	0.0281
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	46038859	46400683	33	0.4217
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	46434237	115808817	32280	-0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	115812384	115820566	8	-1.0395
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	115854351	118852684	2258	0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	118855224	118859383	6	1.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	118860607	136174305	11451	1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	136174696	136181635	2	-1.8529
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	9	136181756	141091394	2305	0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	72759	6654129	5676	0.0139
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	6657775	6664507	25	-0.9011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	6664668	18185123	9193	0.0072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	18196769	18199813	2	1.6904
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	18223647	24377674	4340	-0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	24377675	24378054	10	-2.3259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	10	24378908	135506704	71817	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	198510	4967650	2474	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	4968117	4977011	44	0.562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	4977082	5783052	777	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	5783112	5809139	37	-0.4903
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	5809338	18940870	9420	-0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	18949072	18961178	40	-0.3628
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	18961281	21196235	2066	0.0115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	21196350	21196391	2	1.6158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	21196509	31393294	7039	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	31394268	31397080	2	-2.333
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	31398207	42813151	8108	0.0085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	42816486	42818039	2	-2.6556
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	42820603	48929921	3514	-0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	48930132	48930328	2	2.5229
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	48964733	51183694	742	-0.0283
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	51183906	51195051	3	-1.7227
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	51205141	91830489	21814	-0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	91830658	91831043	2	2.1835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	91832704	133817472	30187	-0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	133817656	133818097	2	2.1087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	133819442	134893106	805	0.0324
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	11	134893915	134944770	34	-0.4081
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	150442	3427655	2148	-4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	3427738	3428428	2	-1.9804
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	3428759	8357507	3399	-0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	8362050	8371320	9	1.0479
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	8372757	9633870	644	-0.0306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	9637909	9715565	23	-1.4958
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	9728292	73242116	38995	8e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	73245404	73245405	2	2.3733
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	73253192	99795648	17015	5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	99795737	99803093	29	-0.7763
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	99803118	112121870	7881	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	112123284	112123564	2	-1.6018
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	112125404	119983754	5783	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	119983825	119994041	18	-0.8963
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	119994047	120333654	214	-0.028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	120333783	120360823	12	-0.7045
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	120363614	127125380	3867	-0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	127125744	127130492	2	2.2206
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	127131040	130444853	2976	0.0218
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	130447464	130450562	3	1.5543
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	12	130452931	133778189	1991	-7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	19026949	23632678	2890	-0.0237
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	23632860	23633515	11	-0.7841
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	23638195	38070370	10648	-0.0077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	38071135	38084757	17	-2.0148
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	38088330	51545054	9115	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	51546911	51549198	2	2.4973
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	51549557	57763290	3422	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	57763351	57778380	27	-0.6598
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	57789714	72476988	8992	0.0183
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	72477555	72480605	5	1.2825
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	13	72486483	115108397	29143	0.0089
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	19002124	106751284	55244	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	106753859	106753867	3	2.5935
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	106754003	106796697	18	-0.1121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	106801355	106821736	8	-1.5512
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	106825916	107145564	207	0.0627
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	14	107152270	107285437	96	-0.2575
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	20016328	24493644	1358	-0.1052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	24501411	24512035	7	0.9561
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	24514620	24674751	64	0.0398
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	24674887	24714790	33	-0.7207
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	24714839	30780663	3743	-0.0205
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	30792569	30925605	10	1.0927
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	30930500	76891241	29125	-5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	76891511	76895775	21	-1.8834
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	76902179	92765755	10235	-0.0061
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	92765874	92766294	3	1.5757
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	92766758	102060908	7210	0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	102061375	102061779	2	-2.0187
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	15	102061971	102469040	226	0.0317
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	60777	3215104	1110	-0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	3215160	3248359	12	0.8005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	3250228	7012472	3220	0.0014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	7013200	7013568	2	2.0717
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	7015770	33447569	15907	-0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	33452737	33625308	63	0.4114
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	33627826	78371608	21431	0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	78372440	78384738	16	-2.1647
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	16	78384765	90287535	10637	0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	526	4538500	2437	-0.0383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	4539171	4544331	6	-1.1309
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	4544466	7257185	1650	-0.011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	7257455	7265806	4	-1.3437
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	7266476	16413609	6302	-0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	16414212	16414856	5	-1.0678
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	16416420	18319862	1032	-0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	18355392	18465221	29	0.6076
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	18469197	18965529	176	-0.0331
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	19003421	19130231	11	-0.7102
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	19149286	44162597	11837	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	44163098	44752283	172	-0.4812
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	44752300	66131701	12575	-0.0062
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	66131977	66137185	4	-1.2652
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	66142930	78628863	8061	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	78629793	78634179	2	2.7864
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	17	78634300	81049726	962	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	18	11543	63762300	40400	0.004
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	18	63767140	63767922	3	-2.5719
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	18	63775595	78015057	10375	0.0148
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	19	90910	17084514	7373	-0.0221
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	19	17085336	17086773	3	-2.6467
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	19	17087954	56278050	20098	-0.0187
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	19	56282070	56283067	5	1.4618
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	19	56286293	59097854	1850	-0.0185
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	61305	1560288	1199	-0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	1560543	1581768	41	0.51
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	1582092	15301374	10404	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	15301902	15302049	2	-2.2987
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	15302374	29651369	8466	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	29651749	30195801	178	0.5383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	30203029	52681610	14776	3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	52681830	52681928	5	-1.8723
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	20	52682258	62956153	7410	0.0171
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	10736871	11175912	112	-0.3732
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	14345669	14597009	52	0.0584
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	14597032	14603577	3	1.5868
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	14612609	44968053	22472	0.008
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	44970873	44972812	2	-2.7785
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	44973667	48066411	1737	0.0114
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	21	48066489	48096957	25	-0.4025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	16052528	24330218	4614	-0.0325
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	24330269	24331967	2	-3.6079
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	24332625	24337949	4	-0.3428
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	24344422	24396814	20	0.7819
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	24401529	25661698	819	-0.03
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	25663985	25918709	287	-1.0165
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	22	25922342	51234455	17790	-0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	X	168477	155182354	84583	-0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	2650438	6101425	871	-2.4011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	6107901	6313572	91	-3.919
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	6315579	15590276	2614	-2.9623
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	15590342	15594523	3	-7.598
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	15594889	19034392	1826	-2.9329
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	19038302	19297985	113	-3.5216
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	19300250	19582738	146	-2.8873
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	19583691	21024613	668	-3.5733
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	21025062	23981777	1119	-2.9833
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	23982659	26630929	569	-3.3792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	26631228	27436702	86	-4.0986
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	27444915	27718290	90	-2.7249
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	27720551	28423938	251	-3.6308
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A08_895856	Y	28438116	59018259	183	-2.6125
