Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	51598	16835856	8754	0.025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	16835900	16843043	17	-0.4053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	16878321	17062591	62	0.1724
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	17063449	17134834	62	0.456
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	17148828	25455928	5272	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	25465715	25519573	28	-1.524
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	25534088	72535958	28772	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	72541006	72583736	48	-1.4379
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	72584492	105820728	21033	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	105820759	105823898	16	-2.1378
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	105825578	108711540	2015	0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	108712268	108787720	12	-0.5998
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	108815431	110008844	619	0.0247
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	110020531	110047653	41	0.5085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	110047796	147173241	8352	-0.005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	147173894	147845346	184	-0.4975
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	147884075	150822151	1487	-0.0103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	150822330	150853164	33	-1.3627
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	150853200	151026302	173	0.0262
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	151028547	151035324	37	0.6959
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	151040529	247191011	65585	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	2784	46578421	33148	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	46579005	46579020	2	-2.8934
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	46582913	52608385	4067	0.0099
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	52612257	52635046	33	-0.435
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	52641453	87155618	22019	0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87160459	87162774	2	1.4981
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87163345	87366798	103	-0.0338
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87367890	87376453	5	-0.9926
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87379991	114078485	11399	0.0064
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	114078884	114097291	3	-1.8264
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	114100022	129354548	9610	-0.003
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	129354948	129355431	6	-0.8369
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	129355452	133048174	1842	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	133048279	133048357	2	-1.837
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	133051531	184502645	31955	0.0067
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	184502759	184510686	16	-0.6198
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	184516834	203004238	10503	-1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	203004252	203010980	12	-0.5341
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	203010998	208063200	3153	0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	208063423	208067581	16	-0.7003
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	208067721	242738129	22128	0.0082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	35345	6621543	5847	0.013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	6626128	6628332	23	-2.6054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	6630078	68828949	41995	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	68828974	68830103	13	1.0778
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	68831448	96938796	14093	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	96949570	96950800	2	-3.3369
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	96951370	96982645	19	0.0259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	96983128	96989317	3	-1.1904
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	96991354	112726200	9226	-0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	112729095	112729272	2	-1.966
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	112732005	131268976	11392	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	131269064	131288926	44	0.6269
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	131289614	170212874	23793	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	170216096	170221322	2	-2.5767
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	170222521	194360596	15747	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	194360656	194365597	19	-1.2161
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	194369129	199380515	2708	0.0208
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	2281	61420	63	-0.5075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	61566	9819488	5738	0.0198
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	9823258	9843364	31	-0.7978
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	9843706	28925172	13694	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	28927337	28927347	2	-1.4498
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	28927363	63829299	19617	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	63829688	63834508	2	-2.119
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	63837162	64376535	307	-0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64380064	64386888	7	0.6658
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64387751	64390176	15	0.0618
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64390200	64390853	7	0.9926
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64399026	68937665	2855	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	68939354	68967186	6	0.9768
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	68970733	68970737	3	-1.7387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	68977394	69054598	12	0.0451
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69057536	69187710	66	0.5672
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69188929	69512426	13	-0.4734
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69571393	70151531	309	0.0146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	70152566	70266611	63	-0.5322
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	70266713	115394772	27352	2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	115394793	115401624	22	0.5578
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	115403678	125678855	6107	1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	125679801	125682385	3	-1.5546
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	125682475	138304557	7145	2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	138308997	138312376	14	-0.6174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	138312388	162099591	14765	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	162099647	162104050	17	-0.7132
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	162104358	173224008	7078	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	173224171	173226108	19	0.5291
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	173232554	189673909	11159	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	189674080	189674168	2	-1.7112
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	189674210	191171930	957	0.0272
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	191188957	191261904	9	-0.8125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	68532	101934	18	-0.3812
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	102560	12525160	10026	0.0336
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12526129	12531802	5	-0.9176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12536994	12853889	173	-0.0183
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12868780	12873076	9	-1.413
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12877411	34295080	13524	0.0094
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34295171	34300312	5	-0.9077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34302311	34357415	33	0.0173
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34357447	34363856	3	-1.3469
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34364179	46307687	7009	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	46308278	46309259	5	-2.6285
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	46313969	57357403	5083	-0.0067
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	57361784	57368154	24	-0.5278
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	57368273	80566573	13764	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	80571506	80576312	9	-1.1
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	80581056	109417803	16639	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	109417844	109417905	2	-1.5962
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	109417930	112116350	1842	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	112116563	112116575	2	-2.1149
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	112116610	156353281	28724	0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	156354509	156358817	5	-1.1368
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	156359871	180722926	16204	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	94661	199283	101	0.037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	202353	248121	26	-0.5825
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	259962	29945051	21617	0.0081
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	29945166	29982621	22	1.4098
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	29982688	32695435	1234	0.0472
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	32700999	32710085	7	-1.3445
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	32710247	74648529	24287	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	74648586	74660283	12	0.7615
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	74660333	77071668	1466	-0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77073620	77073797	8	-0.7516
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77078698	77493251	291	-0.0453
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77496587	77509392	19	-2.9363
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77509408	79019608	980	-0.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	79025784	79102621	119	-0.582
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	79103380	115302149	22778	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	115309225	115309295	2	-1.4897
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	115309299	157699483	27538	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	157701252	157716064	3	-1.6723
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	157716982	170892930	9432	0.0353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	52911	6800402	3438	0.0333
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	6803531	6805249	3	-1.3401
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	6820635	38264360	23998	0.0075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	38264847	38364572	123	0.2344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	38367482	54347867	11008	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	54353999	54354011	6	-1.9436
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	54360982	57538469	1907	0.0168
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	57540053	57540580	3	-1.5242
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	57540651	109221021	26890	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109221034	109228480	26	-0.5504
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109228865	109241146	10	-1.7727
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109241218	125831379	10023	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	125831396	125834113	21	0.4489
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	125834114	125840002	5	-0.5562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	125841634	126063058	143	0.0014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126064268	126083121	16	0.4459
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126083155	134048366	5052	0.0167
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	134050629	134050668	2	-1.5714
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	134051233	141409593	4722	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	141416112	141445459	45	0.3847
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	141445586	142154515	447	0.0856
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	142156294	142165614	27	0.9052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	142165684	143535212	839	-0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	143540168	143658509	34	-0.5022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	143664784	154020828	6454	0.0182
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	154024104	154028012	3	-1.833
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	154030546	158747713	3180	0.0353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	158748462	158819765	67	-0.2379
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	21254	5063056	5395	0.0579
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	5063059	5063260	6	-0.9883
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	5063360	25030393	16446	0.0166
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	25030439	25040140	23	0.7522
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	25040167	73756726	27974	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	73761080	73799263	63	0.5207
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	73803161	112364257	23104	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	112364378	112364421	2	-2.3155
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	112364436	115701219	1824	0.0122
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	115703663	115710907	35	-0.5907
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	115719873	120177557	3080	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	120180268	120180592	3	-1.2168
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	120182249	125385574	3471	-0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	125386088	125392192	2	-1.5703
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	125393988	146268959	14516	0.0218
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	36587	8893857	8558	0.0111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	8893925	8893936	2	-1.5665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	8895111	22482889	11305	-0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	22491913	22492699	2	-2.6677
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	22499340	23351805	581	-0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	23353115	23363484	8	0.9698
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	23368488	40781515	10841	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	40799377	40801602	2	1.6148
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	40801997	41616881	21	0.0592
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	41616896	43680535	80	-0.4
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	43687249	44569219	57	0.1131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	44667855	44795733	36	-1.3459
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	44806024	66786380	125	-0.0374
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	66898608	67050507	7	-0.9443
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	67216185	69220052	215	-0.1092
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69231762	69231768	7	0.7017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69231974	69232330	3	-0.141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69247488	69248021	5	-0.8224
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69256312	69267660	8	-0.2077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69267777	69267827	3	-0.8104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	69267842	140211215	48036	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	62759	17934982	14879	0.0151
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	17967560	17989863	3	-1.7306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	18011822	24417680	4360	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	24417681	24418060	10	-2.5302
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	24418914	26523189	1466	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	26523271	26524829	5	-0.7312
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	26525516	27619802	731	-0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	27619976	27637444	4	0.8983
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	27647191	42005267	7751	0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	42005655	42146434	23	-0.389
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	42146718	66977942	15506	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	66977957	66984436	25	-0.5147
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	66984452	107046269	25732	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	107047028	107047608	2	-1.5215
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	107049160	115194718	5851	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	115198747	115206855	8	-1.0442
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	115209304	135078980	14578	0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135078996	135079131	2	-0.5095
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135079709	135079858	2	-2.0344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135082644	135356694	151	-0.0428
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	188510	4926943	2485	0.005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4928581	4932281	21	-1.789
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4932833	4933483	14	-0.6725
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4933587	5735099	775	-0.027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	5739501	5765624	40	-0.4897
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	5765715	18897446	9424	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	18905648	18927751	63	-0.2625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	18927956	31345718	9084	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	31349689	31353656	4	-1.6245
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	31354783	42769727	8109	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	42773062	42774615	2	-2.2778
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	42777179	48154661	3215	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48156473	48164084	7	0.5823
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48171291	48554998	185	-0.1201
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48558010	48559252	2	-1.722
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48562894	55130624	1225	-0.0344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	55130764	55209585	57	-1.8616
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	55210152	61797095	3966	-0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	61797369	61799750	2	-2.8768
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	61804543	134449982	48462	0.0059
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	20703	2102418	1263	0.0099
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	2104190	2123308	31	0.3258
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	2124532	3251869	820	0.0208
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	3255015	3257415	9	0.5842
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	3257542	9351801	3996	0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	9352495	9359076	2	-1.8194
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	9363632	11112094	1150	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	11113635	11132799	10	-1.3387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	11143141	33185174	15586	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33185765	33199654	36	-0.5107
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33199726	33270870	40	-0.1324
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33271192	33290354	11	-0.5406
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33291012	36161135	753	-0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	36166745	36177141	5	-1.3936
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	36184665	67667054	19027	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	67669103	67669528	2	-1.7186
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	67669632	79035703	7137	-0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	79035843	79036308	2	-1.5456
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	79041253	89007481	5931	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	89015800	89016205	7	-1.18
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	89017688	130686668	28664	0.0144
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	130698537	130699288	13	0.7222
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	130708284	132288262	572	0.0859
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	13	17924949	113531073	64093	0.0075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	13	113533922	113858821	73	0.246
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	13	113861952	114126499	119	-0.074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	18072124	19270249	84	-0.0605
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	19270957	19492423	105	0.5482
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	19493212	37427957	11612	0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	37432181	37434603	4	-1.2053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	37436981	40678108	2032	-0.0079
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	40680246	40726999	14	-0.5973
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	40727099	74178043	21112	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	74178175	74181099	6	-1.2306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	74181267	105153634	20052	0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105169391	105270421	18	0.6835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105289630	105531947	101	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105550720	105553341	4	-1.2058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105558085	105618359	26	0.2129
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105618552	105638145	10	1.4188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	105640508	106356482	416	-0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	18276341	30215371	6248	0.0205
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	30216990	30217159	5	-0.8637
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	30223824	30248179	10	0.2284
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	30248706	30644704	63	-0.3815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	30644774	53944210	14881	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	53947068	54131923	114	-0.9334
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	54132086	82331721	17485	-0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	82331742	82334429	5	-2.7921
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	82334554	100286563	13245	0.0126
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	777	771122	314	0.0899
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	771465	771497	2	1.3808
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	780379	21650439	14262	0.0266
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	21650633	21725436	14	-0.5087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	21727915	29252941	4580	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	29254630	29259279	2	-1.6995
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	29259340	31920779	892	0.0184
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	31931913	32650982	122	-0.4312
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	32669331	33149454	50	-0.121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	33208395	33550900	90	-0.4927
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	33551523	34324072	213	-0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34328205	34358625	21	0.5239
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34360735	34374427	6	-0.1524
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34374807	34613067	140	0.5227
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34614572	54008214	6295	0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	54009118	54009406	3	-1.3359
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	54009516	81820922	20263	0.0153
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	81821020	81822245	2	-1.8264
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	81822558	88815036	5233	0.0599
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	526	18901	9	-0.2604
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	23664	36676736	20967	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	36676783	36676831	2	-1.6869
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	36676846	41522239	2527	0.0146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	41522273	41581620	46	-0.3683
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	41581633	41623640	38	-0.9338
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	41625070	41791196	45	-0.4259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	41797224	46787630	2441	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	46788504	46790445	3	1.0659
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	46790544	53567099	4958	0.002
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	53567513	53572397	5	-0.9711
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	53576034	78643088	14245	0.0169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	1543	36117456	22517	0.0067
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	36124928	36125243	2	-1.7551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	36125850	36514418	313	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	36514432	36519387	18	-0.6799
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	36522022	76116029	27956	0.0094
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	41910	14899939	6133	-0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	14906192	14910299	3	-1.5811
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	14912287	63789666	23218	-2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	9305	1508562	1200	0.01
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	1508787	1538257	42	0.4551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	1538455	3985528	1695	-7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	3985627	3986666	4	-1.2532
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	3987184	26145899	17073	0.0077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	26145931	28151971	75	-0.3141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	28153352	62426597	22406	0.0147
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	9758742	43792481	22636	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	43795301	43797240	2	-2.8026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	43798095	46921385	1766	0.0233
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	14432528	14883193	77	0.0604
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	14883847	14884292	2	1.4809
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	14884357	27310867	8395	0.0485
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	27311514	27371332	24	-0.387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	27371877	32503406	3418	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	32504947	32504962	2	-2.014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	32504973	34999716	2028	0.0125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	35000651	35046260	44	0.2559
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	35046347	37620866	1481	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	37625201	37626850	3	1.1695
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	37629060	41229384	1958	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	41234550	41255156	16	0.669
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	41255558	49581321	6116	0.0319
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	108477	2727067	117	-0.0412
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	2727538	2728135	2	-4.7586
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	2729111	126253511	67374	0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	126253606	126254454	2	-3.5169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	126254791	154835548	16967	0.0322
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	Y	2710438	57427647	8588	-0.931
