Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	61735	16963269	8754	0.025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	16963313	16970456	17	-0.4053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	17005734	17190004	62	0.1724
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	17190862	17262247	62	0.456
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	17276241	25583341	5270	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	25593128	25646986	28	-1.524
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	25661501	72763370	28852	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	72768418	72811148	48	-1.4379
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	72811904	106019205	21024	-8e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	106019236	106022375	16	-2.1378
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	106024055	108910017	2015	0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	108910745	108986197	12	-0.5998
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	109013908	110207321	619	0.0247
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	110219008	110246130	41	0.5085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	110246273	148906617	8348	-0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	148907270	149578722	184	-0.4975
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	149617451	152555527	1488	-0.0102
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	152555706	152586540	33	-1.3627
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	152586576	152759678	173	0.0262
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	152761923	152768700	37	0.6959
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	1	152773905	249224388	65582	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	12784	46724917	33144	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	46725501	46725516	2	-2.8934
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	46729409	52754881	4068	0.0099
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	52758753	52781542	33	-0.435
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	52787949	87302107	22014	0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87306948	87309263	2	1.4981
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87309834	87513287	103	-0.0338
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87514379	87522942	5	-0.9926
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	87526480	114362015	11397	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	114362414	114380821	3	-1.8264
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	114383552	129638078	9608	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	129638478	129638961	6	-0.8369
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	129638982	133331704	1840	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	133331809	133331887	2	-1.837
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	133335061	184794400	31954	0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	184794514	184802441	16	-0.6198
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	184808589	203295993	10506	-1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	203296007	203302735	12	-0.5341
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	203302753	208354955	3153	0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	208355178	208359336	16	-0.7003
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	2	208359476	243089456	22128	0.0082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	60345	6646543	5847	0.0128
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	6651128	6653332	23	-2.6054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	6655078	68746259	41995	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	68746284	68747413	13	1.0778
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	68748758	95456106	14088	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	95466880	95468110	2	-3.3369
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	95468680	95499955	19	0.0259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	95500438	95506627	3	-1.1904
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	95508664	111243510	9225	-0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	111246405	111246582	2	-1.966
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	111249315	129786286	11392	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	129786374	129806236	44	0.6269
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	129806924	168730180	23793	0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	168733402	168738628	2	-2.5767
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	168739827	192877902	15747	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	192877962	192882903	19	-1.2161
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	3	192886435	197896118	2708	0.0208
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	12281	71420	63	-0.5075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	71566	10210390	5738	0.0198
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	10214160	10234266	31	-0.7978
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	10234608	29316074	13694	0.0059
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	29318239	29318249	2	-1.4498
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	29318265	64146704	19614	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64147093	64151913	2	-2.119
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64154567	64693940	307	-0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64697469	64704293	7	0.6658
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64705156	64707581	15	0.0618
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64707605	64708258	7	0.9926
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	64716431	69284591	2863	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69288138	69288142	3	-1.7387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69294799	69372003	16	-0.1211
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69374941	69505115	66	0.5672
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	69506334	70116942	318	0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	70117977	70232022	63	-0.5322
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	70232124	115175323	27356	2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	115175344	115182175	22	0.5578
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	115184229	125459405	6110	0
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	125460351	125462935	3	-1.5546
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	125463025	138085107	7143	2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	138089547	138092926	14	-0.6174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	138092938	161880141	14767	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	161880197	161884600	17	-0.7132
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	161884908	172987433	7079	-4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	172987596	172989533	19	0.5291
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	172995979	189436915	11159	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	189437086	189437174	2	-1.7112
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	189437216	190934936	956	0.0275
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	4	190951963	191027923	9	-0.8125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	15532	48934	18	-0.3812
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	49560	12472160	10028	0.0336
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12473129	12478802	5	-0.9176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12483994	12800889	173	-0.0183
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12815780	12820076	9	-1.413
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	12824411	34259323	13523	0.0094
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34259414	34264555	5	-0.9077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34266554	34321658	33	0.0173
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34321690	34328099	3	-1.3469
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	34328422	46271930	7007	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	46272521	46273502	5	-2.6285
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	46278212	57321646	5082	-0.0065
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	57326027	57332397	24	-0.5278
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	57332516	80530817	13766	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	80535750	80540556	9	-1.1
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	80545300	109389904	16640	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	109389945	109390006	2	-1.5962
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	109390031	112088451	1841	-0.0085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	112088664	112088676	2	-2.1149
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	112088711	156420703	28723	0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	156421931	156426239	5	-1.1368
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	5	156427293	180790320	16206	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	149661	254283	101	0.037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	257353	303121	26	-0.5825
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	314962	12718377	9947	0.015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	12718501	12719126	2	-1.3704
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	12719392	29837072	11667	0.0027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	29837187	29874642	22	1.4098
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	29874709	32587457	1234	0.0472
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	32593021	32602107	7	-1.3445
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	32602269	74591801	24288	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	74591858	74603555	12	0.7615
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	74603605	77014948	1466	-0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77016900	77017077	8	-0.7516
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77021978	77436532	291	-0.0453
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77439868	77452673	19	-2.9363
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	77452689	78962889	980	-0.021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	78969065	79045902	119	-0.582
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	79046661	115195456	22777	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	115202532	115202602	2	-1.4897
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	115202606	157779495	27545	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	157781264	157796076	3	-1.6723
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	6	157796994	171051005	9432	0.0353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	43355	6833877	3436	0.0333
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	6837006	6838724	3	-1.3401
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	6854110	38297835	23998	0.0075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	38298322	38398047	123	0.2344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	38400957	54380373	11006	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	54386505	54386517	6	-1.9436
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	54393488	57534527	1906	0.0168
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	57536111	57536638	3	-1.5242
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	57536709	109433785	26896	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109433798	109441244	26	-0.5504
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109441629	109453910	10	-1.7727
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	109453982	126044143	10024	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126044160	126046877	21	0.4489
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126046878	126052766	5	-0.5562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126054398	126275822	144	4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126277032	126295885	16	0.4459
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	126295919	134397826	5052	0.0167
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	134400089	134400128	2	-1.5714
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	134400693	141763124	4722	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	141769643	141798990	45	0.3847
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	141799117	142474939	447	0.0855
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	142476719	142486045	27	0.9052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	142486115	143904279	837	-0.017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	143909235	144027576	34	-0.5022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	144033851	154389895	6455	0.0181
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	154393171	154397079	3	-1.833
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	154399613	159054952	3180	0.0353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	7	159055701	159127004	67	-0.2379
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	31254	5075648	5396	0.0579
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	5075651	5075852	6	-0.9883
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	5075952	24974476	16445	0.0166
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	24974522	24984223	23	0.7522
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	24984250	73594172	27979	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	73598526	73636709	63	0.5207
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	73640607	112295081	23104	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	112295202	112295245	2	-2.3155
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	112295260	115632043	1827	0.0125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	115634487	115641731	35	-0.5907
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	115650697	120108376	3080	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	120111087	120111411	3	-1.2168
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	120113068	125316393	3470	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	125316907	125323011	2	-1.5703
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	8	125324807	146298155	14516	0.0218
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	46587	8903857	8560	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	8903925	8903936	2	-1.5665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	8905111	22492889	11307	-0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	22501913	22502699	2	-2.6677
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	22509340	23361805	580	-0.0103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	23363115	23373484	8	0.9698
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	23378488	40791515	10846	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	40809377	40811602	2	1.6148
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	40811997	41626881	21	0.0593
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	41626896	43740539	80	-0.4
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	43747253	44629223	57	0.1131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	44727859	44855737	36	-1.3459
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	9	44866028	141091394	48416	0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	72759	17894976	14879	0.0151
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	17927554	17949857	3	-1.7306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	17971816	24377674	4359	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	24377675	24378054	10	-2.5302
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	24378908	26483183	1466	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	26483265	26484823	5	-0.7312
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	26485510	27579796	731	-0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	27579970	27597438	4	0.8983
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	27607185	42685261	7751	0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	42685649	42826428	23	-0.389
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	42826712	67307936	15506	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	67307951	67314430	25	-0.5147
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	67314446	107056279	25730	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	107057038	107057618	2	-1.5215
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	107059170	115204728	5851	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	115208757	115216865	8	-1.0442
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	115219314	135228990	14578	0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135229006	135229141	2	-0.5095
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135229719	135229868	2	-2.0344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	10	135232654	135506704	151	-0.0428
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	198510	4970367	2484	0.005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4972005	4975705	21	-1.789
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4976257	4976907	14	-0.6725
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	4977011	5778523	775	-0.027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	5782925	5809048	40	-0.4897
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	5809139	18940870	9424	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	18949072	18971175	63	-0.2625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	18971380	31389142	9082	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	31393113	31397080	4	-1.6245
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	31398207	42813151	8108	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	42816486	42818039	2	-2.2778
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	42820603	48198085	3215	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48199897	48207508	7	0.5823
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48214715	48598422	185	-0.1201
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48601434	48602676	2	-1.722
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	48606318	55374048	1225	-0.0344
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	55374188	55453009	57	-1.8616
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	55453576	62040519	3966	-0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	62040793	62043174	2	-2.8768
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	11	62047967	134944770	48455	0.0059
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	150442	9460534	6119	0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	9461228	9467809	2	-1.8194
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	9472365	11220827	1150	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	11222368	11241532	10	-1.3387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	11251874	33293907	15583	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33294498	33308387	36	-0.5107
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33308459	33379603	40	-0.1324
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33379925	33399087	11	-0.5406
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	33399745	37874868	753	-0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	37880478	37890874	5	-1.3936
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	37898398	69380787	19025	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	69382836	69383261	2	-1.7186
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	69383365	80511572	7136	-0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	80511712	80512177	2	-1.5456
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	80517122	90483350	5932	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	90491669	90492074	7	-1.1799
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	90493557	132120715	28662	0.0145
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	132132584	132133335	13	0.7222
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	12	132142331	133778189	572	0.0859
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	13	19026949	115108397	64281	0.0076
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	19002124	20200409	84	-0.0605
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	20201117	20422583	105	0.5482
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	20423372	38358206	11611	0.0022
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	38362430	38364852	4	-1.2053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	38367230	41608358	2031	-0.0081
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	41610496	41657249	14	-0.5973
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	41657349	75108290	21110	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	75108422	75111346	6	-1.2306
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	75111514	106082589	20053	0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106098346	106199376	18	0.6835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106218585	106460902	101	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106479675	106482296	4	-1.2058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106487040	106547314	26	0.2129
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106547507	106567100	10	1.4188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	14	106569463	107285437	416	-0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	20016328	32428079	6249	0.0207
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	32429698	32429867	5	-0.8637
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	32436532	32460887	10	0.2284
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	32461414	32857412	63	-0.3815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	32857482	56156918	14880	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	56159776	56344631	114	-0.9334
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	56344794	84540717	17483	-0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	84540738	84543425	5	-2.7921
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	15	84543550	102469040	13244	0.0126
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	60777	831121	314	0.0899
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	831464	831496	2	1.3808
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	840378	1186465	92	0.0876
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	1187781	1350198	28	0.3225
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	1353676	21742938	14141	0.0256
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	21743132	21817935	14	-0.5087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	21820414	29345440	4579	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	29347129	29351778	2	-1.6995
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	29351839	32013278	892	0.0184
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	32024412	32743481	122	-0.4312
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	32761830	33241953	50	-0.121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	33300894	33643399	90	-0.4927
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	33644022	34466571	213	-0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34470704	34501124	21	0.5239
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34503234	34516926	6	-0.1524
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34517306	34755566	140	0.5227
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	34757071	55450713	6295	0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	55451617	55451905	3	-1.3359
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	55452015	83263421	20181	0.0157
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	83263519	83264744	2	-1.8264
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	16	83265057	90287535	5236	0.0599
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	526	18901	9	-0.2604
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	23664	39423210	20966	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	39423257	39423305	2	-1.6869
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	39423320	44166421	2527	0.0146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	44166455	44225843	46	-0.3683
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	44225856	44267863	38	-0.9338
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	44269293	44435454	45	-0.4259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	44441482	49432631	2443	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	49433505	49435446	3	1.0659
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	49435545	56212100	4958	0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	56212514	56217398	5	-0.9711
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	17	56221035	81049726	14244	0.0169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	11543	37863458	22516	0.0067
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	37870930	37871245	2	-1.7551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	37871852	38260420	313	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	38260434	38265389	18	-0.6799
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	18	38268024	78015057	27954	0.0094
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	90910	15038939	6133	-0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	15045192	15049299	3	-1.5811
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	19	15051287	59097854	23217	-2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	61305	1560562	1200	0.01
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	1560787	1590257	42	0.4551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	1590455	4037528	1697	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	4037627	4038666	4	-1.2532
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	4039184	26197899	17074	0.0077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	26197931	29538310	75	-0.3141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	20	29539691	62956153	22406	0.0147
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	10736871	44968053	22636	0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	44970873	44972812	2	-2.8026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	21	44973667	48096957	1765	0.0234
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	16052528	16503193	77	0.0604
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	16503847	16504292	2	1.4809
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	16504357	28980867	8395	0.0485
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	28981514	29041332	24	-0.387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	29041877	34173406	3417	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	34174947	34174962	2	-2.014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	34174973	36669770	2028	0.0125
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	36670705	36716314	44	0.2559
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	36716401	39290920	1481	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	39295255	39296904	3	1.1695
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	39299114	42899440	1958	0.0158
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	42904606	42925212	16	0.669
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	22	42925614	51234455	6117	0.032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	168477	2717067	117	-0.0412
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	2717538	2718135	2	-4.7586
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	2719111	126425830	67361	0.0138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	126425925	126426773	2	-3.5169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	X	126427110	155182354	16967	0.0323
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A09_895808	Y	2650438	59018259	8633	-0.931
